Wall clock time and date at job start Mon Mar 30 2020 01:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00104 * 2 1 4 4 H 1.48505 * 109.47149 * 269.99726 * 3 2 1 5 5 H 1.48501 * 109.47501 * 30.00071 * 3 2 1 6 6 H 1.48501 * 109.46930 * 150.00090 * 3 2 1 7 7 C 1.37885 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99816 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99966 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47188 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47131 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47036 * 179.97438 * 12 11 10 14 14 C 1.35970 * 116.99801 * 179.97438 * 13 12 11 15 15 C 1.38685 * 120.03379 * 359.72814 * 14 13 12 16 16 C 1.38158 * 119.97681 * 179.74436 * 15 14 13 17 17 C 1.38468 * 120.05330 * 0.55282 * 16 15 14 18 18 F 1.35100 * 119.96171 * 179.72169 * 17 16 15 19 19 C 1.38423 * 120.06965 * 359.70100 * 17 16 15 20 20 C 1.38265 * 120.01889 * 0.02562 * 19 17 16 21 21 Cl 1.73598 * 120.02625 * 179.97438 * 20 19 17 22 22 H 0.96996 * 119.99717 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00495 * 9 7 2 24 24 H 1.08992 * 109.47413 * 300.00826 * 9 7 2 25 25 H 1.09001 * 109.46993 * 60.00038 * 10 9 7 26 26 H 1.09004 * 109.47298 * 300.00453 * 10 9 7 27 27 H 1.09001 * 109.46832 * 60.00325 * 11 10 9 28 28 H 1.08993 * 109.47194 * 299.99846 * 11 10 9 29 29 H 1.09001 * 109.46801 * 300.00272 * 12 11 10 30 30 H 1.09001 * 109.46998 * 59.99868 * 12 11 10 31 31 H 1.07997 * 120.00952 * 0.02562 * 15 14 13 32 32 H 1.08005 * 119.97389 * 180.27364 * 16 15 14 33 33 H 1.08002 * 119.99571 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5515 -2.6367 0.0001 12 6 6.0614 -4.0793 -0.0004 13 8 7.4904 -4.0793 -0.0009 14 6 8.1076 -5.2909 -0.0009 15 6 7.3529 -6.4544 0.0053 16 6 7.9813 -7.6848 0.0000 17 6 9.3641 -7.7573 0.0000 18 9 9.9766 -8.9615 0.0005 19 6 10.1194 -6.5973 -0.0009 20 6 9.4936 -5.3644 -0.0013 21 17 10.4407 -3.9095 -0.0018 22 1 -0.4849 0.8400 0.0004 23 1 3.8752 -0.6799 0.8895 24 1 3.8746 -0.6809 -0.8904 25 1 3.6578 -3.1507 -0.8897 26 1 3.6584 -3.1504 0.8903 27 1 5.9147 -2.1229 0.8901 28 1 5.9148 -2.1230 -0.8898 29 1 5.6980 -4.5934 0.8894 30 1 5.6981 -4.5928 -0.8906 31 1 6.2744 -6.3986 0.0098 32 1 7.3935 -8.5909 0.0004 33 1 11.1979 -6.6552 -0.0013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095733821.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:58 Heat of formation + Delta-G solvation = -85.480164 kcal Electronic energy + Delta-G solvation = -17421.874449 eV Core-core repulsion = 14194.705123 eV Total energy + Delta-G solvation = -3227.169326 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.18555 -40.43306 -37.80072 -36.62282 -34.96470 -32.48590 -31.43620 -30.22094 -28.94083 -25.52324 -23.59033 -22.71814 -21.44249 -20.23444 -18.61672 -17.70204 -17.17075 -16.65715 -16.45643 -15.85202 -15.25030 -14.87239 -14.43258 -14.41207 -14.12792 -13.78872 -13.21700 -13.04868 -12.66971 -12.13600 -12.07002 -11.96249 -11.51108 -11.43594 -11.17764 -10.99816 -10.83571 -10.57217 -9.97951 -9.79172 -9.67983 -9.42320 -9.22529 -8.56509 -8.40240 -6.07257 -4.05720 0.58231 0.75720 1.80570 2.89119 3.04355 3.29483 3.37158 3.40899 3.91499 4.25856 4.42033 4.43152 4.66519 4.88918 4.98993 5.03199 5.16050 5.27074 5.36155 5.47364 5.66458 5.68917 5.80175 5.81825 6.16876 6.23574 6.47825 6.58708 6.80030 7.07136 7.24356 7.37527 7.75977 8.50020 8.97088 9.55252 11.06168 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.032882 B = 0.003103 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.313453 B = 9022.117354 C = 9842.379218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.099 4.099 11 C -0.120 4.120 12 C 0.056 3.944 13 O -0.299 6.299 14 C 0.141 3.859 15 C -0.172 4.172 16 C -0.105 4.105 17 C 0.065 3.935 18 F -0.136 7.136 19 C -0.108 4.108 20 C -0.050 4.050 21 Cl -0.043 7.043 22 H 0.263 0.737 23 H 0.017 0.983 24 H 0.013 0.987 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.596 -14.604 0.027 25.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.157 4.157 12 C -0.019 4.019 13 O -0.212 6.212 14 C 0.093 3.907 15 C -0.191 4.191 16 C -0.124 4.124 17 C 0.045 3.955 18 F -0.115 7.115 19 C -0.128 4.128 20 C -0.077 4.077 21 Cl -0.014 7.014 22 H 0.073 0.927 23 H 0.035 0.965 24 H 0.031 0.969 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 20.612 -14.186 0.030 25.022 hybrid contribution 0.327 0.633 -0.025 0.712 sum 20.938 -13.553 0.005 24.942 Atomic orbital electron populations 1.69917 1.06328 1.26940 1.51104 1.25045 0.94746 0.99250 0.94513 0.86766 0.80378 0.83534 0.78550 1.20271 1.21386 1.18940 1.21141 0.89495 0.94472 1.50945 0.91054 1.19560 0.97110 0.91948 0.96462 1.21407 0.90302 1.00565 1.01407 1.21732 0.97899 0.92676 1.03414 1.23201 0.76132 1.00973 1.01576 1.86227 1.22970 1.24843 1.87130 1.18770 0.90444 0.86027 0.95448 1.21193 1.01194 0.90648 1.06039 1.21066 0.92630 0.99089 0.99586 1.17280 0.90619 0.80343 1.07236 1.91512 1.83291 1.42382 1.94331 1.20797 1.01255 0.89113 1.01586 1.19863 0.88957 0.88784 1.10142 1.98392 1.71201 1.34939 1.96887 0.92710 0.96471 0.96916 0.92482 0.92462 0.91121 0.91134 0.91595 0.91600 0.83174 0.83780 0.83205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 2 C 0.07 1.90 5.47 -17.81 -0.10 1.80 16 3 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 10 C -0.10 -1.80 5.15 -26.73 -0.14 -1.94 16 11 C -0.12 -1.78 5.58 -26.73 -0.15 -1.93 16 12 C 0.06 0.67 4.74 37.16 0.18 0.85 16 13 O -0.30 -3.88 9.60 -19.65 -0.19 -4.07 16 14 C 0.14 1.61 6.68 -39.21 -0.26 1.35 16 15 C -0.17 -1.62 9.04 -39.45 -0.36 -1.97 16 16 C -0.10 -0.89 10.02 -39.53 -0.40 -1.29 16 17 C 0.06 0.61 7.30 -39.43 -0.29 0.32 16 18 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 19 C -0.11 -1.01 9.80 -39.50 -0.39 -1.40 16 20 C -0.05 -0.54 6.33 -39.37 -0.25 -0.79 16 21 Cl -0.04 -0.48 28.50 -51.86 -1.48 -1.96 16 22 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 23 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 24 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.07 0.72 7.65 -51.93 -0.40 0.32 16 30 H 0.07 0.71 7.67 -51.93 -0.40 0.32 16 31 H 0.15 1.18 6.30 -52.49 -0.33 0.85 16 32 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 302.73 15.07 4.56 4.56 Total: -1.00 -30.44 302.73 -7.57 -38.01 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: -4.02 Total: -4.77 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -2.59 Total: -20.44 kcal Atomic # 7 Polarization: -27.75 SS G_CDS: 0.77 Total: -26.98 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.19 Total: -4.07 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.48 Total: -1.96 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.44 -7.57 -38.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095733821.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.474 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds