Wall clock time and date at job start Mon Mar 30 2020 01:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86799 * 120.00017 * 2 1 4 4 H 1.48507 * 109.47304 * 275.00304 * 3 2 1 5 5 H 1.48503 * 109.47108 * 34.99845 * 3 2 1 6 6 H 1.48497 * 109.47302 * 155.00358 * 3 2 1 7 7 C 1.40117 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00361 * 174.94040 * 7 2 1 9 9 C 1.46186 * 119.99972 * 354.93290 * 7 2 1 10 10 O 1.21722 * 119.99619 * 5.06071 * 9 7 2 11 11 N 1.34773 * 119.99992 * 185.06027 * 9 7 2 12 12 C 1.39047 * 119.99999 * 185.11256 * 11 9 7 13 13 C 1.39073 * 119.67157 * 174.90533 * 12 11 9 14 14 C 1.38486 * 119.21850 * 179.97438 * 13 12 11 15 15 C 1.38600 * 118.56582 * 359.97438 * 14 13 12 16 16 C 1.38874 * 119.27483 * 0.02562 * 15 14 13 17 17 O 1.35655 * 119.63842 * 179.97438 * 16 15 14 18 18 C 1.42898 * 117.00014 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47328 * 180.02562 * 18 17 16 20 20 F 1.39905 * 109.46666 * 299.99797 * 19 18 17 21 21 F 1.39895 * 109.47261 * 59.99552 * 19 18 17 22 22 N 1.32278 * 120.72221 * 0.27081 * 16 15 14 23 23 H 0.96998 * 119.99664 * 359.97438 * 1 2 3 24 24 H 0.97005 * 119.99908 * 5.10787 * 11 9 7 25 25 H 1.07998 * 120.38592 * 0.02562 * 13 12 11 26 26 H 1.08007 * 120.71847 * 179.97438 * 14 13 12 27 27 H 1.07999 * 120.36420 * 180.02562 * 15 14 13 28 28 H 1.09002 * 109.47361 * 299.99625 * 18 17 16 29 29 H 1.08997 * 109.47452 * 59.99619 * 18 17 16 30 30 H 1.08995 * 109.47213 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3822 2.1075 -1.3948 5 1 1.4947 2.6199 0.8030 6 1 3.5868 1.4120 0.5916 7 6 2.0070 -1.2134 -0.0005 8 1 3.0838 -1.2153 -0.0830 9 6 1.2804 -2.4770 0.1107 10 8 0.0632 -2.4811 0.1110 11 7 1.9582 -3.6374 0.2129 12 6 1.2712 -4.8463 0.2117 13 6 1.9816 -6.0419 0.2102 14 6 1.2879 -7.2405 0.2095 15 6 -0.0977 -7.2043 0.2108 16 6 -0.7449 -5.9756 0.2122 17 8 -2.1007 -5.9315 0.2130 18 6 -2.7078 -4.6379 0.2150 19 6 -4.2304 -4.7890 0.2162 20 9 -4.6302 -5.4900 -0.9266 21 9 -4.6283 -5.4927 1.3580 22 7 -0.0538 -4.8477 0.2070 23 1 -0.4849 0.8401 0.0004 24 1 2.9253 -3.6292 0.2873 25 1 3.0616 -6.0356 0.2105 26 1 1.8151 -8.1831 0.2079 27 1 -0.6678 -8.1215 0.2106 28 1 -2.3966 -4.0919 1.1056 29 1 -2.3974 -4.0894 -0.6743 30 1 -4.6934 -3.8023 0.2182 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294732480.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:46 Heat of formation + Delta-G solvation = -130.890668 kcal Electronic energy + Delta-G solvation = -20539.403307 eV Core-core repulsion = 16778.388115 eV Total energy + Delta-G solvation = -3761.015192 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.75772 -46.78623 -40.16779 -38.17861 -36.74370 -33.53214 -32.46243 -31.66150 -30.40663 -28.54150 -26.42428 -23.73918 -22.62962 -22.17991 -20.08381 -18.59690 -17.41040 -17.28948 -16.87069 -16.58460 -15.71856 -15.53147 -15.42687 -15.30398 -14.78004 -13.95733 -13.80264 -13.52543 -13.20299 -13.15741 -12.83367 -12.58347 -12.22688 -12.08802 -11.71652 -11.35628 -11.20816 -10.80893 -10.79882 -10.69212 -10.38337 -9.70818 -9.10667 -9.00870 -8.75616 -7.58895 -7.26224 -6.38783 -4.86135 1.77456 1.87055 3.03068 3.10767 3.14115 3.17439 3.87770 3.99116 4.18101 4.23111 4.37821 4.57118 4.77501 5.01972 5.07296 5.50198 5.53752 5.64084 5.66594 5.80286 5.90109 5.98581 6.32249 6.63290 6.71851 7.23493 7.43966 7.50965 7.86457 8.05572 8.49830 8.80441 9.20828 10.36197 10.52984 Molecular weight = 272.08amu Principal moments of inertia in cm(-1) A = 0.016926 B = 0.005911 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.908264 B = 4736.056636 C = 6209.288102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.087 3.913 3 Si 0.912 3.088 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.532 3.468 10 O -0.515 6.515 11 N -0.670 5.670 12 C 0.430 3.570 13 C -0.276 4.276 14 C -0.015 4.015 15 C -0.255 4.255 16 C 0.350 3.650 17 O -0.304 6.304 18 C 0.026 3.974 19 C 0.269 3.731 20 F -0.204 7.204 21 F -0.204 7.204 22 N -0.526 5.526 23 H 0.271 0.729 24 H 0.401 0.599 25 H 0.129 0.871 26 H 0.134 0.866 27 H 0.130 0.870 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.702 -8.248 0.582 8.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.134 4.134 3 Si 0.737 3.263 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.336 3.664 10 O -0.391 6.391 11 N -0.314 5.314 12 C 0.195 3.805 13 C -0.301 4.301 14 C -0.041 4.041 15 C -0.278 4.278 16 C 0.168 3.832 17 O -0.211 6.211 18 C -0.050 4.050 19 C 0.216 3.784 20 F -0.185 7.185 21 F -0.186 7.186 22 N -0.256 5.256 23 H 0.082 0.918 24 H 0.236 0.764 25 H 0.147 0.853 26 H 0.152 0.848 27 H 0.148 0.852 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.409 -7.398 0.557 7.800 hybrid contribution 1.419 0.193 0.030 1.432 sum -0.990 -7.205 0.586 7.296 Atomic orbital electron populations 1.69975 1.07140 1.27753 1.33976 1.25702 0.94706 1.00441 0.92521 0.86273 0.80247 0.81001 0.78821 1.19688 1.20250 1.18727 1.20848 0.94143 0.89044 1.53508 0.91033 1.18539 0.87878 0.81755 0.78227 1.90674 1.13067 1.84609 1.50721 1.44669 1.10110 1.04112 1.72459 1.18378 0.87035 0.86860 0.88183 1.21296 1.00546 0.91813 1.16405 1.20934 0.92667 0.97625 0.92846 1.20672 0.94479 0.96179 1.16428 1.19624 0.83402 0.89641 0.90494 1.86177 1.16305 1.30371 1.88253 1.23731 0.88772 0.85063 1.07479 1.22250 0.93527 0.91464 0.71167 1.92985 1.92151 1.82142 1.51240 1.92981 1.92209 1.82037 1.51331 1.67433 1.08004 1.27489 1.22707 0.91778 0.76432 0.85289 0.84836 0.85219 0.88021 0.87804 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.24 11.84 55.55 0.66 -20.58 16 2 C 0.09 2.28 5.50 -17.35 -0.10 2.18 16 3 Si 0.91 18.96 29.56 -169.99 -5.03 13.93 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.54 -14.23 9.53 -35.69 -0.34 -14.57 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.29 16 9 C 0.53 14.32 7.69 -13.07 -0.10 14.22 16 10 O -0.51 -15.41 13.28 5.17 0.07 -15.34 16 11 N -0.67 -14.61 5.37 -12.79 -0.07 -14.68 16 12 C 0.43 8.99 7.41 -154.92 -1.15 7.84 16 13 C -0.28 -4.47 9.94 -39.18 -0.39 -4.86 16 14 C -0.02 -0.22 10.16 -39.36 -0.40 -0.62 16 15 C -0.25 -4.19 10.04 -39.21 -0.39 -4.59 16 16 C 0.35 6.99 7.49 -17.12 -0.13 6.86 16 17 O -0.30 -5.85 10.00 -18.67 -0.19 -6.04 16 18 C 0.03 0.47 5.53 37.16 0.21 0.67 16 19 C 0.27 3.90 5.63 37.16 0.21 4.11 16 20 F -0.20 -3.22 17.28 2.25 0.04 -3.18 16 21 F -0.20 -3.21 17.28 2.25 0.04 -3.17 16 22 N -0.53 -11.94 6.72 -12.47 -0.08 -12.02 16 23 H 0.27 6.87 8.29 -40.82 -0.34 6.53 16 24 H 0.40 7.17 8.68 -40.82 -0.35 6.82 16 25 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 26 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 27 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 28 H 0.10 1.96 8.11 -51.93 -0.42 1.54 16 29 H 0.10 2.03 8.10 -51.93 -0.42 1.61 16 30 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 284.92 15.07 4.29 4.29 Total: -1.00 -33.19 284.92 -5.28 -38.47 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -2.43 Total: 7.08 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: -2.58 Total: 11.24 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.51 Total: -47.28 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.12 Total: -21.38 kcal Atomic # 9 Polarization: -6.43 SS G_CDS: 0.08 Total: -6.35 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.19 -5.28 -38.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294732480.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.422 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds