Wall clock time and date at job start Mon Mar 30 2020 01:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47523 * 2 1 4 4 S 1.81407 * 109.47295 * 120.00303 * 2 1 3 5 5 C 1.81403 * 102.99643 * 295.00026 * 4 2 1 6 6 C 1.53001 * 109.46951 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 H 1.07996 * 120.00171 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99895 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99967 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00045 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47119 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47066 * 119.99774 * 11 9 7 14 14 H 1.48501 * 109.47424 * 239.99891 * 11 9 7 15 15 C 1.50707 * 109.47109 * 240.00268 * 2 1 3 16 16 C 1.38209 * 120.00120 * 95.23757 * 15 2 1 17 17 C 1.38417 * 119.99787 * 180.29260 * 16 15 2 18 18 F 1.35104 * 119.99973 * 179.70090 * 17 16 15 19 19 C 1.38475 * 120.00521 * 359.72633 * 17 16 15 20 20 C 1.38165 * 119.99479 * 0.02562 * 19 17 16 21 21 C 1.38430 * 119.99883 * 274.99865 * 15 2 1 22 22 F 1.35104 * 119.99956 * 359.97438 * 21 15 2 23 23 H 1.08999 * 109.47459 * 59.99809 * 1 2 3 24 24 H 1.09008 * 109.47251 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47033 * 299.99686 * 1 2 3 26 26 H 1.08998 * 109.47072 * 299.99453 * 5 4 2 27 27 H 1.08995 * 109.47124 * 60.00052 * 5 4 2 28 28 H 1.09000 * 109.47040 * 300.00363 * 6 5 4 29 29 H 1.09007 * 109.47223 * 59.99696 * 6 5 4 30 30 H 0.96997 * 119.99973 * 179.97438 * 10 9 7 31 31 H 1.07999 * 119.99955 * 359.97438 * 16 15 2 32 32 H 1.07991 * 120.00557 * 179.97438 * 19 17 16 33 33 H 1.08000 * 119.99806 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1347 -0.8552 1.4811 5 6 1.5664 0.2152 2.8309 6 6 2.0039 -0.3786 4.1714 7 6 1.5324 0.5109 5.2927 8 1 0.9766 1.4101 5.0714 9 6 1.8114 0.1774 6.6011 10 7 2.4886 -0.9173 6.8706 11 14 1.2275 1.2804 7.9910 12 1 0.4935 2.4414 7.4266 13 1 0.3262 0.5124 8.8871 14 1 2.3992 1.7645 8.7643 15 6 2.0323 -0.7104 -1.2306 16 6 2.3656 0.0143 -2.3592 17 6 2.8213 -0.6387 -3.4914 18 9 3.1414 0.0692 -4.5967 19 6 2.9485 -2.0176 -3.4915 20 6 2.6201 -2.7416 -2.3614 21 6 2.1645 -2.0884 -1.2287 22 9 1.8437 -2.7963 -0.1237 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.0001 1.2083 2.7142 27 1 0.4792 0.2880 2.8037 28 1 1.5699 -1.3717 4.2878 29 1 3.0912 -0.4518 4.1988 30 1 2.6852 -1.1518 7.7910 31 1 2.2657 1.0897 -2.3594 32 1 3.3036 -2.5271 -4.3749 33 1 2.7189 -3.8171 -2.3616 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190919589.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:50 Heat of formation + Delta-G solvation = -93.965276 kcal Electronic energy + Delta-G solvation = -17818.026722 eV Core-core repulsion = 14604.905949 eV Total energy + Delta-G solvation = -3213.120773 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.074 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.94214 -49.89310 -40.04781 -35.78361 -35.36958 -32.92136 -31.47576 -30.35837 -27.29542 -25.43311 -23.98471 -23.39835 -22.23657 -18.72195 -18.68133 -18.40494 -18.26729 -16.92940 -16.73989 -16.49118 -16.34345 -15.78119 -15.59611 -15.36292 -15.06146 -14.92113 -14.40336 -14.12525 -13.99930 -13.68558 -13.56872 -13.03129 -12.92343 -12.83893 -12.62103 -12.34441 -12.18557 -11.94142 -11.65058 -11.19411 -10.61829 -10.59989 -10.17025 -9.54048 -8.56083 -8.23243 -6.37003 -0.15951 -0.03805 0.78255 1.40664 1.41248 1.54726 1.72426 2.32611 2.40278 3.03020 3.09876 3.22668 3.36605 3.65831 3.92664 3.98512 4.10623 4.17105 4.27048 4.39442 4.58041 4.71676 4.74501 4.90061 4.92533 4.95429 5.02564 5.06757 5.16840 5.38304 5.50061 5.73923 5.74574 6.11239 6.77677 7.32586 8.88826 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.041631 B = 0.003612 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.418149 B = 7749.676799 C = 8055.749802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.016 4.016 3 H 0.113 0.887 4 S -0.282 6.282 5 C -0.061 4.061 6 C 0.045 3.955 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.000 4.000 10 N -0.933 5.933 11 Si 0.973 3.027 12 H -0.258 1.258 13 H -0.277 1.277 14 H -0.278 1.278 15 C -0.082 4.082 16 C -0.112 4.112 17 C 0.083 3.917 18 F -0.137 7.137 19 C -0.114 4.114 20 C -0.121 4.121 21 C 0.078 3.922 22 F -0.128 7.128 23 H 0.091 0.909 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.077 0.923 28 H -0.006 1.006 29 H -0.007 1.007 30 H 0.265 0.735 31 H 0.163 0.837 32 H 0.175 0.825 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.810 0.578 -23.167 23.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 H 0.131 0.869 4 S -0.053 6.053 5 C -0.209 4.209 6 C 0.007 3.993 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.198 4.198 10 N -0.572 5.572 11 Si 0.797 3.203 12 H -0.182 1.182 13 H -0.203 1.203 14 H -0.203 1.203 15 C -0.084 4.084 16 C -0.132 4.132 17 C 0.064 3.936 18 F -0.116 7.116 19 C -0.133 4.133 20 C -0.140 4.140 21 C 0.058 3.942 22 F -0.106 7.106 23 H 0.110 0.890 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.013 0.987 29 H 0.012 0.988 30 H 0.074 0.926 31 H 0.181 0.819 32 H 0.193 0.807 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.168 -0.464 -22.956 22.990 hybrid contribution -0.654 1.275 1.138 1.829 sum -1.821 0.811 -21.818 21.909 Atomic orbital electron populations 1.22022 0.90922 1.03179 1.03534 1.22033 0.99990 1.01585 0.90872 0.86926 1.87538 1.76973 1.38843 1.01919 1.23423 1.02669 0.99471 0.95345 1.18648 0.95093 0.95312 0.90235 1.21586 1.35843 1.08942 0.91640 0.91447 1.26048 0.94998 0.96790 1.01984 1.70130 1.40704 1.26064 1.20327 0.85283 0.78154 0.78714 0.78181 1.18195 1.20307 1.20318 1.19235 1.02101 0.91929 0.95151 1.20934 0.99802 1.02043 0.90436 1.17661 1.02134 0.90273 0.83579 1.91521 1.90540 1.78676 1.50822 1.21302 1.00272 0.91616 1.00074 1.21267 0.99601 1.02536 0.90597 1.18049 1.01834 0.89626 0.84719 1.91567 1.90196 1.77924 1.50922 0.89043 0.92283 0.91917 0.90916 0.90475 0.98737 0.98834 0.92592 0.81897 0.80720 0.81462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.08 71.98 0.65 -2.59 16 2 C -0.02 -0.44 2.97 29.85 0.09 -0.35 16 3 H 0.11 2.66 8.05 -2.39 -0.02 2.64 16 4 S -0.28 -10.74 18.11 -56.49 -1.02 -11.77 16 5 C -0.06 -2.62 5.58 71.98 0.40 -2.22 16 6 C 0.05 2.50 4.98 29.85 0.15 2.65 16 7 C -0.54 -30.98 9.11 25.60 0.23 -30.75 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.00 0.00 5.46 84.65 0.46 0.47 16 10 N -0.93 -57.70 13.29 21.45 0.28 -57.42 16 11 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 12 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 13 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 14 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 15 C -0.08 -1.94 4.90 -19.82 -0.10 -2.04 16 16 C -0.11 -2.08 9.66 22.31 0.22 -1.87 16 17 C 0.08 1.44 7.30 22.37 0.16 1.60 16 18 F -0.14 -2.44 17.27 44.97 0.78 -1.66 16 19 C -0.11 -1.67 10.02 22.31 0.22 -1.45 16 20 C -0.12 -2.17 10.02 22.31 0.22 -1.95 16 21 C 0.08 1.96 6.96 22.37 0.16 2.11 16 22 F -0.13 -4.06 14.18 44.97 0.64 -3.42 16 23 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.06 1.56 6.92 -2.39 -0.02 1.54 16 26 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 27 H 0.08 3.12 7.14 -2.39 -0.02 3.10 16 28 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 29 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 30 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 32 H 0.18 1.46 8.06 -2.92 -0.02 1.44 16 33 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -68.06 302.79 6.68 -61.38 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: 1.11 Total: 3.07 kcal Atomic # 6 Polarization: -39.25 SS G_CDS: 2.87 Total: -36.37 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.28 Total: -57.42 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 1.41 Total: -5.09 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: -10.74 SS G_CDS: -1.02 Total: -11.77 kcal Total: -68.06 6.68 -61.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190919589.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.587 kcal (2) G-P(sol) polarization free energy of solvation -68.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds