Wall clock time and date at job start Mon Mar 30 2020 00:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46858 * 2 1 4 4 C 1.50698 * 109.46837 * 119.99439 * 2 1 3 5 5 H 1.07997 * 119.99802 * 85.87942 * 4 2 1 6 6 C 1.37875 * 120.00351 * 265.86648 * 4 2 1 7 7 N 1.31513 * 120.00160 * 177.63663 * 6 4 2 8 8 Si 1.86801 * 119.99892 * 357.65023 * 6 4 2 9 9 H 1.48509 * 109.46555 * 274.91328 * 8 6 4 10 10 H 1.48492 * 109.47414 * 34.91036 * 8 6 4 11 11 H 1.48503 * 109.47090 * 154.92065 * 8 6 4 12 12 N 1.46493 * 109.47181 * 240.00037 * 2 1 3 13 13 C 1.34777 * 120.00036 * 84.99862 * 12 2 1 14 14 O 1.21531 * 120.00279 * 359.97438 * 13 12 2 15 15 C 1.48004 * 119.99695 * 179.97438 * 13 12 2 16 16 C 1.39940 * 120.93522 * 359.71897 * 15 13 12 17 17 C 1.37997 * 119.06470 * 179.77465 * 16 15 13 18 18 N 1.31888 * 120.99456 * 0.51115 * 17 16 15 19 19 C 1.31797 * 122.07931 * 359.74101 * 18 17 16 20 20 Cl 1.73600 * 119.59067 * 179.97438 * 19 18 17 21 21 C 1.38702 * 120.81398 * 359.97438 * 19 18 17 22 22 F 1.35102 * 120.54525 * 180.02562 * 21 19 18 23 23 H 1.09000 * 109.47220 * 176.13458 * 1 2 3 24 24 H 1.09000 * 109.47341 * 296.13363 * 1 2 3 25 25 H 1.08996 * 109.47554 * 56.13746 * 1 2 3 26 26 H 0.96997 * 120.00529 * 179.97438 * 7 6 4 27 27 H 0.97005 * 119.99668 * 264.99489 * 12 2 1 28 28 H 1.08002 * 120.47099 * 0.02562 * 16 15 13 29 29 H 1.07998 * 119.49887 * 180.25577 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.1488 -1.7839 1.2245 6 6 2.3432 0.0105 2.3640 7 7 2.7371 -0.6135 3.4526 8 14 2.2045 1.8733 2.3535 9 1 3.4568 2.4597 1.8118 10 1 1.0585 2.2797 1.5012 11 1 1.9885 2.3614 3.7393 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0182 -2.3571 14 8 1.8575 1.1608 -2.4118 15 6 2.6409 -0.7158 -3.5653 16 6 2.9854 -2.0715 -3.5230 17 6 3.4373 -2.6846 -4.6737 18 7 3.5565 -2.0101 -5.8008 19 6 3.2491 -0.7314 -5.8871 20 17 3.4316 0.0937 -7.4036 21 6 2.7816 -0.0368 -4.7813 22 9 2.4676 1.2738 -4.8760 23 1 -0.3633 -1.0253 -0.0693 24 1 -0.3634 0.4526 0.9226 25 1 -0.3634 0.5726 -0.8533 26 1 2.9562 -0.1064 4.2500 27 1 2.2491 -1.6318 -1.1525 28 1 2.8950 -2.6311 -2.6037 29 1 3.7011 -3.7316 -4.6500 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270706670.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:33 Heat of formation + Delta-G solvation = -73.235490 kcal Electronic energy + Delta-G solvation = -18224.308306 eV Core-core repulsion = 14894.129605 eV Total energy + Delta-G solvation = -3330.178701 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.047 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.22240 -41.68006 -40.32289 -37.91359 -36.87090 -34.67571 -33.93805 -32.02878 -31.39022 -27.35019 -26.40151 -24.77825 -23.06894 -21.58971 -20.08854 -18.96718 -18.65468 -18.31034 -17.38236 -17.15874 -17.01144 -16.00793 -15.88671 -15.55612 -15.19720 -15.04378 -14.76346 -14.53703 -14.30631 -13.52683 -13.38105 -13.10295 -12.96662 -12.84071 -12.55509 -12.45659 -11.90488 -11.54308 -11.26483 -11.17942 -10.91202 -10.82280 -10.11728 -9.98139 -8.40137 -6.46600 -0.77300 -0.52298 0.43257 1.28368 1.34823 1.43907 1.64199 2.02043 2.25956 2.37902 2.58518 2.98339 3.21597 3.30929 3.41564 3.78833 4.20967 4.39865 4.49016 4.56931 4.71417 4.78428 5.05133 5.14778 5.31123 5.42391 5.58566 6.06657 6.28754 6.57055 6.67906 7.12242 7.25619 8.74031 Molecular weight = 272.05amu Principal moments of inertia in cm(-1) A = 0.033381 B = 0.004741 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.594600 B = 5904.132675 C = 6340.881881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.234 3.766 3 H 0.029 0.971 4 C -0.525 4.525 5 H 0.067 0.933 6 C 0.038 3.962 7 N -0.925 5.925 8 Si 0.918 3.082 9 H -0.277 1.277 10 H -0.255 1.255 11 H -0.278 1.278 12 N -0.682 5.682 13 C 0.542 3.458 14 O -0.575 6.575 15 C -0.120 4.120 16 C -0.088 4.088 17 C 0.124 3.876 18 N -0.446 5.446 19 C 0.130 3.870 20 Cl -0.006 7.006 21 C 0.096 3.904 22 F -0.114 7.114 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.034 0.966 26 H 0.271 0.729 27 H 0.411 0.589 28 H 0.192 0.808 29 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.063 -5.680 -17.110 18.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.131 3.869 3 H 0.047 0.953 4 C -0.563 4.563 5 H 0.085 0.915 6 C -0.163 4.163 7 N -0.563 5.563 8 Si 0.743 3.257 9 H -0.203 1.203 10 H -0.179 1.179 11 H -0.203 1.203 12 N -0.332 5.332 13 C 0.327 3.673 14 O -0.456 6.456 15 C -0.131 4.131 16 C -0.109 4.109 17 C -0.033 4.033 18 N -0.157 5.157 19 C -0.035 4.035 20 Cl 0.022 6.978 21 C 0.072 3.928 22 F -0.092 7.092 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.249 0.751 28 H 0.209 0.791 29 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 1.202 -5.115 -17.781 18.541 hybrid contribution -0.197 1.507 0.988 1.813 sum 1.005 -3.608 -16.793 17.205 Atomic orbital electron populations 1.22148 0.96706 1.01544 0.99883 1.18967 0.92225 0.93142 0.82571 0.95260 1.21130 1.44489 0.95307 0.95351 0.91468 1.25510 0.93740 1.01828 0.95244 1.69943 1.45678 1.37666 1.03030 0.86188 0.79730 0.82001 0.77736 1.20299 1.17928 1.20326 1.46236 1.63863 1.14627 1.08438 1.18320 0.78739 0.86430 0.83762 1.90790 1.52251 1.17070 1.85449 1.20658 1.03516 0.96666 0.92306 1.22939 0.93788 0.91085 1.03068 1.23595 0.93077 1.02153 0.84483 1.67097 1.13575 1.04896 1.30135 1.21653 1.02206 0.91517 0.88129 1.98426 1.95756 1.75524 1.28048 1.18510 1.00802 0.79847 0.93660 1.91597 1.89694 1.31521 1.96373 0.91587 0.92973 0.94736 0.91968 0.75101 0.79107 0.75213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.81 9.44 71.98 0.68 -5.13 15 2 C 0.23 10.37 2.16 44.25 0.10 10.47 15 3 H 0.03 1.45 4.89 -2.38 -0.01 1.44 15 4 C -0.52 -26.37 9.05 25.60 0.23 -26.14 15 5 H 0.07 3.51 8.06 -2.91 -0.02 3.48 15 6 C 0.04 2.04 5.47 84.65 0.46 2.50 15 7 N -0.92 -52.68 13.96 21.45 0.30 -52.38 15 8 Si 0.92 43.02 26.74 68.60 1.83 44.85 15 9 H -0.28 -13.11 7.11 99.48 0.71 -12.41 15 10 H -0.26 -11.67 6.87 99.48 0.68 -10.99 15 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 15 12 N -0.68 -24.42 5.03 -448.84 -2.26 -26.68 15 13 C 0.54 19.87 7.76 86.83 0.67 20.54 15 14 O -0.57 -26.23 15.14 -3.81 -0.06 -26.29 15 15 C -0.12 -3.31 5.91 -19.85 -0.12 -3.43 15 16 C -0.09 -1.51 9.61 22.63 0.22 -1.29 15 17 C 0.12 1.72 11.16 84.63 0.94 2.66 15 18 N -0.45 -9.21 10.31 -186.68 -1.92 -11.13 15 19 C 0.13 3.23 7.28 84.81 0.62 3.85 15 20 Cl -0.01 -0.14 28.78 -2.72 -0.08 -0.22 15 21 C 0.10 2.81 7.30 22.80 0.17 2.98 15 22 F -0.11 -3.94 15.29 44.97 0.69 -3.26 15 23 H 0.07 2.38 8.14 -2.39 -0.02 2.36 15 24 H 0.05 2.14 7.92 -2.39 -0.02 2.12 15 25 H 0.03 1.35 8.14 -2.39 -0.02 1.33 15 26 H 0.27 14.59 8.31 -92.71 -0.77 13.82 15 27 H 0.41 11.64 6.73 -92.70 -0.62 11.02 15 28 H 0.19 2.06 6.54 -2.91 -0.02 2.04 15 29 H 0.23 0.87 8.06 -2.91 -0.02 0.84 15 Total: -1.00 -67.99 278.26 3.04 -64.94 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: 0.57 Total: 3.16 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 3.97 Total: 7.00 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -3.88 Total: -90.19 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.06 Total: -26.29 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.69 Total: -3.26 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.83 Total: 44.85 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.08 Total: -0.22 kcal Total: -67.99 3.04 -64.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270706670.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.293 kcal (2) G-P(sol) polarization free energy of solvation -67.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds