Wall clock time and date at job start Mon Mar 30 2020 01:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46766 * 2 1 4 4 C 1.50701 * 109.46778 * 239.99847 * 2 1 3 5 5 H 1.07995 * 120.00083 * 239.99657 * 4 2 1 6 6 C 1.37881 * 120.00076 * 60.00615 * 4 2 1 7 7 N 1.31516 * 119.99860 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00219 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47286 * 59.99236 * 8 6 4 10 10 H 1.48501 * 109.47170 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.47035 * 299.99555 * 8 6 4 12 12 N 1.46898 * 109.46959 * 120.00209 * 2 1 3 13 13 C 1.40021 * 110.99800 * 274.99690 * 12 2 1 14 14 C 1.38995 * 120.08180 * 120.00482 * 13 12 2 15 15 F 1.35095 * 120.04544 * 359.69535 * 14 13 12 16 16 C 1.38331 * 119.91169 * 179.97438 * 14 13 12 17 17 C 1.38274 * 120.08603 * 359.97430 * 16 14 13 18 18 N 1.48026 * 119.91398 * 180.02562 * 17 16 14 19 19 O 1.21798 * 119.99876 * 179.97438 * 18 17 16 20 20 O 1.21796 * 120.00175 * 0.02562 * 18 17 16 21 21 C 1.38281 * 120.17221 * 0.04500 * 17 16 14 22 22 C 1.38326 * 120.08557 * 359.95599 * 21 17 16 23 23 F 1.35092 * 120.04657 * 180.02562 * 22 21 17 24 24 H 1.08993 * 109.47235 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46853 * 299.99821 * 1 2 3 26 26 H 1.09000 * 109.47009 * 59.99583 * 1 2 3 27 27 H 0.96992 * 120.00208 * 180.02562 * 7 6 4 28 28 H 1.00903 * 111.00354 * 38.95409 * 12 2 1 29 29 H 1.08000 * 119.95886 * 179.97438 * 16 14 13 30 30 H 1.07999 * 119.95315 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8280 -2.5198 -4.0082 10 1 1.8269 -0.4198 -5.2205 11 1 3.8075 -1.1190 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 2.0796 0.1797 2.2931 14 6 1.3360 -0.0853 3.4371 15 9 0.5491 -1.1820 3.4934 16 6 1.3982 0.7785 4.5158 17 6 2.1992 1.9041 4.4571 18 7 2.2633 2.8256 5.6138 19 8 2.9687 3.8172 5.5640 20 8 1.6115 2.5917 6.6157 21 6 2.9401 2.1714 3.3206 22 6 2.8832 1.3124 2.2378 23 9 3.6078 1.5740 1.1281 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.7083 1.1610 -3.4843 28 1 1.4496 -1.4980 1.4100 29 1 0.8204 0.5735 5.4049 30 1 3.5642 3.0517 3.2784 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121704560.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:28 Heat of formation + Delta-G solvation = -77.336284 kcal Electronic energy + Delta-G solvation = -20787.607916 eV Core-core repulsion = 17028.915016 eV Total energy + Delta-G solvation = -3758.692900 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.33876 -50.18251 -43.31515 -40.57207 -38.01831 -37.72736 -34.95296 -32.33040 -31.93032 -29.98757 -27.41053 -26.85627 -24.70577 -23.63726 -22.44999 -20.81152 -20.05766 -19.21073 -18.71060 -18.25249 -18.05219 -17.91188 -17.29260 -16.98732 -16.71527 -16.54971 -16.10309 -15.33957 -14.72668 -14.57959 -14.25543 -13.71673 -13.63368 -13.39972 -13.11806 -12.95568 -12.74965 -12.68853 -12.42310 -12.32202 -12.31397 -12.15762 -11.69805 -11.00313 -10.57715 -10.33197 -9.29341 -8.22089 -6.34447 -1.41652 -0.55185 0.05264 0.14342 1.42789 1.43639 1.51245 1.73206 2.34706 2.41363 2.74081 2.84867 3.09018 3.16231 3.33609 3.64921 4.05050 4.12512 4.29330 4.50429 4.50974 4.66811 4.72785 4.86865 5.09568 5.27531 5.48316 5.55758 5.97942 6.08158 6.23104 6.46465 6.72742 7.35014 8.83970 Molecular weight = 272.08amu Principal moments of inertia in cm(-1) A = 0.031724 B = 0.005046 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.391174 B = 5547.289141 C = 6016.948951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.214 3.786 3 H 0.033 0.967 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.019 3.981 7 N -0.916 5.916 8 Si 0.963 3.037 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.275 1.275 12 N -0.615 5.615 13 C 0.121 3.879 14 C 0.064 3.936 15 F -0.114 7.114 16 C -0.048 4.048 17 C -0.044 4.044 18 N 0.041 4.959 19 O -0.174 6.174 20 O -0.157 6.157 21 C -0.057 4.057 22 C 0.084 3.916 23 F -0.119 7.119 24 H 0.044 0.956 25 H 0.027 0.973 26 H 0.075 0.925 27 H 0.266 0.734 28 H 0.367 0.633 29 H 0.194 0.806 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.400 -0.035 12.085 12.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.110 3.890 3 H 0.051 0.949 4 C -0.566 4.566 5 H 0.079 0.921 6 C -0.181 4.181 7 N -0.555 5.555 8 Si 0.788 3.212 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.200 1.200 12 N -0.236 5.236 13 C 0.014 3.986 14 C 0.040 3.960 15 F -0.092 7.092 16 C -0.069 4.069 17 C -0.129 4.129 18 N 0.559 4.441 19 O -0.386 6.386 20 O -0.374 6.374 21 C -0.077 4.077 22 C 0.060 3.940 23 F -0.097 7.097 24 H 0.063 0.937 25 H 0.046 0.954 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.191 0.809 29 H 0.211 0.789 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.936 -0.392 11.036 11.082 hybrid contribution -0.469 -0.276 -0.782 0.953 sum 0.466 -0.668 10.253 10.286 Atomic orbital electron populations 1.22308 0.97945 1.00476 1.01089 1.19418 0.91055 0.94045 0.84490 0.94942 1.21230 1.31804 1.13171 0.90436 0.92144 1.25632 0.95024 0.95655 1.01795 1.69951 1.37104 1.23741 1.24660 0.85533 0.78617 0.78748 0.78290 1.19411 1.20906 1.20021 1.57647 1.53853 1.09037 1.03038 1.19721 0.93194 0.92280 0.93406 1.16753 0.95420 0.88533 0.95270 1.91558 1.71375 1.49953 1.96336 1.20832 0.96437 0.90157 0.99441 1.19999 1.08757 0.95455 0.88708 1.43343 0.98551 1.00587 1.01643 1.94559 1.38062 1.17477 1.88501 1.94527 1.42233 1.79496 1.21157 1.20806 0.97845 1.00224 0.88832 1.16579 0.96591 0.95722 0.85072 1.91596 1.74801 1.93462 1.49863 0.93735 0.95359 0.90631 0.92521 0.80885 0.78862 0.79683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.90 8.92 71.98 0.64 -6.26 16 2 C 0.21 9.78 2.23 44.17 0.10 9.88 16 3 H 0.03 1.65 5.83 -2.39 -0.01 1.64 16 4 C -0.53 -27.11 8.84 25.60 0.23 -26.88 16 5 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.92 -49.38 11.32 21.45 0.24 -49.14 16 8 Si 0.96 41.46 29.54 68.60 2.03 43.48 16 9 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 12 N -0.62 -23.34 6.25 -321.25 -2.01 -25.35 16 13 C 0.12 3.91 5.56 38.20 0.21 4.12 16 14 C 0.06 1.68 7.29 22.47 0.16 1.85 16 15 F -0.11 -2.91 16.26 44.97 0.73 -2.18 16 16 C -0.05 -1.06 9.53 22.30 0.21 -0.85 16 17 C -0.04 -1.06 6.85 36.39 0.25 -0.81 16 18 N 0.04 1.07 4.45 -46.41 -0.21 0.86 16 19 O -0.17 -4.78 18.44 18.89 0.35 -4.43 16 20 O -0.16 -4.09 18.44 18.89 0.35 -3.74 16 21 C -0.06 -1.44 9.53 22.30 0.21 -1.23 16 22 C 0.08 2.66 6.76 22.47 0.15 2.81 16 23 F -0.12 -4.52 15.31 44.97 0.69 -3.83 16 24 H 0.04 1.82 8.13 -2.39 -0.02 1.80 16 25 H 0.03 1.07 8.03 -2.39 -0.02 1.05 16 26 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 27 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 28 H 0.37 12.71 7.40 -89.69 -0.66 12.05 16 29 H 0.19 3.21 7.60 -2.91 -0.02 3.18 16 30 H 0.19 4.02 7.60 -2.91 -0.02 4.00 16 Total: -1.00 -55.01 278.92 5.34 -49.67 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.55 Total: 10.60 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 2.62 Total: -15.94 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -1.97 Total: -73.62 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.70 Total: -8.17 kcal Atomic # 9 Polarization: -7.43 SS G_CDS: 1.42 Total: -6.01 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -55.01 5.34 -49.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121704560.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.666 kcal (2) G-P(sol) polarization free energy of solvation -55.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds