Wall clock time and date at job start Mon Mar 30 2020 01:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31325 * 1 3 3 Si 1.86801 * 120.00036 * 2 1 4 4 H 1.48493 * 109.46960 * 269.99630 * 3 2 1 5 5 H 1.48498 * 109.47199 * 29.99950 * 3 2 1 6 6 H 1.48505 * 109.46694 * 149.99717 * 3 2 1 7 7 C 1.39108 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99665 * 0.02562 * 7 2 1 9 9 N 1.36792 * 120.00272 * 180.02562 * 7 2 1 10 10 C 1.34770 * 120.00315 * 180.02562 * 9 7 2 11 11 O 1.21570 * 119.99863 * 359.97438 * 10 9 7 12 12 C 1.48000 * 120.00436 * 180.02562 * 10 9 7 13 13 C 1.40061 * 120.89821 * 359.97414 * 12 10 9 14 14 C 1.37928 * 119.12721 * 180.02562 * 13 12 10 15 15 N 1.31936 * 120.98652 * 359.74473 * 14 13 12 16 16 C 1.32206 * 121.98597 * 0.52491 * 15 14 13 17 17 O 1.35682 * 119.61981 * 179.74698 * 16 15 14 18 18 C 1.42906 * 116.99767 * 359.73589 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 F 1.39897 * 109.47129 * 299.99607 * 19 18 17 21 21 F 1.39903 * 109.46814 * 60.00100 * 19 18 17 22 22 C 1.38851 * 120.75809 * 359.48153 * 16 15 14 23 23 H 0.96996 * 119.99867 * 0.02562 * 1 2 3 24 24 H 0.97003 * 119.99862 * 0.02562 * 9 7 2 25 25 H 1.08003 * 120.43664 * 0.02562 * 13 12 10 26 26 H 1.07999 * 119.51016 * 180.02562 * 14 13 12 27 27 H 1.09000 * 109.47490 * 59.99587 * 18 17 16 28 28 H 1.09001 * 109.47232 * 299.98941 * 18 17 16 29 29 H 1.09001 * 109.47002 * 179.97438 * 19 18 17 30 30 H 1.08001 * 120.52825 * 180.27590 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.4948 2.0463 -1.4000 5 1 1.4447 2.6527 0.7000 6 1 3.5448 1.4401 0.7001 7 6 2.0088 -1.2047 0.0005 8 1 1.4688 -2.1400 0.0005 9 7 3.3767 -1.2047 0.0011 10 6 4.0506 -2.3719 0.0011 11 8 3.4428 -3.4247 0.0011 12 6 5.5306 -2.3720 0.0022 13 6 6.2499 -1.1702 0.0028 14 6 7.6285 -1.2128 0.0033 15 7 8.2724 -2.3644 0.0083 16 6 7.6355 -3.5229 0.0028 17 8 8.3461 -4.6788 0.0032 18 6 9.7706 -4.5646 0.0038 19 6 10.3941 -5.9619 0.0048 20 9 9.9815 -6.6559 1.1472 21 9 9.9825 -6.6570 -1.1374 22 6 6.2478 -3.5704 0.0021 23 1 -0.4850 0.8400 -0.0004 24 1 3.8617 -0.3647 0.0014 25 1 5.7319 -0.2225 0.0028 26 1 8.1893 -0.2899 0.0041 27 1 10.0914 -4.0233 0.8938 28 1 10.0921 -4.0236 -0.8862 29 1 11.4807 -5.8748 0.0048 30 1 5.7313 -4.5189 0.0021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123092843.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:53 Heat of formation + Delta-G solvation = -159.773458 kcal Electronic energy + Delta-G solvation = -19838.909195 eV Core-core repulsion = 16076.641551 eV Total energy + Delta-G solvation = -3762.267644 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.91627 -47.97502 -41.85405 -40.35814 -38.81092 -36.29102 -34.16448 -33.43602 -32.34459 -30.49049 -27.75531 -25.38252 -24.38848 -23.79381 -21.71162 -20.96847 -19.47836 -18.62742 -18.51032 -17.98538 -17.50050 -17.21408 -16.93274 -16.67339 -16.32113 -15.77385 -15.71816 -15.00413 -14.89588 -14.79197 -14.65211 -14.36030 -14.26859 -14.25865 -13.36614 -13.06877 -13.00372 -12.50863 -12.32529 -12.04860 -11.99564 -11.67064 -11.15099 -10.98547 -10.61373 -10.41570 -9.65624 -8.55208 -6.13825 -0.36407 0.06814 1.27255 1.35300 1.43080 1.64001 1.91209 2.16152 2.60652 2.72350 2.83148 3.12966 3.20992 3.30270 3.52280 3.73153 3.87898 3.96226 3.96910 4.19308 4.36253 4.42957 4.62177 4.76862 5.07616 5.20196 5.42043 5.79417 6.03406 6.40277 6.65727 6.67935 7.16376 7.71664 8.60719 Molecular weight = 272.08amu Principal moments of inertia in cm(-1) A = 0.040445 B = 0.003756 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.137944 B = 7452.640856 C = 7964.970321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.005 4.005 3 Si 0.959 3.041 4 H -0.249 1.249 5 H -0.267 1.267 6 H -0.225 1.225 7 C -0.337 4.337 8 H 0.061 0.939 9 N -0.552 5.552 10 C 0.468 3.532 11 O -0.624 6.624 12 C -0.036 4.036 13 C -0.189 4.189 14 C 0.157 3.843 15 N -0.530 5.530 16 C 0.319 3.681 17 O -0.316 6.316 18 C 0.010 3.990 19 C 0.265 3.735 20 F -0.219 7.219 21 F -0.219 7.219 22 C -0.165 4.165 23 H 0.287 0.713 24 H 0.393 0.607 25 H 0.161 0.839 26 H 0.218 0.782 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.191 0.809 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.281 1.650 0.018 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.207 4.207 3 Si 0.777 3.223 4 H -0.173 1.173 5 H -0.191 1.191 6 H -0.148 1.148 7 C -0.466 4.466 8 H 0.079 0.921 9 N -0.190 5.190 10 C 0.257 3.743 11 O -0.511 6.511 12 C -0.046 4.046 13 C -0.210 4.210 14 C 0.002 3.998 15 N -0.255 5.255 16 C 0.141 3.859 17 O -0.224 6.224 18 C -0.066 4.066 19 C 0.212 3.788 20 F -0.200 7.200 21 F -0.200 7.200 22 C -0.187 4.187 23 H 0.097 0.903 24 H 0.231 0.769 25 H 0.178 0.822 26 H 0.235 0.765 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.208 0.792 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 26.437 0.740 0.026 26.447 hybrid contribution -1.534 0.365 0.001 1.577 sum 24.903 1.105 0.027 24.927 Atomic orbital electron populations 1.69737 1.08319 1.30149 1.46805 1.26263 0.96560 1.02988 0.94916 0.85459 0.79961 0.76157 0.80715 1.17255 1.19134 1.14758 1.19111 0.80884 0.95648 1.50995 0.92112 1.41832 1.06224 1.07221 1.63754 1.18221 0.87304 0.83970 0.84804 1.90629 1.70554 1.32623 1.57287 1.20119 0.92338 0.94677 0.97512 1.22483 0.96572 0.97749 1.04207 1.23080 0.90653 0.95682 0.90414 1.67293 1.41073 0.98062 1.19025 1.19390 0.87794 0.85457 0.93227 1.86282 1.21149 1.26804 1.88166 1.24217 0.77817 0.97082 1.07442 1.22836 1.01587 0.84201 0.70155 1.92988 1.93108 1.81845 1.52081 1.92989 1.93137 1.81798 1.52101 1.20949 0.91798 0.99462 1.06474 0.90332 0.76924 0.82161 0.76517 0.86860 0.86844 0.79240 0.85496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.64 13.95 21.69 0.30 -52.34 16 2 C -0.01 -0.29 5.50 84.98 0.47 0.18 16 3 Si 0.96 35.65 27.74 68.60 1.90 37.56 16 4 H -0.25 -8.63 7.11 99.48 0.71 -7.93 16 5 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 6 H -0.22 -6.78 6.52 99.48 0.65 -6.13 16 7 C -0.34 -19.48 10.16 84.13 0.85 -18.62 16 8 H 0.06 4.19 7.38 -2.91 -0.02 4.17 16 9 N -0.55 -26.26 5.04 -309.51 -1.56 -27.82 16 10 C 0.47 22.82 7.74 86.83 0.67 23.49 16 11 O -0.62 -36.94 16.01 -3.93 -0.06 -37.00 16 12 C -0.04 -1.32 5.91 -19.90 -0.12 -1.43 16 13 C -0.19 -4.92 9.61 22.64 0.22 -4.70 16 14 C 0.16 3.11 11.16 84.60 0.94 4.06 16 15 N -0.53 -12.62 9.18 -309.16 -2.84 -15.46 16 16 C 0.32 9.50 7.49 84.78 0.63 10.14 16 17 O -0.32 -8.80 10.00 -90.00 -0.90 -9.70 16 18 C 0.01 0.17 5.53 71.98 0.40 0.56 16 19 C 0.26 3.75 5.63 71.98 0.41 4.16 16 20 F -0.22 -4.63 17.28 44.97 0.78 -3.86 16 21 F -0.22 -4.63 17.28 44.97 0.78 -3.85 16 22 C -0.16 -5.99 9.61 22.76 0.22 -5.77 16 23 H 0.29 14.91 8.31 -92.71 -0.77 14.14 16 24 H 0.39 15.02 3.89 -92.71 -0.36 14.66 16 25 H 0.16 3.37 6.53 -2.91 -0.02 3.35 16 26 H 0.22 1.99 8.06 -2.91 -0.02 1.96 16 27 H 0.11 1.49 8.10 -2.39 -0.02 1.47 16 28 H 0.11 1.49 8.11 -2.39 -0.02 1.47 16 29 H 0.19 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.13 5.15 7.74 -2.91 -0.02 5.13 16 Total: -1.00 -80.65 281.82 3.88 -76.77 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.79 Total: 23.65 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 4.70 Total: 12.05 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -4.10 Total: -95.62 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -0.96 Total: -46.70 kcal Atomic # 9 Polarization: -9.26 SS G_CDS: 1.55 Total: -7.71 kcal Atomic # 14 Polarization: 35.65 SS G_CDS: 1.90 Total: 37.56 kcal Total: -80.65 3.88 -76.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123092843.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.002 kcal (2) G-P(sol) polarization free energy of solvation -80.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds