Wall clock time and date at job start Mon Mar 30 2020 01:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00104 * 2 1 4 4 H 1.48505 * 109.47149 * 269.99726 * 3 2 1 5 5 H 1.48501 * 109.47501 * 30.00071 * 3 2 1 6 6 H 1.48501 * 109.46930 * 150.00090 * 3 2 1 7 7 C 1.37885 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99816 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99966 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47188 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47131 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47036 * 179.97438 * 12 11 10 14 14 C 1.35970 * 116.99801 * 179.97438 * 13 12 11 15 15 C 1.38685 * 120.03379 * 359.72814 * 14 13 12 16 16 C 1.38158 * 119.97681 * 179.74436 * 15 14 13 17 17 C 1.38468 * 120.05330 * 0.55282 * 16 15 14 18 18 F 1.35100 * 119.96171 * 179.72169 * 17 16 15 19 19 C 1.38423 * 120.06965 * 359.70100 * 17 16 15 20 20 C 1.38265 * 120.01889 * 0.02562 * 19 17 16 21 21 Cl 1.73598 * 120.02625 * 179.97438 * 20 19 17 22 22 H 0.96996 * 119.99717 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00495 * 9 7 2 24 24 H 1.08992 * 109.47413 * 300.00826 * 9 7 2 25 25 H 1.09001 * 109.46993 * 60.00038 * 10 9 7 26 26 H 1.09004 * 109.47298 * 300.00453 * 10 9 7 27 27 H 1.09001 * 109.46832 * 60.00325 * 11 10 9 28 28 H 1.08993 * 109.47194 * 299.99846 * 11 10 9 29 29 H 1.09001 * 109.46801 * 300.00272 * 12 11 10 30 30 H 1.09001 * 109.46998 * 59.99868 * 12 11 10 31 31 H 1.07997 * 120.00952 * 0.02562 * 15 14 13 32 32 H 1.08005 * 119.97389 * 180.27364 * 16 15 14 33 33 H 1.08002 * 119.99571 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5515 -2.6367 0.0001 12 6 6.0614 -4.0793 -0.0004 13 8 7.4904 -4.0793 -0.0009 14 6 8.1076 -5.2909 -0.0009 15 6 7.3529 -6.4544 0.0053 16 6 7.9813 -7.6848 0.0000 17 6 9.3641 -7.7573 0.0000 18 9 9.9766 -8.9615 0.0005 19 6 10.1194 -6.5973 -0.0009 20 6 9.4936 -5.3644 -0.0013 21 17 10.4407 -3.9095 -0.0018 22 1 -0.4849 0.8400 0.0004 23 1 3.8752 -0.6799 0.8895 24 1 3.8746 -0.6809 -0.8904 25 1 3.6578 -3.1507 -0.8897 26 1 3.6584 -3.1504 0.8903 27 1 5.9147 -2.1229 0.8901 28 1 5.9148 -2.1230 -0.8898 29 1 5.6980 -4.5934 0.8894 30 1 5.6981 -4.5928 -0.8906 31 1 6.2744 -6.3986 0.0098 32 1 7.3935 -8.5909 0.0004 33 1 11.1979 -6.6552 -0.0013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095733821.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:58 Heat of formation + Delta-G solvation = -101.797312 kcal Electronic energy + Delta-G solvation = -17422.582014 eV Core-core repulsion = 14194.705123 eV Total energy + Delta-G solvation = -3227.876891 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.92179 -41.24457 -38.64821 -37.42323 -36.50259 -34.43520 -32.18004 -31.50417 -30.08433 -26.98524 -24.59287 -23.63937 -22.65104 -21.78233 -19.44709 -18.84136 -18.49130 -17.90901 -17.39466 -16.62952 -16.35326 -15.95255 -15.68389 -15.65650 -15.07187 -14.79516 -14.50373 -14.26354 -13.86049 -13.80366 -13.36613 -13.14528 -12.72691 -12.53170 -12.30678 -12.11268 -11.92448 -11.78748 -11.69053 -11.48908 -11.34049 -11.28125 -10.75432 -10.14343 -9.19555 -8.28960 -6.32694 -0.12902 0.00410 1.01693 1.36938 1.38606 1.50551 2.01641 2.31346 2.36921 3.06914 3.19710 3.55612 3.73862 3.96181 3.99361 4.00266 4.16476 4.34257 4.45567 4.52881 4.59539 4.76517 4.78869 4.97452 4.99931 5.08033 5.12678 5.18343 5.51488 5.56404 5.63069 5.68354 6.20328 6.29635 6.76090 7.32311 8.87777 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.032882 B = 0.003103 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.313453 B = 9022.117354 C = 9842.379218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.246 1.246 7 C -0.532 4.532 8 H 0.035 0.965 9 C -0.015 4.015 10 C -0.091 4.091 11 C -0.111 4.111 12 C 0.060 3.940 13 O -0.316 6.316 14 C 0.122 3.878 15 C -0.170 4.170 16 C -0.098 4.098 17 C 0.060 3.940 18 F -0.139 7.139 19 C -0.106 4.106 20 C -0.063 4.063 21 Cl -0.052 7.052 22 H 0.266 0.734 23 H 0.019 0.981 24 H 0.018 0.982 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.279 -15.092 0.014 26.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.170 1.170 7 C -0.570 4.570 8 H 0.053 0.947 9 C -0.052 4.052 10 C -0.129 4.129 11 C -0.149 4.149 12 C -0.014 4.014 13 O -0.229 6.229 14 C 0.075 3.925 15 C -0.189 4.189 16 C -0.117 4.117 17 C 0.040 3.960 18 F -0.117 7.117 19 C -0.125 4.125 20 C -0.090 4.090 21 Cl -0.023 7.023 22 H 0.075 0.925 23 H 0.038 0.962 24 H 0.036 0.964 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.184 0.816 32 H 0.187 0.813 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 22.317 -14.696 0.016 26.721 hybrid contribution -0.226 0.655 -0.022 0.693 sum 22.091 -14.041 -0.006 26.176 Atomic orbital electron populations 1.70071 1.08306 1.28125 1.52873 1.26037 0.95609 1.03584 0.94251 0.85662 0.79528 0.78310 0.79183 1.19222 1.21129 1.16958 1.21553 0.92282 0.93136 1.50064 0.94686 1.19550 0.93712 0.95391 0.96582 1.21226 0.92802 0.97319 1.01556 1.21503 0.95209 0.94847 1.03313 1.23061 0.76210 0.99120 1.03040 1.86161 1.23038 1.25975 1.87739 1.18982 0.90735 0.86092 0.96675 1.21388 1.01936 0.90182 1.05356 1.21346 0.92470 0.99783 0.98064 1.17425 0.91108 0.80196 1.07264 1.91511 1.83408 1.42470 1.94356 1.20947 1.02142 0.88619 1.00825 1.19999 0.88962 0.88945 1.11134 1.98383 1.71386 1.35569 1.97004 0.92548 0.96245 0.96368 0.92381 0.92402 0.91296 0.91236 0.90174 0.90170 0.81564 0.81300 0.81729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 2 C 0.00 0.10 5.47 84.66 0.46 0.56 16 3 Si 0.95 44.13 27.47 68.60 1.88 46.01 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 7 C -0.53 -30.27 9.66 25.60 0.25 -30.03 16 8 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 9 C -0.01 -0.68 4.04 29.85 0.12 -0.55 16 10 C -0.09 -3.20 5.15 30.59 0.16 -3.05 16 11 C -0.11 -3.08 5.58 30.60 0.17 -2.91 16 12 C 0.06 1.31 4.74 71.98 0.34 1.65 16 13 O -0.32 -7.62 9.60 -93.22 -0.89 -8.52 16 14 C 0.12 2.58 6.68 22.51 0.15 2.73 16 15 C -0.17 -2.76 9.04 22.36 0.20 -2.56 16 16 C -0.10 -1.40 10.02 22.31 0.22 -1.18 16 17 C 0.06 0.99 7.30 22.37 0.16 1.15 16 18 F -0.14 -2.42 17.27 44.97 0.78 -1.65 16 19 C -0.11 -1.80 9.80 22.32 0.22 -1.58 16 20 C -0.06 -1.29 6.33 22.41 0.14 -1.14 16 21 Cl -0.05 -1.12 28.50 -2.72 -0.08 -1.20 16 22 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 23 H 0.02 0.86 7.20 -2.39 -0.02 0.85 16 24 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 25 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 26 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.08 1.52 7.65 -2.39 -0.02 1.50 16 30 H 0.08 1.52 7.67 -2.39 -0.02 1.50 16 31 H 0.17 2.10 6.30 -2.91 -0.02 2.08 16 32 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 33 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -65.76 302.73 5.64 -60.12 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: 1.06 Total: 1.56 kcal Atomic # 6 Polarization: -39.51 SS G_CDS: 2.60 Total: -36.91 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.30 Total: -59.41 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.89 Total: -8.52 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.78 Total: -1.65 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.01 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -65.76 5.64 -60.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095733821.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.677 kcal (2) G-P(sol) polarization free energy of solvation -65.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds