Wall clock time and date at job start Mon Mar 30 2020 01:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47078 * 2 1 4 4 C 1.50695 * 109.47539 * 119.99905 * 2 1 3 5 5 H 1.08005 * 119.99758 * 119.99321 * 4 2 1 6 6 C 1.37874 * 120.00355 * 300.00499 * 4 2 1 7 7 N 1.31512 * 119.99744 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00340 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46871 * 59.99645 * 8 6 4 10 10 H 1.48501 * 109.47268 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47041 * 299.99701 * 8 6 4 12 12 N 1.46900 * 109.47140 * 240.00554 * 2 1 3 13 13 C 1.40022 * 111.00234 * 87.05114 * 12 2 1 14 14 C 1.38987 * 120.08628 * 82.63048 * 13 12 2 15 15 F 1.35106 * 120.04163 * 359.95364 * 14 13 12 16 16 C 1.38323 * 119.91398 * 179.97438 * 14 13 12 17 17 C 1.38268 * 120.08784 * 359.97438 * 16 14 13 18 18 N 1.48027 * 119.91709 * 179.72328 * 17 16 14 19 19 O 1.21800 * 119.99817 * 359.97438 * 18 17 16 20 20 O 1.21801 * 120.00402 * 180.02562 * 18 17 16 21 21 C 1.38274 * 120.17347 * 0.02562 * 17 16 14 22 22 C 1.38333 * 120.08105 * 0.02562 * 21 17 16 23 23 F 1.35100 * 120.04092 * 180.02562 * 22 21 17 24 24 H 1.09005 * 109.47174 * 185.61405 * 1 2 3 25 25 H 1.09006 * 109.47032 * 305.60816 * 1 2 3 26 26 H 1.09000 * 109.47293 * 65.61292 * 1 2 3 27 27 H 0.97002 * 120.00226 * 180.02562 * 7 6 4 28 28 H 1.00903 * 110.99510 * 323.09627 * 12 2 1 29 29 H 1.08007 * 119.95495 * 180.02562 * 16 14 13 30 30 H 1.08001 * 119.96151 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1209 4.0080 10 1 1.8271 -0.4200 5.2205 11 1 1.8260 -2.5203 4.0077 12 7 2.0196 -0.6924 -1.1995 13 6 2.1235 0.1905 -2.2813 14 6 3.2475 0.9967 -2.4173 15 9 4.2417 0.9304 -1.5049 16 6 3.3466 1.8672 -3.4876 17 6 2.3297 1.9357 -4.4220 18 7 2.4369 2.8730 -5.5626 19 8 3.4199 3.5831 -5.6769 20 8 1.5418 2.9350 -6.3863 21 6 1.2098 1.1353 -4.2902 22 6 1.1028 0.2630 -3.2220 23 9 0.0086 -0.5190 -3.0944 24 1 -0.3634 -1.0228 0.1005 25 1 -0.3633 0.5984 0.8356 26 1 -0.3634 0.4243 -0.9360 27 1 0.7095 1.1617 3.4844 28 1 1.4299 -1.4782 -1.4294 29 1 4.2200 2.4937 -3.5942 30 1 0.4177 1.1913 -5.0223 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121704406.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:26 Heat of formation + Delta-G solvation = -62.477744 kcal Electronic energy + Delta-G solvation = -20771.515337 eV Core-core repulsion = 17013.466752 eV Total energy + Delta-G solvation = -3758.048585 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.22209 -48.83918 -42.23082 -39.33669 -36.63340 -36.45700 -33.15236 -30.83287 -30.81866 -28.45857 -25.73969 -25.33114 -23.39763 -22.42281 -20.75913 -19.69464 -18.91945 -17.68809 -17.61063 -17.00975 -16.89914 -16.40567 -15.97964 -15.79955 -15.29080 -14.94228 -14.83152 -13.68710 -13.22244 -13.09191 -12.89879 -12.46900 -12.21358 -11.96200 -11.62552 -11.31421 -11.28712 -11.20742 -11.15714 -10.92230 -10.51282 -10.32794 -9.88703 -9.23013 -9.12489 -8.62076 -8.01079 -6.24561 -4.30296 -0.32524 0.55002 1.17983 1.22374 2.86071 3.21610 3.26398 3.28930 3.57442 3.86276 4.08386 4.28320 4.34338 4.46885 4.75569 5.08336 5.21768 5.26685 5.42242 5.60866 6.03876 6.25290 6.38310 6.45101 6.55850 6.85112 7.24218 7.49710 7.57412 7.72852 7.88343 8.09048 8.73872 9.35880 10.82976 Molecular weight = 272.08amu Principal moments of inertia in cm(-1) A = 0.030637 B = 0.005063 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.705448 B = 5529.055941 C = 5981.571103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.219 3.781 3 H 0.042 0.958 4 C -0.510 4.510 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.906 3.094 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.625 5.625 13 C 0.126 3.874 14 C 0.127 3.873 15 F -0.098 7.098 16 C -0.087 4.087 17 C -0.030 4.030 18 N 0.038 4.962 19 O -0.158 6.158 20 O -0.161 6.161 21 C -0.082 4.082 22 C 0.072 3.928 23 F -0.114 7.114 24 H 0.040 0.960 25 H 0.096 0.904 26 H 0.011 0.989 27 H 0.265 0.735 28 H 0.357 0.643 29 H 0.169 0.831 30 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.935 0.400 -11.266 11.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.117 3.883 3 H 0.060 0.940 4 C -0.548 4.548 5 H 0.086 0.914 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.733 3.267 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.249 5.249 13 C 0.021 3.979 14 C 0.104 3.896 15 F -0.076 7.076 16 C -0.108 4.108 17 C -0.115 4.115 18 N 0.557 4.443 19 O -0.374 6.374 20 O -0.376 6.376 21 C -0.103 4.103 22 C 0.048 3.952 23 F -0.092 7.092 24 H 0.059 0.941 25 H 0.115 0.885 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.178 0.822 29 H 0.187 0.813 30 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.435 0.033 -10.230 10.330 hybrid contribution -0.629 -0.298 0.512 0.864 sum 0.806 -0.265 -9.718 9.755 Atomic orbital electron populations 1.22486 0.98543 1.01283 1.00416 1.19532 0.90606 0.94399 0.83790 0.94029 1.20952 1.31771 1.13167 0.88922 0.91404 1.24932 0.94844 0.95044 0.99234 1.69858 1.36348 1.22727 1.24187 0.86427 0.79316 0.79545 0.81389 1.20021 1.21201 1.20114 1.58307 1.55248 1.08603 1.02694 1.19591 0.91062 0.93210 0.93989 1.16571 0.86115 0.98135 0.88760 1.91645 1.57302 1.94890 1.63798 1.20774 0.99769 0.98468 0.91742 1.20044 0.99357 0.99749 0.92350 1.43325 0.99892 0.99972 1.01106 1.94545 1.22032 1.39623 1.81205 1.94539 1.33145 1.73421 1.36524 1.20702 0.97787 0.93846 0.97947 1.17389 0.84761 0.95057 0.98023 1.91571 1.50197 1.71869 1.95549 0.94126 0.88548 0.96998 0.92495 0.82173 0.81313 0.81662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.68 8.84 37.15 0.33 -3.35 16 2 C 0.22 5.01 2.54 -68.87 -0.17 4.84 16 3 H 0.04 1.05 7.66 -51.93 -0.40 0.66 16 4 C -0.51 -13.05 8.84 -34.44 -0.30 -13.36 16 5 H 0.07 1.74 7.81 -52.48 -0.41 1.33 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -23.99 11.38 55.43 0.63 -23.35 16 8 Si 0.91 20.34 29.54 -169.99 -5.02 15.32 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.62 -11.94 6.07 -52.90 -0.32 -12.26 16 13 C 0.13 2.08 5.08 -83.56 -0.42 1.65 16 14 C 0.13 1.99 7.11 -39.27 -0.28 1.72 16 15 F -0.10 -1.74 17.08 2.25 0.04 -1.70 16 16 C -0.09 -1.14 9.52 -39.54 -0.38 -1.52 16 17 C -0.03 -0.40 6.85 -79.92 -0.55 -0.95 16 18 N 0.04 0.54 4.45 33.98 0.15 0.69 16 19 O -0.16 -2.30 18.44 -29.46 -0.54 -2.84 16 20 O -0.16 -2.32 18.44 -29.46 -0.54 -2.87 16 21 C -0.08 -1.04 9.53 -39.53 -0.38 -1.42 16 22 C 0.07 1.03 6.75 -39.27 -0.26 0.77 16 23 F -0.11 -1.66 15.49 2.25 0.03 -1.62 16 24 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.10 2.36 6.24 -51.93 -0.32 2.04 16 26 H 0.01 0.22 6.43 -51.93 -0.33 -0.11 16 27 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.36 6.29 7.70 -39.29 -0.30 5.99 16 29 H 0.17 1.89 7.60 -52.48 -0.40 1.49 16 30 H 0.17 1.76 7.60 -52.49 -0.40 1.36 16 LS Contribution 280.09 15.07 4.22 4.22 Total: -1.00 -26.33 280.09 -5.99 -32.32 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -2.12 Total: 2.21 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -2.51 Total: -10.11 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.46 Total: -34.92 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -1.09 Total: -5.71 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.07 Total: -3.33 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -26.33 -5.99 -32.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121704406.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.156 kcal (2) G-P(sol) polarization free energy of solvation -26.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds