Wall clock time and date at job start Mon Mar 30 2020 01:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47120 * 2 1 4 4 S 1.81401 * 109.47300 * 240.00276 * 2 1 3 5 5 C 1.81400 * 103.00097 * 64.99438 * 4 2 1 6 6 C 1.53006 * 109.47145 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47184 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99819 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00046 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99933 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99912 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47017 * 89.99937 * 11 9 7 13 13 H 1.48507 * 109.47241 * 209.99826 * 11 9 7 14 14 H 1.48500 * 109.47209 * 329.99791 * 11 9 7 15 15 C 1.50698 * 109.47506 * 120.00004 * 2 1 3 16 16 C 1.38418 * 120.02172 * 284.72818 * 15 2 1 17 17 F 1.35104 * 120.01650 * 359.97438 * 16 15 2 18 18 C 1.38484 * 119.97228 * 179.78841 * 16 15 2 19 19 C 1.38208 * 120.02452 * 0.48509 * 18 16 15 20 20 C 1.38212 * 120.04838 * 359.74171 * 19 18 16 21 21 C 1.38412 * 120.02739 * 104.99874 * 15 2 1 22 22 F 1.35105 * 120.01230 * 0.02562 * 21 15 2 23 23 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47177 * 299.99872 * 1 2 3 25 25 H 1.09000 * 109.47056 * 60.00071 * 1 2 3 26 26 H 1.09001 * 109.46713 * 60.00360 * 5 4 2 27 27 H 1.08993 * 109.47294 * 299.99893 * 5 4 2 28 28 H 1.09001 * 109.46801 * 300.00406 * 6 5 4 29 29 H 1.09001 * 109.46998 * 60.00003 * 6 5 4 30 30 H 0.97007 * 120.00011 * 180.02562 * 10 9 7 31 31 H 1.08000 * 119.98845 * 180.22630 * 18 16 15 32 32 H 1.07992 * 119.97444 * 179.76918 * 19 18 16 33 33 H 1.08000 * 119.98848 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8550 -1.4812 5 6 1.5664 0.2153 -2.8309 6 6 2.0050 -0.3778 -4.1714 7 6 1.5323 0.5111 -5.2928 8 1 0.9751 1.4095 -5.0714 9 6 1.8120 0.1781 -6.6011 10 7 1.3999 0.9541 -7.5797 11 14 2.7763 -1.3753 -6.9838 12 1 1.8361 -2.5117 -7.1563 13 1 3.5524 -1.1807 -8.2348 14 1 3.7071 -1.6685 -5.8644 15 6 2.0324 -0.7104 1.2304 16 6 1.9761 -0.0838 2.4634 17 9 1.4710 1.1652 2.5643 18 6 2.4340 -0.7393 3.5941 19 6 2.9564 -2.0146 3.4902 20 6 3.0174 -2.6393 2.2588 21 6 2.5557 -1.9876 1.1276 22 9 2.6169 -2.5980 -0.0761 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 2.0001 1.2085 -2.7141 27 1 0.4792 0.2881 -2.8038 28 1 3.0923 -0.4502 -4.1982 29 1 1.5718 -1.3711 -4.2884 30 1 1.5964 0.7196 -8.5002 31 1 2.3868 -0.2521 4.5568 32 1 3.3167 -2.5235 4.3719 33 1 3.4262 -3.6357 2.1787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194325533.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:03 Heat of formation + Delta-G solvation = -85.620672 kcal Electronic energy + Delta-G solvation = -18141.407047 eV Core-core repulsion = 14928.648124 eV Total energy + Delta-G solvation = -3212.758923 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.15954 -50.06701 -39.93079 -35.77097 -35.49582 -33.28856 -31.28227 -30.61314 -27.50882 -25.41980 -23.90496 -23.17387 -22.18123 -19.16288 -19.12551 -18.73918 -17.42203 -17.10262 -16.64196 -16.46934 -16.37212 -16.36180 -15.71964 -15.62759 -15.35173 -14.80366 -14.71997 -14.21393 -13.97501 -13.70513 -13.30673 -13.05609 -12.99827 -12.91506 -12.74954 -12.40062 -12.07701 -11.85440 -11.69103 -11.39418 -10.82589 -10.37188 -9.94106 -9.76051 -8.63895 -8.35376 -6.40766 -0.08771 -0.04337 0.67398 1.33076 1.34389 1.47606 1.65288 2.32056 2.35876 2.85769 2.99429 3.19611 3.42341 3.74974 3.84082 3.88838 4.10041 4.20985 4.22644 4.29965 4.54242 4.65644 4.77627 4.80853 4.84572 5.00847 5.03964 5.06467 5.19272 5.19595 5.30758 5.52386 5.75903 6.18368 6.64329 7.23764 8.81025 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.034193 B = 0.004385 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.681886 B = 6383.495476 C = 7021.654142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.024 4.024 3 H 0.095 0.905 4 S -0.219 6.219 5 C -0.094 4.094 6 C 0.013 3.987 7 C -0.533 4.533 8 H 0.035 0.965 9 C 0.012 3.988 10 N -0.946 5.946 11 Si 0.948 3.052 12 H -0.263 1.263 13 H -0.277 1.277 14 H -0.253 1.253 15 C -0.156 4.156 16 C 0.122 3.878 17 F -0.136 7.136 18 C -0.152 4.152 19 C -0.048 4.048 20 C -0.156 4.156 21 C 0.106 3.894 22 F -0.112 7.112 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.020 0.980 29 H 0.021 0.979 30 H 0.269 0.731 31 H 0.174 0.826 32 H 0.188 0.812 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.172 -7.912 28.045 29.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 H 0.114 0.886 4 S 0.009 5.991 5 C -0.242 4.242 6 C -0.025 4.025 7 C -0.572 4.572 8 H 0.054 0.946 9 C -0.186 4.186 10 N -0.586 5.586 11 Si 0.771 3.229 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.177 1.177 15 C -0.159 4.159 16 C 0.102 3.898 17 F -0.115 7.115 18 C -0.170 4.170 19 C -0.065 4.065 20 C -0.175 4.175 21 C 0.086 3.914 22 F -0.090 7.090 23 H 0.087 0.913 24 H 0.098 0.902 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.191 0.809 32 H 0.205 0.795 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.729 -8.799 27.735 29.335 hybrid contribution -0.663 1.294 -1.314 1.960 sum 3.065 -7.504 26.421 27.636 Atomic orbital electron populations 1.21999 0.91073 1.03404 1.03034 1.21925 1.00143 1.01320 0.91892 0.88639 1.87910 1.76189 1.35127 0.99863 1.23528 1.02688 1.00605 0.97373 1.19113 0.96441 0.95886 0.91074 1.21321 1.35685 1.08955 0.91272 0.94622 1.25925 0.96389 1.00428 0.95870 1.70042 1.48113 1.40231 1.00189 0.85691 0.79599 0.79372 0.78275 1.18823 1.20215 1.17690 1.19444 1.06728 0.95581 0.94102 1.17343 0.98829 0.80571 0.93096 1.91508 1.84845 1.38377 1.96740 1.21596 1.00766 0.96598 0.98067 1.21377 0.94376 0.92939 0.97853 1.21614 1.02187 1.02715 0.90944 1.17777 1.00712 0.90829 0.82040 1.91358 1.94015 1.81333 1.42310 0.91304 0.90152 0.92208 0.92096 0.91273 0.96160 0.96069 0.92184 0.80870 0.79491 0.81689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.04 71.98 0.65 -2.95 16 2 C -0.02 -0.70 2.69 29.85 0.08 -0.62 16 3 H 0.10 2.82 8.07 -2.39 -0.02 2.80 16 4 S -0.22 -8.07 17.16 -56.49 -0.97 -9.04 16 5 C -0.09 -4.11 5.58 71.98 0.40 -3.71 16 6 C 0.01 0.69 4.05 29.85 0.12 0.81 16 7 C -0.53 -32.20 9.66 25.60 0.25 -31.95 16 8 H 0.04 2.34 7.99 -2.91 -0.02 2.31 16 9 C 0.01 0.70 5.47 84.65 0.46 1.17 16 10 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 11 Si 0.95 46.09 27.47 68.60 1.88 47.98 16 12 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 14 H -0.25 -11.81 6.54 99.48 0.65 -11.16 16 15 C -0.16 -3.83 5.11 -19.78 -0.10 -3.93 16 16 C 0.12 2.41 7.16 22.37 0.16 2.57 16 17 F -0.14 -2.94 16.33 44.97 0.73 -2.21 16 18 C -0.15 -1.82 10.03 22.32 0.22 -1.60 16 19 C -0.05 -0.44 10.04 22.26 0.22 -0.22 16 20 C -0.16 -2.30 10.03 22.32 0.22 -2.07 16 21 C 0.11 2.52 7.08 22.37 0.16 2.67 16 22 F -0.11 -3.35 13.05 44.97 0.59 -2.77 16 23 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 24 H 0.08 1.81 7.68 -2.39 -0.02 1.79 16 25 H 0.06 1.70 6.92 -2.39 -0.02 1.68 16 26 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.07 2.97 7.14 -2.39 -0.02 2.95 16 28 H 0.02 1.04 7.20 -2.39 -0.02 1.02 16 29 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 30 H 0.27 15.95 8.31 -92.70 -0.77 15.18 16 31 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 32 H 0.19 0.13 8.06 -2.91 -0.02 0.11 16 33 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -71.47 295.98 6.44 -65.02 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: 1.06 Total: 1.02 kcal Atomic # 6 Polarization: -42.68 SS G_CDS: 2.85 Total: -39.82 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 0.30 Total: -60.18 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 1.32 Total: -4.98 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.88 Total: 47.98 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -0.97 Total: -9.04 kcal Total: -71.47 6.44 -65.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194325533.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.598 kcal (2) G-P(sol) polarization free energy of solvation -71.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds