Wall clock time and date at job start Mon Mar 30 2020 01:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46766 * 2 1 4 4 C 1.50701 * 109.46778 * 239.99847 * 2 1 3 5 5 H 1.07995 * 120.00083 * 239.99657 * 4 2 1 6 6 C 1.37881 * 120.00076 * 60.00615 * 4 2 1 7 7 N 1.31516 * 119.99860 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00219 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47286 * 59.99236 * 8 6 4 10 10 H 1.48501 * 109.47170 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.47035 * 299.99555 * 8 6 4 12 12 N 1.46898 * 109.46959 * 120.00209 * 2 1 3 13 13 C 1.40021 * 110.99800 * 274.99690 * 12 2 1 14 14 C 1.38995 * 120.08180 * 120.00482 * 13 12 2 15 15 F 1.35095 * 120.04544 * 359.69535 * 14 13 12 16 16 C 1.38331 * 119.91169 * 179.97438 * 14 13 12 17 17 C 1.38274 * 120.08603 * 359.97430 * 16 14 13 18 18 N 1.48026 * 119.91398 * 180.02562 * 17 16 14 19 19 O 1.21798 * 119.99876 * 179.97438 * 18 17 16 20 20 O 1.21796 * 120.00175 * 0.02562 * 18 17 16 21 21 C 1.38281 * 120.17221 * 0.04500 * 17 16 14 22 22 C 1.38326 * 120.08557 * 359.95599 * 21 17 16 23 23 F 1.35092 * 120.04657 * 180.02562 * 22 21 17 24 24 H 1.08993 * 109.47235 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46853 * 299.99821 * 1 2 3 26 26 H 1.09000 * 109.47009 * 59.99583 * 1 2 3 27 27 H 0.96992 * 120.00208 * 180.02562 * 7 6 4 28 28 H 1.00903 * 111.00354 * 38.95409 * 12 2 1 29 29 H 1.08000 * 119.95886 * 179.97438 * 16 14 13 30 30 H 1.07999 * 119.95315 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8280 -2.5198 -4.0082 10 1 1.8269 -0.4198 -5.2205 11 1 3.8075 -1.1190 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 2.0796 0.1797 2.2931 14 6 1.3360 -0.0853 3.4371 15 9 0.5491 -1.1820 3.4934 16 6 1.3982 0.7785 4.5158 17 6 2.1992 1.9041 4.4571 18 7 2.2633 2.8256 5.6138 19 8 2.9687 3.8172 5.5640 20 8 1.6115 2.5917 6.6157 21 6 2.9401 2.1714 3.3206 22 6 2.8832 1.3124 2.2378 23 9 3.6078 1.5740 1.1281 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.7083 1.1610 -3.4843 28 1 1.4496 -1.4980 1.4100 29 1 0.8204 0.5735 5.4049 30 1 3.5642 3.0517 3.2784 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121704560.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:29 Heat of formation + Delta-G solvation = -63.743516 kcal Electronic energy + Delta-G solvation = -20787.018489 eV Core-core repulsion = 17028.915016 eV Total energy + Delta-G solvation = -3758.103473 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.19705 -48.83133 -42.15678 -39.32064 -36.56416 -36.53895 -33.20213 -30.83810 -30.75734 -28.49556 -25.74315 -25.36094 -23.48174 -22.37818 -20.82177 -19.63403 -18.86474 -17.79645 -17.55995 -16.86640 -16.79993 -16.46805 -15.92136 -15.75733 -15.25104 -14.96822 -14.84777 -13.71286 -13.25170 -13.11097 -12.98382 -12.43761 -12.10532 -12.05682 -11.56034 -11.42268 -11.25407 -11.18632 -11.14965 -10.94522 -10.61046 -10.38456 -10.08572 -9.27347 -9.18084 -8.64321 -7.88123 -6.28420 -4.35194 -0.23547 0.59415 1.25287 1.31234 2.91107 3.19205 3.24269 3.26511 3.58813 3.92251 4.06796 4.25752 4.35924 4.45250 4.80695 5.04453 5.24484 5.29899 5.41240 5.65153 6.04658 6.25182 6.36272 6.39735 6.49931 6.74835 7.16106 7.42260 7.62744 7.64784 7.83297 8.01240 8.68216 9.31283 10.78842 Molecular weight = 272.08amu Principal moments of inertia in cm(-1) A = 0.031724 B = 0.005046 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.391174 B = 5547.289141 C = 6016.948951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.207 3.793 3 H 0.057 0.943 4 C -0.513 4.513 5 H 0.067 0.933 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.906 3.094 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.605 5.605 13 C 0.141 3.859 14 C 0.053 3.947 15 F -0.118 7.118 16 C -0.067 4.067 17 C -0.050 4.050 18 N 0.042 4.958 19 O -0.163 6.163 20 O -0.167 6.167 21 C -0.072 4.072 22 C 0.101 3.899 23 F -0.098 7.098 24 H 0.038 0.962 25 H 0.010 0.990 26 H 0.103 0.897 27 H 0.266 0.734 28 H 0.362 0.638 29 H 0.165 0.835 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 0.246 10.650 10.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.075 0.925 4 C -0.552 4.552 5 H 0.085 0.915 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.734 3.266 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.224 5.224 13 C 0.031 3.969 14 C 0.029 3.971 15 F -0.096 7.096 16 C -0.088 4.088 17 C -0.135 4.135 18 N 0.559 4.441 19 O -0.378 6.378 20 O -0.381 6.381 21 C -0.093 4.093 22 C 0.077 3.923 23 F -0.076 7.076 24 H 0.057 0.943 25 H 0.029 0.971 26 H 0.121 0.879 27 H 0.076 0.924 28 H 0.185 0.815 29 H 0.183 0.817 30 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.124 -0.127 9.577 9.643 hybrid contribution -0.513 -0.415 -0.518 0.839 sum 0.611 -0.542 9.059 9.096 Atomic orbital electron populations 1.22500 0.98421 1.00340 1.01657 1.19768 0.90749 0.95398 0.83615 0.92508 1.20913 1.32020 1.13270 0.88972 0.91456 1.24918 0.94773 0.95003 0.99243 1.69833 1.36128 1.22638 1.24304 0.86414 0.79341 0.79525 0.81342 1.20106 1.21120 1.19991 1.57872 1.52750 1.08530 1.03199 1.19655 0.91981 0.91914 0.93304 1.16860 0.96005 0.88413 0.95825 1.91540 1.71591 1.50076 1.96408 1.20622 0.97415 0.91491 0.99263 1.19946 1.09034 0.95472 0.89079 1.43294 0.98603 1.00584 1.01588 1.94540 1.37689 1.17192 1.88370 1.94526 1.42649 1.79703 1.21180 1.20729 0.98352 1.00458 0.89757 1.16374 0.96060 0.94945 0.84934 1.91652 1.74168 1.93234 1.48580 0.94313 0.97130 0.87876 0.92385 0.81489 0.81711 0.81420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.69 8.92 37.16 0.33 -3.36 16 2 C 0.21 4.68 2.23 -68.86 -0.15 4.52 16 3 H 0.06 1.40 5.83 -51.93 -0.30 1.10 16 4 C -0.51 -13.00 8.84 -34.44 -0.30 -13.31 16 5 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -23.63 11.32 55.43 0.63 -23.00 16 8 Si 0.91 20.13 29.54 -169.99 -5.02 15.11 16 9 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 12 N -0.60 -11.50 6.25 -52.89 -0.33 -11.83 16 13 C 0.14 2.33 5.56 -83.56 -0.46 1.86 16 14 C 0.05 0.76 7.29 -39.27 -0.29 0.47 16 15 F -0.12 -1.65 16.26 2.25 0.04 -1.61 16 16 C -0.07 -0.85 9.53 -39.53 -0.38 -1.23 16 17 C -0.05 -0.67 6.85 -79.91 -0.55 -1.22 16 18 N 0.04 0.60 4.45 33.98 0.15 0.76 16 19 O -0.16 -2.44 18.44 -29.46 -0.54 -2.98 16 20 O -0.17 -2.44 18.44 -29.46 -0.54 -2.99 16 21 C -0.07 -0.98 9.53 -39.53 -0.38 -1.36 16 22 C 0.10 1.63 6.76 -39.27 -0.27 1.36 16 23 F -0.10 -1.83 15.31 2.25 0.03 -1.80 16 24 H 0.04 0.79 8.13 -51.93 -0.42 0.37 16 25 H 0.01 0.19 8.03 -51.93 -0.42 -0.22 16 26 H 0.10 2.50 6.07 -51.93 -0.32 2.19 16 27 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.36 6.34 7.40 -39.29 -0.29 6.05 16 29 H 0.17 1.74 7.60 -52.49 -0.40 1.34 16 30 H 0.17 1.98 7.60 -52.49 -0.40 1.58 16 LS Contribution 278.92 15.07 4.20 4.20 Total: -1.00 -25.96 278.92 -6.01 -31.98 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -2.09 Total: 2.88 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -2.54 Total: -10.72 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.45 Total: -34.08 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -1.09 Total: -5.97 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.07 Total: -3.41 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -25.96 -6.01 -31.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121704560.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.767 kcal (2) G-P(sol) polarization free energy of solvation -25.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds