Wall clock time and date at job start Mon Mar 30 2020 01:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47120 * 2 1 4 4 S 1.81401 * 109.47300 * 240.00276 * 2 1 3 5 5 C 1.81400 * 103.00097 * 64.99438 * 4 2 1 6 6 C 1.53006 * 109.47145 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47184 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99819 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00046 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99933 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99912 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47017 * 89.99937 * 11 9 7 13 13 H 1.48507 * 109.47241 * 209.99826 * 11 9 7 14 14 H 1.48500 * 109.47209 * 329.99791 * 11 9 7 15 15 C 1.50698 * 109.47506 * 120.00004 * 2 1 3 16 16 C 1.38418 * 120.02172 * 284.72818 * 15 2 1 17 17 F 1.35104 * 120.01650 * 359.97438 * 16 15 2 18 18 C 1.38484 * 119.97228 * 179.78841 * 16 15 2 19 19 C 1.38208 * 120.02452 * 0.48509 * 18 16 15 20 20 C 1.38212 * 120.04838 * 359.74171 * 19 18 16 21 21 C 1.38412 * 120.02739 * 104.99874 * 15 2 1 22 22 F 1.35105 * 120.01230 * 0.02562 * 21 15 2 23 23 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47177 * 299.99872 * 1 2 3 25 25 H 1.09000 * 109.47056 * 60.00071 * 1 2 3 26 26 H 1.09001 * 109.46713 * 60.00360 * 5 4 2 27 27 H 1.08993 * 109.47294 * 299.99893 * 5 4 2 28 28 H 1.09001 * 109.46801 * 300.00406 * 6 5 4 29 29 H 1.09001 * 109.46998 * 60.00003 * 6 5 4 30 30 H 0.97007 * 120.00011 * 180.02562 * 10 9 7 31 31 H 1.08000 * 119.98845 * 180.22630 * 18 16 15 32 32 H 1.07992 * 119.97444 * 179.76918 * 19 18 16 33 33 H 1.08000 * 119.98848 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8550 -1.4812 5 6 1.5664 0.2153 -2.8309 6 6 2.0050 -0.3778 -4.1714 7 6 1.5323 0.5111 -5.2928 8 1 0.9751 1.4095 -5.0714 9 6 1.8120 0.1781 -6.6011 10 7 1.3999 0.9541 -7.5797 11 14 2.7763 -1.3753 -6.9838 12 1 1.8361 -2.5117 -7.1563 13 1 3.5524 -1.1807 -8.2348 14 1 3.7071 -1.6685 -5.8644 15 6 2.0324 -0.7104 1.2304 16 6 1.9761 -0.0838 2.4634 17 9 1.4710 1.1652 2.5643 18 6 2.4340 -0.7393 3.5941 19 6 2.9564 -2.0146 3.4902 20 6 3.0174 -2.6393 2.2588 21 6 2.5557 -1.9876 1.1276 22 9 2.6169 -2.5980 -0.0761 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 2.0001 1.2085 -2.7141 27 1 0.4792 0.2881 -2.8038 28 1 3.0923 -0.4502 -4.1982 29 1 1.5718 -1.3711 -4.2884 30 1 1.5964 0.7196 -8.5002 31 1 2.3868 -0.2521 4.5568 32 1 3.3167 -2.5235 4.3719 33 1 3.4262 -3.6357 2.1787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194325533.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:04 Heat of formation + Delta-G solvation = -68.291050 kcal Electronic energy + Delta-G solvation = -18140.655578 eV Core-core repulsion = 14928.648124 eV Total energy + Delta-G solvation = -3212.007455 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.074 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.23677 -49.14767 -39.16196 -34.54018 -33.63221 -31.18583 -30.55097 -29.69667 -25.45457 -24.47206 -23.11719 -21.83683 -20.55624 -18.30018 -17.81013 -16.93791 -16.48840 -16.16751 -15.77945 -15.42598 -15.25180 -14.68822 -14.47343 -14.31915 -13.94935 -13.35105 -13.11705 -13.07085 -12.67289 -12.43776 -12.21322 -12.13856 -11.65702 -11.51467 -11.30425 -11.05494 -10.21638 -9.95172 -9.76043 -9.35199 -9.13324 -9.01911 -8.80444 -8.55051 -7.18153 -6.06064 -4.05141 0.67581 0.70969 2.00074 3.07707 3.16054 3.33064 3.39918 3.46183 3.67630 4.13397 4.20225 4.45604 4.48546 4.53154 4.84076 4.98628 5.14797 5.28220 5.44925 5.54816 5.59781 5.68537 5.73700 5.84284 5.84871 5.98686 6.11516 6.15562 6.48581 6.68735 7.19249 7.31959 7.72450 8.49282 8.96380 9.55342 11.06924 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.034193 B = 0.004385 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.681886 B = 6383.495476 C = 7021.654142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.033 4.033 3 H 0.100 0.900 4 S -0.218 6.218 5 C -0.093 4.093 6 C 0.006 3.994 7 C -0.519 4.519 8 H 0.072 0.928 9 C 0.070 3.930 10 N -0.902 5.902 11 Si 0.878 3.122 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.263 1.263 15 C -0.134 4.134 16 C 0.137 3.863 17 F -0.128 7.128 18 C -0.166 4.166 19 C -0.066 4.066 20 C -0.164 4.164 21 C 0.141 3.859 22 F -0.090 7.090 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.023 0.977 29 H 0.020 0.980 30 H 0.264 0.736 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 -5.936 24.844 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 H 0.118 0.882 4 S 0.010 5.990 5 C -0.240 4.240 6 C -0.032 4.032 7 C -0.558 4.558 8 H 0.091 0.909 9 C -0.132 4.132 10 N -0.540 5.540 11 Si 0.705 3.295 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.188 1.188 15 C -0.137 4.137 16 C 0.116 3.884 17 F -0.106 7.106 18 C -0.185 4.185 19 C -0.084 4.084 20 C -0.183 4.183 21 C 0.120 3.880 22 F -0.067 7.067 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.575 -6.830 24.528 25.591 hybrid contribution -0.283 0.630 -0.528 0.869 sum 2.292 -6.200 24.000 24.893 Atomic orbital electron populations 1.22048 0.91850 1.03330 1.02765 1.21908 0.99461 1.01804 0.92982 0.88212 1.87890 1.75895 1.35942 0.99241 1.23773 1.02833 1.00289 0.97110 1.19283 0.96974 0.96678 0.90309 1.21019 1.36001 1.09383 0.89410 0.90947 1.24970 0.95326 0.96740 0.96158 1.69905 1.46580 1.38030 0.99530 0.86787 0.80848 0.83830 0.78012 1.20101 1.21252 1.18792 1.19509 1.04820 0.94994 0.94348 1.17122 0.97856 0.80604 0.92836 1.91527 1.84567 1.37820 1.96729 1.21158 1.02948 0.96462 0.97945 1.20840 0.96585 0.93645 0.97313 1.21275 1.03619 1.01962 0.91491 1.17393 0.98447 0.90350 0.81781 1.91468 1.93504 1.81113 1.40651 0.91304 0.92039 0.91000 0.91386 0.91004 0.95844 0.96178 0.92620 0.83970 0.83941 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.04 37.16 0.34 -1.53 16 2 C -0.03 -0.48 2.69 -27.88 -0.08 -0.55 16 3 H 0.10 1.45 8.07 -51.92 -0.42 1.03 16 4 S -0.22 -3.97 17.16 -107.50 -1.84 -5.82 16 5 C -0.09 -1.95 5.58 37.16 0.21 -1.74 16 6 C 0.01 0.16 4.05 -27.88 -0.11 0.05 16 7 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 8 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 9 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.90 -28.10 13.96 55.43 0.77 -27.32 16 11 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 15 C -0.13 -1.72 5.11 -104.49 -0.53 -2.25 16 16 C 0.14 1.50 7.16 -39.42 -0.28 1.22 16 17 F -0.13 -1.49 16.33 2.25 0.04 -1.45 16 18 C -0.17 -1.35 10.03 -39.50 -0.40 -1.75 16 19 C -0.07 -0.47 10.04 -39.60 -0.40 -0.87 16 20 C -0.16 -1.49 10.03 -39.50 -0.40 -1.89 16 21 C 0.14 1.76 7.08 -39.43 -0.28 1.48 16 22 F -0.09 -1.36 13.05 2.25 0.03 -1.33 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.71 7.68 -51.93 -0.40 0.31 16 25 H 0.07 0.99 6.92 -51.93 -0.36 0.63 16 26 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 27 H 0.07 1.47 7.14 -51.93 -0.37 1.10 16 28 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 29 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 33 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 295.98 15.07 4.46 4.46 Total: -1.00 -31.75 295.98 -7.59 -39.34 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: -4.02 Total: -4.16 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -2.36 Total: -21.29 kcal Atomic # 7 Polarization: -28.10 SS G_CDS: 0.77 Total: -27.32 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.07 Total: -2.78 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Atomic # 16 Polarization: -3.97 SS G_CDS: -1.84 Total: -5.82 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.75 -7.59 -39.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194325533.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.949 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds