Wall clock time and date at job start Mon Mar 30 2020 01:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00179 * 2 1 4 4 H 1.48498 * 109.47428 * 270.00024 * 3 2 1 5 5 H 1.48501 * 109.47118 * 30.00077 * 3 2 1 6 6 H 1.48497 * 109.47312 * 149.99869 * 3 2 1 7 7 C 1.37881 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99680 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00112 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47033 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47096 * 180.02562 * 10 9 7 12 12 S 1.81401 * 109.47495 * 179.97438 * 11 10 9 13 13 C 1.81393 * 103.00362 * 179.97438 * 12 11 10 14 14 C 1.50690 * 109.47169 * 180.02562 * 13 12 11 15 15 C 1.38255 * 119.96710 * 270.02204 * 14 13 12 16 16 C 1.38211 * 120.07403 * 179.97438 * 15 14 13 17 17 C 1.38410 * 119.99989 * 359.97438 * 16 15 14 18 18 F 1.35103 * 120.03945 * 180.27720 * 17 16 15 19 19 C 1.38655 * 119.92833 * 0.02562 * 17 16 15 20 20 F 1.35100 * 120.03206 * 180.02562 * 19 17 16 21 21 C 1.38215 * 119.96717 * 90.00389 * 14 13 12 22 22 H 0.96999 * 119.99655 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47448 * 59.99541 * 9 7 2 24 24 H 1.09008 * 109.46900 * 300.00079 * 9 7 2 25 25 H 1.08990 * 109.47404 * 59.99583 * 10 9 7 26 26 H 1.09004 * 109.46514 * 299.99019 * 10 9 7 27 27 H 1.09001 * 109.47419 * 59.99088 * 11 10 9 28 28 H 1.09000 * 109.47141 * 299.99696 * 11 10 9 29 29 H 1.08996 * 109.47088 * 59.99605 * 13 12 11 30 30 H 1.09001 * 109.47039 * 300.00155 * 13 12 11 31 31 H 1.08000 * 119.96236 * 359.97438 * 15 14 13 32 32 H 1.08000 * 120.00028 * 180.02562 * 16 15 14 33 33 H 1.08003 * 119.99620 * 0.03958 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6367 0.0022 12 16 6.1562 -4.3469 0.0028 13 6 7.9586 -4.1425 0.0035 14 6 8.6178 -5.4976 0.0034 15 6 8.9191 -6.1190 1.2011 16 6 9.5232 -7.3621 1.2036 17 6 9.8268 -7.9864 0.0062 18 9 10.4123 -9.2040 0.0077 19 6 9.5247 -7.3632 -1.1950 20 9 9.8196 -7.9709 -2.3650 21 6 8.9203 -6.1181 -1.1940 22 1 -0.4849 0.8401 0.0004 23 1 3.8746 -0.6800 0.8911 24 1 3.8752 -0.6804 -0.8889 25 1 3.6585 -3.1503 -0.8891 26 1 3.6579 -3.1505 0.8909 27 1 5.9142 -2.1230 0.8926 28 1 5.9156 -2.1226 -0.8873 29 1 8.2614 -3.5908 0.8934 30 1 8.2621 -3.5912 -0.8865 31 1 8.6821 -5.6326 2.1358 32 1 9.7577 -7.8467 2.1399 33 1 8.6848 -5.6314 -2.1289 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161128850.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:40 Heat of formation + Delta-G solvation = -103.066808 kcal Electronic energy + Delta-G solvation = -16991.657817 eV Core-core repulsion = 13778.142372 eV Total energy + Delta-G solvation = -3213.515445 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.55033 -49.63533 -40.13101 -36.37155 -34.14175 -33.60798 -31.84816 -29.91175 -28.01880 -25.05569 -24.30179 -22.94735 -21.88548 -19.07405 -18.91113 -18.24349 -18.04269 -17.42546 -17.04044 -16.35139 -16.25273 -16.06146 -15.66108 -15.53544 -15.16755 -15.03631 -14.65304 -14.51343 -13.97985 -13.80563 -13.28690 -13.15828 -13.00982 -12.82020 -12.63729 -12.32032 -11.81464 -11.57381 -11.52282 -11.34544 -10.89608 -10.75947 -10.10814 -9.65716 -8.64161 -8.28559 -6.33911 -0.36859 -0.04449 0.84900 1.38263 1.40576 1.52341 1.66880 2.37743 2.41799 2.72774 3.06915 3.23051 3.41497 3.56962 3.93890 4.06248 4.07624 4.08790 4.22880 4.54755 4.59161 4.71986 4.79090 4.79730 4.85554 4.88597 4.99574 5.02125 5.28060 5.47105 5.54978 5.65721 5.67728 6.28209 6.74583 7.30759 8.88627 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.048798 B = 0.002708 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.654357 B =10338.754668 C =10385.413574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.239 1.239 7 C -0.537 4.537 8 H 0.026 0.974 9 C -0.004 4.004 10 C -0.081 4.081 11 C -0.070 4.070 12 S -0.295 6.295 13 C -0.039 4.039 14 C -0.054 4.054 15 C -0.075 4.075 16 C -0.117 4.117 17 C 0.052 3.948 18 F -0.139 7.139 19 C 0.047 3.953 20 F -0.141 7.141 21 C -0.110 4.110 22 H 0.266 0.734 23 H 0.028 0.972 24 H 0.025 0.975 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.108 0.892 31 H 0.169 0.831 32 H 0.174 0.826 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.510 -10.678 2.132 27.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.162 1.162 7 C -0.575 4.575 8 H 0.045 0.955 9 C -0.044 4.044 10 C -0.120 4.120 11 C -0.218 4.218 12 S -0.065 6.065 13 C -0.186 4.186 14 C -0.056 4.056 15 C -0.095 4.095 16 C -0.135 4.135 17 C 0.031 3.969 18 F -0.118 7.118 19 C 0.027 3.973 20 F -0.120 7.120 21 C -0.131 4.131 22 H 0.075 0.925 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.137 0.863 30 H 0.126 0.874 31 H 0.186 0.814 32 H 0.191 0.809 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 24.793 -11.557 2.084 27.434 hybrid contribution 0.299 1.144 -0.534 1.298 sum 25.092 -10.413 1.550 27.211 Atomic orbital electron populations 1.70086 1.08556 1.28262 1.52608 1.26118 0.95672 1.03897 0.93982 0.85565 0.79640 0.77593 0.79268 1.19117 1.21220 1.16199 1.21515 0.92375 0.93018 1.50625 0.95510 1.19505 0.93611 0.94118 0.97124 1.21043 0.91921 0.97839 1.01157 1.23408 0.98645 0.93806 1.05902 1.87404 1.06156 1.14720 1.98256 1.22327 0.91526 0.96519 1.08244 1.19246 0.97806 0.95734 0.92780 1.21355 0.95380 0.93658 0.99085 1.21368 0.99334 0.95939 0.96905 1.18036 1.01683 0.82863 0.94279 1.91505 1.81894 1.41063 1.97354 1.17853 1.04867 0.94265 0.80325 1.91500 1.91620 1.82999 1.45869 1.21117 0.98415 0.92696 1.00845 0.92488 0.95393 0.95705 0.93307 0.93079 0.88765 0.89064 0.86312 0.87352 0.81370 0.80875 0.82591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16 2 C 0.00 -0.02 5.47 84.66 0.46 0.45 16 3 Si 0.96 43.04 27.47 68.60 1.88 44.92 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 7 C -0.54 -30.93 9.66 25.60 0.25 -30.68 16 8 H 0.03 1.72 7.99 -2.91 -0.02 1.69 16 9 C 0.00 -0.20 4.04 29.85 0.12 -0.08 16 10 C -0.08 -3.04 5.16 30.60 0.16 -2.88 16 11 C -0.07 -1.88 5.94 71.98 0.43 -1.45 16 12 S -0.30 -7.22 21.72 -56.49 -1.23 -8.45 16 13 C -0.04 -0.58 6.07 71.23 0.43 -0.14 16 14 C -0.05 -0.81 5.14 -19.87 -0.10 -0.91 16 15 C -0.08 -0.91 9.70 22.27 0.22 -0.70 16 16 C -0.12 -1.51 10.02 22.30 0.22 -1.28 16 17 C 0.05 0.97 7.31 22.41 0.16 1.13 16 18 F -0.14 -2.93 17.18 44.97 0.77 -2.15 16 19 C 0.05 0.93 7.31 22.41 0.16 1.10 16 20 F -0.14 -3.25 17.18 44.97 0.77 -2.48 16 21 C -0.11 -1.86 9.68 22.30 0.22 -1.65 16 22 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 23 H 0.03 1.19 7.20 -2.39 -0.02 1.17 16 24 H 0.02 1.05 7.57 -2.38 -0.02 1.03 16 25 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.12 1.27 8.09 -2.39 -0.02 1.25 16 30 H 0.11 1.34 8.08 -2.39 -0.02 1.32 16 31 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 32 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 33 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -68.77 307.73 6.28 -62.49 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: 1.05 Total: 2.61 kcal Atomic # 6 Polarization: -39.83 SS G_CDS: 2.73 Total: -37.10 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: 0.30 Total: -59.84 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 1.55 Total: -4.63 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.88 Total: 44.92 kcal Atomic # 16 Polarization: -7.22 SS G_CDS: -1.23 Total: -8.45 kcal Total: -68.77 6.28 -62.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161128850.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.578 kcal (2) G-P(sol) polarization free energy of solvation -68.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds