Wall clock time and date at job start Mon Mar 30 2020 01:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99792 * 2 1 4 4 H 1.48499 * 109.47085 * 269.99572 * 3 2 1 5 5 H 1.48497 * 109.47475 * 29.99910 * 3 2 1 6 6 H 1.48506 * 109.46806 * 150.00141 * 3 2 1 7 7 C 1.37869 * 119.99576 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00559 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99917 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47229 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47005 * 179.97438 * 10 9 7 12 12 S 1.81402 * 109.47218 * 180.02562 * 11 10 9 13 13 C 1.81403 * 103.00234 * 180.02562 * 12 11 10 14 14 C 1.50695 * 109.47128 * 179.97438 * 13 12 11 15 15 C 1.38257 * 119.99723 * 270.24834 * 14 13 12 16 16 C 1.38213 * 120.06756 * 180.25475 * 15 14 13 17 17 C 1.38253 * 120.07443 * 359.75015 * 16 15 14 18 18 C 1.38368 * 120.00006 * 359.97438 * 17 16 15 19 19 F 1.35102 * 120.04054 * 179.97438 * 18 17 16 20 20 C 1.38372 * 120.00361 * 89.99906 * 14 13 12 21 21 F 1.35104 * 120.03221 * 0.02562 * 20 14 13 22 22 H 0.97005 * 119.99286 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47123 * 59.99278 * 9 7 2 24 24 H 1.09009 * 109.46887 * 300.00063 * 9 7 2 25 25 H 1.08996 * 109.47697 * 60.00081 * 10 9 7 26 26 H 1.09004 * 109.47262 * 299.99365 * 10 9 7 27 27 H 1.09000 * 109.47525 * 60.00066 * 11 10 9 28 28 H 1.08997 * 109.47113 * 299.99315 * 11 10 9 29 29 H 1.08989 * 109.46885 * 59.99474 * 13 12 11 30 30 H 1.09004 * 109.46310 * 299.99801 * 13 12 11 31 31 H 1.07999 * 119.96593 * 359.97438 * 15 14 13 32 32 H 1.08003 * 119.96798 * 179.76678 * 16 15 14 33 33 H 1.08001 * 120.00866 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0009 12 16 6.1561 -4.3469 0.0000 13 6 7.9586 -4.1425 0.0009 14 6 8.6178 -5.4976 0.0008 15 6 8.9150 -6.1218 1.1982 16 6 9.5243 -7.3623 1.1999 17 6 9.8333 -7.9841 0.0044 18 6 9.5321 -7.3647 -1.1957 19 9 9.8341 -7.9713 -2.3645 20 6 8.9210 -6.1196 -1.1975 21 9 8.6268 -5.5123 -2.3679 22 1 -0.4849 0.8401 -0.0004 23 1 3.8746 -0.6800 0.8911 24 1 3.8752 -0.6805 -0.8889 25 1 3.6585 -3.1503 -0.8892 26 1 3.6578 -3.1506 0.8908 27 1 5.9149 -2.1229 0.8909 28 1 5.9148 -2.1228 -0.8891 29 1 8.2613 -3.5916 0.8912 30 1 8.2620 -3.5904 -0.8887 31 1 8.6748 -5.6374 2.1331 32 1 9.7592 -7.8468 2.1362 33 1 10.3091 -8.9537 0.0069 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161157276.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:14 Heat of formation + Delta-G solvation = -85.399316 kcal Electronic energy + Delta-G solvation = -17264.833725 eV Core-core repulsion = 14052.084400 eV Total energy + Delta-G solvation = -3212.749325 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.074 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.70985 -48.78471 -39.36781 -34.61975 -33.22451 -32.10185 -30.66833 -28.22313 -27.54626 -23.37758 -23.17581 -22.31467 -20.20128 -18.21271 -17.59771 -17.26860 -16.79466 -16.66108 -15.87815 -15.22712 -15.18402 -14.90430 -14.71873 -14.44532 -14.13289 -13.77882 -13.59380 -12.95986 -12.69523 -12.34324 -12.31181 -12.15021 -11.99353 -11.57034 -11.26755 -10.88876 -10.23977 -9.94544 -9.77839 -9.60371 -9.24147 -9.14374 -9.07139 -8.56466 -7.58138 -6.06391 -4.05054 0.41935 0.58238 1.80607 2.67092 3.08301 3.28601 3.36008 3.38359 3.41536 3.99884 4.08621 4.28389 4.42517 4.52508 4.67700 4.87970 5.14142 5.26337 5.34987 5.37720 5.43307 5.45331 5.58053 5.71036 5.85003 5.94093 6.36434 6.37433 6.46900 6.78511 7.22028 7.34331 7.74700 8.51085 8.98568 9.55259 11.07064 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.041841 B = 0.003031 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.040552 B = 9237.006981 C = 9385.341439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.087 4.087 11 C -0.079 4.079 12 S -0.255 6.255 13 C -0.057 4.057 14 C -0.073 4.073 15 C -0.084 4.084 16 C -0.100 4.100 17 C -0.126 4.126 18 C 0.066 3.934 19 F -0.129 7.129 20 C 0.083 3.917 21 F -0.120 7.120 22 H 0.263 0.737 23 H 0.017 0.983 24 H 0.013 0.987 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.593 -13.770 2.390 27.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.046 4.046 10 C -0.126 4.126 11 C -0.227 4.227 12 S -0.024 6.024 13 C -0.204 4.204 14 C -0.076 4.076 15 C -0.104 4.104 16 C -0.118 4.118 17 C -0.145 4.145 18 C 0.046 3.954 19 F -0.107 7.107 20 C 0.061 3.939 21 F -0.099 7.099 22 H 0.073 0.927 23 H 0.035 0.965 24 H 0.031 0.969 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 22.831 -14.557 2.290 27.174 hybrid contribution 1.024 2.045 -0.531 2.348 sum 23.856 -12.512 1.759 26.995 Atomic orbital electron populations 1.69920 1.06298 1.26919 1.50992 1.25030 0.94747 0.99166 0.94540 0.86767 0.80302 0.83617 0.78519 1.20262 1.21329 1.19065 1.21106 0.89265 0.94616 1.50967 0.90891 1.19573 0.97329 0.91319 0.96398 1.21282 0.88257 1.00593 1.02505 1.23693 1.02227 0.92358 1.04467 1.87193 1.01283 1.15878 1.98084 1.22189 0.95981 0.95721 1.06522 1.19261 0.99983 0.96579 0.91733 1.21075 0.96997 0.94970 0.97352 1.21074 0.97942 0.94849 0.97943 1.21126 1.01710 1.01335 0.90354 1.17648 1.03226 0.91762 0.82796 1.91538 1.91117 1.82421 1.45631 1.17508 1.02319 0.91741 0.82331 1.91553 1.91093 1.82311 1.44911 0.92680 0.96459 0.96898 0.91732 0.91701 0.90347 0.90388 0.88266 0.88756 0.83850 0.83938 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.16 4.04 -27.88 -0.11 -0.28 16 10 C -0.09 -1.73 5.16 -26.73 -0.14 -1.87 16 11 C -0.08 -1.26 5.94 37.16 0.22 -1.04 16 12 S -0.25 -3.74 21.72 -107.50 -2.33 -6.08 16 13 C -0.06 -0.63 5.89 36.00 0.21 -0.41 16 14 C -0.07 -0.76 5.14 -104.57 -0.54 -1.30 16 15 C -0.08 -0.66 9.70 -39.58 -0.38 -1.05 16 16 C -0.10 -0.64 10.04 -39.58 -0.40 -1.04 16 17 C -0.13 -0.93 10.02 -39.53 -0.40 -1.33 16 18 C 0.07 0.68 7.31 -39.37 -0.29 0.40 16 19 F -0.13 -1.47 17.18 2.25 0.04 -1.44 16 20 C 0.08 0.97 7.25 -39.36 -0.29 0.68 16 21 F -0.12 -1.63 16.39 2.25 0.04 -1.59 16 22 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 23 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 24 H 0.01 0.30 7.57 -51.92 -0.39 -0.10 16 25 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.08 1.15 8.14 -51.92 -0.42 0.72 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.10 0.89 8.09 -51.93 -0.42 0.47 16 30 H 0.09 1.04 7.64 -51.92 -0.40 0.64 16 31 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 33 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 LS Contribution 306.64 15.07 4.62 4.62 Total: -1.00 -31.64 306.64 -8.20 -39.84 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: -4.13 Total: -4.46 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -2.54 Total: -20.64 kcal Atomic # 7 Polarization: -27.95 SS G_CDS: 0.77 Total: -27.18 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.08 Total: -3.03 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -2.33 Total: -6.08 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.64 -8.20 -39.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161157276.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.561 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds