Wall clock time and date at job start Mon Mar 30 2020 01:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31325 * 1 3 3 Si 1.86801 * 120.00036 * 2 1 4 4 H 1.48493 * 109.46960 * 269.99630 * 3 2 1 5 5 H 1.48498 * 109.47199 * 29.99950 * 3 2 1 6 6 H 1.48505 * 109.46694 * 149.99717 * 3 2 1 7 7 C 1.39108 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99665 * 0.02562 * 7 2 1 9 9 N 1.36792 * 120.00272 * 180.02562 * 7 2 1 10 10 C 1.34770 * 120.00315 * 180.02562 * 9 7 2 11 11 O 1.21570 * 119.99863 * 359.97438 * 10 9 7 12 12 C 1.48000 * 120.00436 * 180.02562 * 10 9 7 13 13 C 1.40061 * 120.89821 * 359.97414 * 12 10 9 14 14 C 1.37928 * 119.12721 * 180.02562 * 13 12 10 15 15 N 1.31936 * 120.98652 * 359.74473 * 14 13 12 16 16 C 1.32206 * 121.98597 * 0.52491 * 15 14 13 17 17 O 1.35682 * 119.61981 * 179.74698 * 16 15 14 18 18 C 1.42906 * 116.99767 * 359.73589 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 F 1.39897 * 109.47129 * 299.99607 * 19 18 17 21 21 F 1.39903 * 109.46814 * 60.00100 * 19 18 17 22 22 C 1.38851 * 120.75809 * 359.48153 * 16 15 14 23 23 H 0.96996 * 119.99867 * 0.02562 * 1 2 3 24 24 H 0.97003 * 119.99862 * 0.02562 * 9 7 2 25 25 H 1.08003 * 120.43664 * 0.02562 * 13 12 10 26 26 H 1.07999 * 119.51016 * 180.02562 * 14 13 12 27 27 H 1.09000 * 109.47490 * 59.99587 * 18 17 16 28 28 H 1.09001 * 109.47232 * 299.98941 * 18 17 16 29 29 H 1.09001 * 109.47002 * 179.97438 * 19 18 17 30 30 H 1.08001 * 120.52825 * 180.27590 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.4948 2.0463 -1.4000 5 1 1.4447 2.6527 0.7000 6 1 3.5448 1.4401 0.7001 7 6 2.0088 -1.2047 0.0005 8 1 1.4688 -2.1400 0.0005 9 7 3.3767 -1.2047 0.0011 10 6 4.0506 -2.3719 0.0011 11 8 3.4428 -3.4247 0.0011 12 6 5.5306 -2.3720 0.0022 13 6 6.2499 -1.1702 0.0028 14 6 7.6285 -1.2128 0.0033 15 7 8.2724 -2.3644 0.0083 16 6 7.6355 -3.5229 0.0028 17 8 8.3461 -4.6788 0.0032 18 6 9.7706 -4.5646 0.0038 19 6 10.3941 -5.9619 0.0048 20 9 9.9815 -6.6559 1.1472 21 9 9.9825 -6.6570 -1.1374 22 6 6.2478 -3.5704 0.0021 23 1 -0.4850 0.8400 -0.0004 24 1 3.8617 -0.3647 0.0014 25 1 5.7319 -0.2225 0.0028 26 1 8.1893 -0.2899 0.0041 27 1 10.0914 -4.0233 0.8938 28 1 10.0921 -4.0236 -0.8862 29 1 11.4807 -5.8748 0.0048 30 1 5.7313 -4.5189 0.0021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123092843.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:53 Heat of formation + Delta-G solvation = -133.837910 kcal Electronic energy + Delta-G solvation = -19837.784545 eV Core-core repulsion = 16076.641551 eV Total energy + Delta-G solvation = -3761.142994 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.15600 -47.18852 -40.59118 -38.71501 -37.49891 -34.31408 -32.43700 -31.87135 -31.29571 -29.48316 -25.96555 -24.10056 -23.16810 -22.71011 -20.13696 -19.20120 -18.16007 -17.73046 -17.45192 -17.03658 -16.32970 -15.91351 -15.78844 -15.13251 -14.87927 -14.30906 -14.14736 -13.91059 -13.64518 -13.54126 -13.49145 -13.11710 -13.01135 -12.54750 -12.37215 -11.75427 -11.44512 -11.35184 -11.28972 -10.78284 -10.22706 -9.91053 -9.77037 -9.51763 -8.78667 -8.49347 -8.44352 -6.60507 -4.02346 1.00972 1.26765 2.62723 2.87122 2.92262 3.00446 3.47652 3.50177 3.85154 3.87298 4.17558 4.21873 4.24090 4.32061 4.63548 4.98088 5.07804 5.10272 5.12198 5.19695 5.30872 5.47778 5.88249 6.03712 6.30953 6.45507 7.14967 7.28470 7.83885 7.89382 8.32165 8.67735 9.13132 9.59014 10.50360 Molecular weight = 272.08amu Principal moments of inertia in cm(-1) A = 0.040445 B = 0.003756 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.137944 B = 7452.640856 C = 7964.970321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.266 1.266 7 C -0.298 4.298 8 H 0.127 0.873 9 N -0.557 5.557 10 C 0.465 3.535 11 O -0.572 6.572 12 C -0.016 4.016 13 C -0.199 4.199 14 C 0.135 3.865 15 N -0.547 5.547 16 C 0.313 3.687 17 O -0.295 6.295 18 C 0.020 3.980 19 C 0.270 3.730 20 F -0.199 7.199 21 F -0.199 7.199 22 C -0.142 4.142 23 H 0.280 0.720 24 H 0.373 0.627 25 H 0.136 0.864 26 H 0.161 0.839 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.130 0.870 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.435 -1.466 -0.026 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.191 1.191 7 C -0.427 4.427 8 H 0.144 0.856 9 N -0.193 5.193 10 C 0.253 3.747 11 O -0.456 6.456 12 C -0.027 4.027 13 C -0.220 4.220 14 C -0.020 4.020 15 N -0.272 5.272 16 C 0.136 3.864 17 O -0.202 6.202 18 C -0.057 4.057 19 C 0.217 3.783 20 F -0.180 7.180 21 F -0.180 7.180 22 C -0.164 4.164 23 H 0.091 0.909 24 H 0.208 0.792 25 H 0.153 0.847 26 H 0.178 0.822 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.147 0.853 30 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 21.558 -2.352 -0.019 21.686 hybrid contribution -0.218 1.513 0.019 1.528 sum 21.340 -0.840 0.000 21.357 Atomic orbital electron populations 1.69576 1.05885 1.28394 1.45465 1.25178 0.95623 0.98455 0.96886 0.86656 0.80030 0.83423 0.79437 1.18972 1.19520 1.19108 1.19608 0.79075 0.97138 1.46918 0.85556 1.42177 1.07724 1.06389 1.63006 1.17347 0.85083 0.84807 0.87422 1.90668 1.68508 1.30527 1.55903 1.20523 0.95469 0.92395 0.94339 1.22185 0.95497 0.98667 1.05691 1.22175 0.91409 0.94395 0.93982 1.67082 1.41615 0.98278 1.20232 1.19527 0.88605 0.84427 0.93885 1.86301 1.18343 1.27007 1.88577 1.23755 0.80621 0.95539 1.05784 1.22130 0.98802 0.85682 0.71717 1.93027 1.92637 1.81395 1.50945 1.93029 1.92668 1.81348 1.50967 1.21048 0.90223 1.00452 1.04695 0.90908 0.79238 0.84658 0.82188 0.88601 0.88603 0.85265 0.83002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.54 13.95 55.50 0.77 -22.76 16 2 C 0.05 1.17 5.50 -17.45 -0.10 1.07 16 3 Si 0.88 18.00 27.74 -169.99 -4.72 13.28 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 6 H -0.27 -4.89 6.52 56.52 0.37 -4.53 16 7 C -0.30 -8.11 10.16 -15.02 -0.15 -8.26 16 8 H 0.13 3.92 7.38 -52.49 -0.39 3.53 16 9 N -0.56 -13.04 5.04 -11.80 -0.06 -13.10 16 10 C 0.47 10.92 7.74 -12.26 -0.09 10.83 16 11 O -0.57 -15.68 16.01 5.30 0.08 -15.60 16 12 C -0.02 -0.30 5.91 -104.68 -0.62 -0.92 16 13 C -0.20 -3.01 9.61 -39.01 -0.37 -3.39 16 14 C 0.13 1.75 11.16 -17.62 -0.20 1.55 16 15 N -0.55 -7.78 9.18 -13.39 -0.12 -7.91 16 16 C 0.31 4.97 7.49 -17.16 -0.13 4.85 16 17 O -0.29 -4.31 10.00 -18.75 -0.19 -4.50 16 18 C 0.02 0.20 5.53 37.16 0.21 0.40 16 19 C 0.27 2.30 5.63 37.16 0.21 2.51 16 20 F -0.20 -2.26 17.28 2.25 0.04 -2.22 16 21 F -0.20 -2.26 17.28 2.25 0.04 -2.22 16 22 C -0.14 -2.56 9.61 -38.82 -0.37 -2.93 16 23 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.37 7.55 3.89 -40.82 -0.16 7.39 16 25 H 0.14 1.82 6.53 -52.48 -0.34 1.48 16 26 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 27 H 0.10 0.83 8.10 -51.93 -0.42 0.41 16 28 H 0.10 0.83 8.11 -51.93 -0.42 0.41 16 29 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.15 2.85 7.74 -52.49 -0.41 2.44 16 LS Contribution 281.82 15.07 4.25 4.25 Total: -1.00 -32.52 281.82 -3.67 -36.19 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -2.15 Total: 8.88 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -1.62 Total: 5.71 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.59 Total: -43.77 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.10 Total: -20.10 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.08 Total: -4.44 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -4.72 Total: 13.28 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.52 -3.67 -36.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123092843.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.643 kcal (2) G-P(sol) polarization free energy of solvation -32.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds