Wall clock time and date at job start Mon Mar 30 2020 01:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00048 * 2 1 4 4 H 1.48506 * 109.46777 * 269.99788 * 3 2 1 5 5 H 1.48493 * 109.47461 * 29.99440 * 3 2 1 6 6 H 1.48500 * 109.47380 * 150.00129 * 3 2 1 7 7 C 1.37875 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00115 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00007 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47202 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.47309 * 180.02562 * 11 10 9 13 13 C 1.81395 * 103.00186 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47179 * 179.97438 * 13 12 11 15 15 C 1.38425 * 120.02136 * 90.00100 * 14 13 12 16 16 F 1.35101 * 120.01402 * 359.70506 * 15 14 13 17 17 C 1.38476 * 119.97328 * 179.97438 * 15 14 13 18 18 C 1.38207 * 120.02410 * 0.02562 * 17 15 14 19 19 C 1.38207 * 120.05360 * 359.97438 * 18 17 15 20 20 C 1.38412 * 120.02814 * 269.97733 * 14 13 12 21 21 F 1.35096 * 120.01191 * 0.02562 * 20 14 13 22 22 H 0.96996 * 120.00135 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47042 * 60.00276 * 9 7 2 24 24 H 1.08991 * 109.47312 * 299.99863 * 9 7 2 25 25 H 1.09002 * 109.46553 * 60.00394 * 10 9 7 26 26 H 1.08996 * 109.47183 * 300.00817 * 10 9 7 27 27 H 1.09002 * 109.47088 * 60.00668 * 11 10 9 28 28 H 1.09008 * 109.47358 * 300.00228 * 11 10 9 29 29 H 1.09008 * 109.47052 * 60.00147 * 13 12 11 30 30 H 1.09006 * 109.47461 * 300.00013 * 13 12 11 31 31 H 1.08001 * 119.98752 * 179.97438 * 17 15 14 32 32 H 1.08000 * 119.97200 * 180.02562 * 18 17 15 33 33 H 1.07995 * 119.99247 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4803 -4.9871 -0.0001 12 16 2.6590 -6.3660 0.0007 13 6 1.5808 -7.8246 -0.0010 14 6 2.4247 -9.0732 -0.0012 15 6 2.8117 -9.6477 1.1973 16 9 2.4379 -9.0860 2.3678 17 6 3.5867 -10.7953 1.1959 18 6 3.9743 -11.3666 -0.0014 19 6 3.5885 -10.7939 -1.1985 20 6 2.8130 -9.6465 -1.1996 21 9 2.4361 -9.0868 -2.3700 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8718 -3.6044 0.8906 26 1 2.8720 -3.6044 -0.8893 27 1 0.8540 -5.0446 -0.8904 28 1 0.8532 -5.0451 0.8897 29 1 0.9525 -7.8111 -0.8917 30 1 0.9506 -7.8117 0.8883 31 1 3.8891 -11.2435 2.1308 32 1 4.5784 -12.2618 -0.0014 33 1 3.8923 -11.2409 -2.1335 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182861239.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:12 Heat of formation + Delta-G solvation = -104.541388 kcal Electronic energy + Delta-G solvation = -17366.892357 eV Core-core repulsion = 14153.312970 eV Total energy + Delta-G solvation = -3213.579387 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.074 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.06602 -50.05746 -39.85087 -36.40794 -34.10641 -34.07332 -31.29865 -29.52582 -28.33983 -25.40316 -23.90076 -23.14708 -22.04374 -19.19272 -18.59855 -18.41966 -17.52297 -17.15468 -16.67196 -16.63417 -16.45718 -16.34304 -16.28543 -15.50281 -15.10937 -14.72251 -14.47523 -14.45766 -13.76380 -13.68887 -13.53740 -12.98719 -12.81371 -12.79726 -12.71729 -12.50548 -12.31314 -11.70565 -11.56033 -11.27942 -11.00880 -10.58651 -9.88813 -9.77702 -8.78506 -8.23297 -6.34738 -0.32580 -0.04850 0.77962 1.39190 1.40667 1.50434 1.52339 2.39505 2.40948 2.84130 3.09991 3.25344 3.35569 3.51992 3.85749 3.96688 4.03246 4.18492 4.19221 4.30703 4.52227 4.75971 4.76572 4.80338 4.90925 4.99512 5.04336 5.08410 5.18387 5.45303 5.63807 5.74266 5.78869 6.19343 6.80513 7.34542 8.88640 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.038664 B = 0.003115 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.009204 B = 8987.272752 C = 9261.590576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.080 4.080 11 C -0.067 4.067 12 S -0.283 6.283 13 C -0.041 4.041 14 C -0.164 4.164 15 C 0.123 3.877 16 F -0.137 7.137 17 C -0.158 4.158 18 C -0.042 4.042 19 C -0.158 4.158 20 C 0.123 3.877 21 F -0.137 7.137 22 H 0.265 0.735 23 H -0.003 1.003 24 H -0.003 1.003 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.170 0.830 32 H 0.189 0.811 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.187 -27.404 -0.010 28.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.119 4.119 11 C -0.215 4.215 12 S -0.053 6.053 13 C -0.188 4.188 14 C -0.167 4.167 15 C 0.102 3.898 16 F -0.116 7.116 17 C -0.177 4.177 18 C -0.061 4.061 19 C -0.177 4.177 20 C 0.102 3.898 21 F -0.116 7.116 22 H 0.074 0.926 23 H 0.015 0.985 24 H 0.015 0.985 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.188 0.812 32 H 0.206 0.794 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.090 -27.172 -0.005 28.351 hybrid contribution -1.633 1.536 -0.011 2.242 sum 6.457 -25.636 -0.016 26.437 Atomic orbital electron populations 1.70088 1.07762 1.27926 1.51463 1.25983 0.95822 1.03387 0.94540 0.85418 0.78640 0.78250 0.78587 1.19650 1.20497 1.18823 1.21657 0.93560 0.92286 1.50935 0.92290 1.18975 0.94117 0.92312 0.95317 1.21173 0.98071 0.91375 1.01283 1.23395 0.98794 0.94462 1.04878 1.87006 1.18757 1.01339 1.98165 1.22023 0.98487 0.91443 1.06827 1.19334 1.05949 0.98448 0.92967 1.17535 0.98268 0.94269 0.79758 1.91516 1.89620 1.84863 1.45581 1.21610 0.99107 0.94606 1.02359 1.21404 0.95998 0.99645 0.89033 1.21610 0.99140 0.94573 1.02360 1.17532 0.98244 0.94290 0.79758 1.91515 1.89520 1.84952 1.45593 0.92626 0.98473 0.98452 0.92618 0.92604 0.90049 0.90056 0.88256 0.88249 0.81244 0.79406 0.81245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.55 -32.01 9.11 25.60 0.23 -31.78 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.72 4.97 29.85 0.15 1.86 16 10 C -0.08 -3.53 5.16 30.59 0.16 -3.38 16 11 C -0.07 -2.48 5.94 71.98 0.43 -2.05 16 12 S -0.28 -9.44 21.72 -56.49 -1.23 -10.67 16 13 C -0.04 -1.09 5.71 71.24 0.41 -0.68 16 14 C -0.16 -3.82 5.15 -19.78 -0.10 -3.92 16 15 C 0.12 2.55 7.24 22.37 0.16 2.71 16 16 F -0.14 -3.34 16.48 44.97 0.74 -2.60 16 17 C -0.16 -2.01 10.03 22.32 0.22 -1.78 16 18 C -0.04 -0.36 10.04 22.25 0.22 -0.14 16 19 C -0.16 -2.01 10.03 22.32 0.22 -1.78 16 20 C 0.12 2.55 7.24 22.37 0.16 2.71 16 21 F -0.14 -3.34 16.48 44.97 0.74 -2.60 16 22 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 23 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 24 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 28 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 29 H 0.10 2.54 7.64 -2.39 -0.02 2.52 16 30 H 0.10 2.54 7.65 -2.39 -0.02 2.52 16 31 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 32 H 0.19 0.01 8.06 -2.91 -0.02 -0.01 16 33 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -69.07 309.26 6.40 -62.67 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: 1.10 Total: 1.01 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 2.73 Total: -37.74 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.28 Total: -57.16 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 1.48 Total: -5.20 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: -9.44 SS G_CDS: -1.23 Total: -10.67 kcal Total: -69.07 6.40 -62.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182861239.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.871 kcal (2) G-P(sol) polarization free energy of solvation -69.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds