Wall clock time and date at job start Mon Mar 30 2020 01:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86805 * 119.99940 * 2 1 4 4 H 1.48507 * 109.46942 * 269.99872 * 3 2 1 5 5 H 1.48495 * 109.47322 * 29.99707 * 3 2 1 6 6 H 1.48501 * 109.47290 * 150.00117 * 3 2 1 7 7 C 1.40140 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00013 * 179.97438 * 7 2 1 9 9 C 1.41810 * 119.99954 * 359.97438 * 7 2 1 10 10 O 1.21768 * 120.00054 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00033 * 179.97438 * 9 7 2 12 12 C 1.39579 * 120.00007 * 183.98134 * 11 9 7 13 13 C 1.39175 * 120.52458 * 325.78884 * 12 11 9 14 14 C 1.38633 * 118.40842 * 179.97438 * 13 12 11 15 15 C 1.38194 * 119.37722 * 359.97438 * 14 13 12 16 16 N 1.31987 * 121.02102 * 0.02737 * 15 14 13 17 17 C 1.32150 * 121.73098 * 359.67480 * 16 15 14 18 18 O 1.35696 * 119.74362 * 180.29174 * 17 16 15 19 19 C 1.42906 * 117.00117 * 0.29574 * 18 17 16 20 20 C 1.53002 * 109.46872 * 179.97438 * 19 18 17 21 21 F 1.39892 * 109.46984 * 299.99847 * 20 19 18 22 22 F 1.39901 * 109.46941 * 60.00260 * 20 19 18 23 23 H 0.96998 * 120.00076 * 0.02562 * 1 2 3 24 24 H 0.97001 * 120.00209 * 4.26690 * 11 9 7 25 25 H 1.07997 * 120.79873 * 359.95206 * 13 12 11 26 26 H 1.07998 * 120.30940 * 180.02562 * 14 13 12 27 27 H 1.07997 * 119.48643 * 179.97438 * 15 14 13 28 28 H 1.08996 * 109.46585 * 299.99817 * 19 18 17 29 29 H 1.09000 * 109.46789 * 59.99442 * 19 18 17 30 30 H 1.08999 * 109.46291 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4878 2.0464 -1.4001 5 1 1.4377 2.6527 0.6999 6 1 3.5378 1.4403 0.7000 7 6 2.0070 -1.2136 0.0005 8 1 3.0869 -1.2136 0.0001 9 6 1.2980 -2.4418 0.0016 10 8 0.0803 -2.4418 0.0016 11 7 1.9719 -3.6089 0.0016 12 6 1.2764 -4.8163 -0.0812 13 6 0.0267 -4.9546 0.5153 14 6 -0.6255 -6.1730 0.4054 15 6 -0.0215 -7.2051 -0.2873 16 7 1.1648 -7.0480 -0.8441 17 6 1.8211 -5.9033 -0.7703 18 8 3.0361 -5.7845 -1.3628 19 6 3.5373 -6.9322 -2.0511 20 6 4.9077 -6.6095 -2.6501 21 9 4.7848 -5.5439 -3.5481 22 9 5.7929 -6.2566 -1.6258 23 1 -0.4850 0.8400 -0.0004 24 1 2.9399 -3.6100 0.0634 25 1 -0.4242 -4.1326 1.0514 26 1 -1.5967 -6.3140 0.8561 27 1 -0.5278 -8.1551 -0.3737 28 1 3.6325 -7.7625 -1.3514 29 1 2.8477 -7.2070 -2.8493 30 1 5.2900 -7.4851 -3.1747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185869862.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:24 Heat of formation + Delta-G solvation = -165.424954 kcal Electronic energy + Delta-G solvation = -20547.426950 eV Core-core repulsion = 16784.914239 eV Total energy + Delta-G solvation = -3762.512711 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.90262 -47.96157 -41.76575 -39.71608 -38.74418 -35.67426 -34.54297 -32.73596 -31.68341 -30.20811 -28.42514 -25.25623 -24.18207 -23.42618 -21.90417 -19.92074 -19.58028 -18.48637 -18.26795 -17.92248 -17.75664 -17.47380 -16.89619 -16.65010 -15.89497 -15.76277 -15.05900 -14.83265 -14.72537 -14.46908 -14.33864 -14.23256 -14.07008 -13.39936 -13.28603 -13.04167 -12.81594 -12.74539 -12.24321 -12.04321 -11.98819 -11.56717 -10.98850 -10.83391 -10.23234 -9.79100 -8.74105 -8.42030 -7.05579 0.23911 0.34300 1.37699 1.37962 1.54654 1.79439 2.18849 2.32737 2.77992 2.85066 2.89837 3.29690 3.45777 3.52864 3.57407 3.89361 4.11068 4.21508 4.35279 4.41308 4.44238 4.58996 5.08253 5.19165 5.29635 5.53265 5.83389 5.96968 6.05818 6.35746 6.70148 6.84620 7.29122 8.32001 8.51291 Molecular weight = 272.08amu Principal moments of inertia in cm(-1) A = 0.015812 B = 0.006197 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.351563 B = 4517.139571 C = 6036.779269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.034 3.966 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.250 1.250 7 C -0.565 4.565 8 H 0.085 0.915 9 C 0.532 3.468 10 O -0.611 6.611 11 N -0.686 5.686 12 C 0.094 3.906 13 C -0.085 4.085 14 C -0.175 4.175 15 C 0.100 3.900 16 N -0.520 5.520 17 C 0.264 3.736 18 O -0.318 6.318 19 C 0.013 3.987 20 C 0.266 3.734 21 F -0.220 7.220 22 F -0.216 7.216 23 H 0.281 0.719 24 H 0.403 0.597 25 H 0.125 0.875 26 H 0.166 0.834 27 H 0.204 0.796 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.623 -14.808 -3.029 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.184 4.184 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.173 1.173 7 C -0.600 4.600 8 H 0.103 0.897 9 C 0.341 3.659 10 O -0.499 6.499 11 N -0.330 5.330 12 C -0.006 4.006 13 C -0.114 4.114 14 C -0.195 4.195 15 C -0.056 4.056 16 N -0.244 5.244 17 C 0.083 3.917 18 O -0.226 6.226 19 C -0.063 4.063 20 C 0.214 3.786 21 F -0.202 7.202 22 F -0.198 7.198 23 H 0.091 0.909 24 H 0.237 0.763 25 H 0.143 0.857 26 H 0.183 0.817 27 H 0.221 0.779 28 H 0.129 0.871 29 H 0.121 0.879 30 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 6.221 -15.063 -3.500 16.668 hybrid contribution 0.227 1.569 0.483 1.658 sum 6.448 -13.494 -3.017 15.256 Atomic orbital electron populations 1.70132 1.09534 1.29627 1.33277 1.26985 0.95558 1.04963 0.90902 0.84980 0.78850 0.74692 0.79603 1.18578 1.19029 1.17312 1.20565 0.95403 0.90717 1.53345 0.89668 1.17394 0.87331 0.83469 0.77663 1.90566 1.15088 1.86960 1.57258 1.43550 1.09869 1.03425 1.76205 1.18271 0.95864 0.86874 0.99610 1.21730 0.93715 0.98599 0.97360 1.22234 1.02642 0.92164 1.02494 1.22907 0.89201 1.00256 0.93252 1.67240 1.11671 1.21456 1.24021 1.19569 0.87428 0.90802 0.93910 1.86228 1.30298 1.39243 1.66868 1.24101 0.94457 0.88793 0.98964 1.22812 0.87355 0.88957 0.79519 1.92990 1.96500 1.61892 1.68777 1.92981 1.70936 1.93887 1.61991 0.90893 0.76280 0.85741 0.81667 0.77923 0.87072 0.87890 0.79216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.57 11.73 21.85 0.26 -47.32 16 2 C 0.03 1.90 5.50 85.33 0.47 2.37 16 3 Si 1.00 40.50 29.56 68.60 2.03 42.52 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 6 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 7 C -0.57 -32.45 9.31 23.62 0.22 -32.23 16 8 H 0.09 4.46 7.85 -2.91 -0.02 4.44 16 9 C 0.53 31.50 7.43 85.13 0.63 32.14 16 10 O -0.61 -40.01 12.32 -4.57 -0.06 -40.07 16 11 N -0.69 -34.26 5.17 -310.70 -1.61 -35.87 16 12 C 0.09 4.26 6.35 38.50 0.24 4.50 16 13 C -0.09 -3.68 8.80 22.59 0.20 -3.48 16 14 C -0.18 -5.48 10.10 22.35 0.23 -5.25 16 15 C 0.10 2.70 11.17 84.66 0.95 3.65 16 16 N -0.52 -16.56 9.21 -308.24 -2.84 -19.40 16 17 C 0.26 10.15 7.52 85.01 0.64 10.79 16 18 O -0.32 -11.36 9.59 -90.15 -0.86 -12.23 16 19 C 0.01 0.30 5.54 71.98 0.40 0.70 16 20 C 0.27 5.31 5.63 71.98 0.41 5.71 16 21 F -0.22 -6.14 17.28 44.97 0.78 -5.36 16 22 F -0.22 -5.59 17.28 44.97 0.78 -4.81 16 23 H 0.28 15.00 8.29 -92.71 -0.77 14.23 16 24 H 0.40 18.40 8.54 -92.71 -0.79 17.61 16 25 H 0.12 6.23 6.28 -2.91 -0.02 6.22 16 26 H 0.17 3.94 8.06 -2.91 -0.02 3.91 16 27 H 0.20 3.38 8.06 -2.91 -0.02 3.35 16 28 H 0.11 2.16 8.10 -2.39 -0.02 2.14 16 29 H 0.10 2.18 8.11 -2.39 -0.02 2.17 16 30 H 0.19 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -79.20 282.23 3.26 -75.94 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.41 Total: 27.70 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 4.38 Total: 18.89 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -4.19 Total: -102.59 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.92 Total: -52.29 kcal Atomic # 9 Polarization: -11.72 SS G_CDS: 1.55 Total: -10.17 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Total: -79.20 3.26 -75.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185869862.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.485 kcal (2) G-P(sol) polarization free energy of solvation -79.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds