Wall clock time and date at job start Mon Mar 30 2020 01:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86799 * 120.00017 * 2 1 4 4 H 1.48507 * 109.47304 * 275.00304 * 3 2 1 5 5 H 1.48503 * 109.47108 * 34.99845 * 3 2 1 6 6 H 1.48497 * 109.47302 * 155.00358 * 3 2 1 7 7 C 1.40117 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00361 * 174.94040 * 7 2 1 9 9 C 1.46186 * 119.99972 * 354.93290 * 7 2 1 10 10 O 1.21722 * 119.99619 * 5.06071 * 9 7 2 11 11 N 1.34773 * 119.99992 * 185.06027 * 9 7 2 12 12 C 1.39047 * 119.99999 * 185.11256 * 11 9 7 13 13 C 1.39073 * 119.67157 * 174.90533 * 12 11 9 14 14 C 1.38486 * 119.21850 * 179.97438 * 13 12 11 15 15 C 1.38600 * 118.56582 * 359.97438 * 14 13 12 16 16 C 1.38874 * 119.27483 * 0.02562 * 15 14 13 17 17 O 1.35655 * 119.63842 * 179.97438 * 16 15 14 18 18 C 1.42898 * 117.00014 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47328 * 180.02562 * 18 17 16 20 20 F 1.39905 * 109.46666 * 299.99797 * 19 18 17 21 21 F 1.39895 * 109.47261 * 59.99552 * 19 18 17 22 22 N 1.32278 * 120.72221 * 0.27081 * 16 15 14 23 23 H 0.96998 * 119.99664 * 359.97438 * 1 2 3 24 24 H 0.97005 * 119.99908 * 5.10787 * 11 9 7 25 25 H 1.07998 * 120.38592 * 0.02562 * 13 12 11 26 26 H 1.08007 * 120.71847 * 179.97438 * 14 13 12 27 27 H 1.07999 * 120.36420 * 180.02562 * 15 14 13 28 28 H 1.09002 * 109.47361 * 299.99625 * 18 17 16 29 29 H 1.08997 * 109.47452 * 59.99619 * 18 17 16 30 30 H 1.08995 * 109.47213 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3822 2.1075 -1.3948 5 1 1.4947 2.6199 0.8030 6 1 3.5868 1.4120 0.5916 7 6 2.0070 -1.2134 -0.0005 8 1 3.0838 -1.2153 -0.0830 9 6 1.2804 -2.4770 0.1107 10 8 0.0632 -2.4811 0.1110 11 7 1.9582 -3.6374 0.2129 12 6 1.2712 -4.8463 0.2117 13 6 1.9816 -6.0419 0.2102 14 6 1.2879 -7.2405 0.2095 15 6 -0.0977 -7.2043 0.2108 16 6 -0.7449 -5.9756 0.2122 17 8 -2.1007 -5.9315 0.2130 18 6 -2.7078 -4.6379 0.2150 19 6 -4.2304 -4.7890 0.2162 20 9 -4.6302 -5.4900 -0.9266 21 9 -4.6283 -5.4927 1.3580 22 7 -0.0538 -4.8477 0.2070 23 1 -0.4849 0.8401 0.0004 24 1 2.9253 -3.6292 0.2873 25 1 3.0616 -6.0356 0.2105 26 1 1.8151 -8.1831 0.2079 27 1 -0.6678 -8.1215 0.2106 28 1 -2.3966 -4.0919 1.1056 29 1 -2.3974 -4.0894 -0.6743 30 1 -4.6934 -3.8023 0.2182 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294732480.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:45 Heat of formation + Delta-G solvation = -154.912445 kcal Electronic energy + Delta-G solvation = -20540.444969 eV Core-core repulsion = 16778.388115 eV Total energy + Delta-G solvation = -3762.056855 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.01289 -48.04350 -41.63974 -39.80822 -38.41930 -35.29492 -34.43857 -33.08937 -31.83542 -30.04566 -28.30856 -25.14467 -24.12521 -23.61086 -21.81084 -20.12233 -19.08470 -18.58521 -18.31431 -17.98278 -17.44394 -16.97575 -16.88328 -16.78260 -16.29328 -15.62750 -15.37580 -14.90589 -14.65863 -14.46618 -14.42196 -14.05154 -13.95120 -13.37098 -13.18076 -12.93879 -12.85015 -12.67465 -12.38391 -12.07984 -12.02932 -11.19881 -10.89193 -10.68730 -10.36709 -9.52100 -8.79641 -8.32754 -6.90649 0.33392 0.54820 1.40600 1.41669 1.57197 1.82573 2.19643 2.41872 2.60483 2.73361 2.97489 3.17993 3.44495 3.62152 3.67261 3.91205 4.19572 4.23946 4.37030 4.43861 4.48716 4.63128 5.04444 5.28046 5.33276 5.46651 5.71437 5.97261 6.08467 6.34112 6.79961 6.90036 7.52416 8.43172 8.60322 Molecular weight = 272.08amu Principal moments of inertia in cm(-1) A = 0.016926 B = 0.005911 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.908264 B = 4736.056636 C = 6209.288102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.032 3.968 3 Si 0.998 3.002 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.248 1.248 7 C -0.566 4.566 8 H 0.092 0.908 9 C 0.517 3.483 10 O -0.560 6.560 11 N -0.669 5.669 12 C 0.387 3.613 13 C -0.254 4.254 14 C -0.001 4.001 15 C -0.241 4.241 16 C 0.312 3.688 17 O -0.312 6.312 18 C 0.032 3.968 19 C 0.281 3.719 20 F -0.209 7.209 21 F -0.209 7.209 22 N -0.572 5.572 23 H 0.276 0.724 24 H 0.418 0.582 25 H 0.168 0.832 26 H 0.191 0.809 27 H 0.157 0.843 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.130 -9.457 0.630 9.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.185 4.185 3 Si 0.817 3.183 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.171 1.171 7 C -0.602 4.602 8 H 0.110 0.890 9 C 0.322 3.678 10 O -0.439 6.439 11 N -0.315 5.315 12 C 0.155 3.845 13 C -0.278 4.278 14 C -0.026 4.026 15 C -0.264 4.264 16 C 0.132 3.868 17 O -0.220 6.220 18 C -0.045 4.045 19 C 0.227 3.773 20 F -0.190 7.190 21 F -0.190 7.190 22 N -0.302 5.302 23 H 0.086 0.914 24 H 0.255 0.745 25 H 0.185 0.815 26 H 0.208 0.792 27 H 0.175 0.825 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.541 -8.675 0.607 8.713 hybrid contribution 0.880 0.366 0.014 0.953 sum 0.339 -8.309 0.620 8.339 Atomic orbital electron populations 1.70135 1.09402 1.29161 1.35344 1.26912 0.95550 1.04728 0.91269 0.84993 0.79013 0.75152 0.79116 1.18891 1.19882 1.17078 1.21387 0.95300 0.89630 1.53890 0.88987 1.18892 0.87699 0.83470 0.77765 1.90635 1.14840 1.85912 1.52548 1.44117 1.10712 1.03633 1.73044 1.18815 0.87070 0.87816 0.90837 1.21717 1.02362 0.90405 1.13357 1.21587 0.91749 0.99140 0.90167 1.21184 0.95807 0.95624 1.13769 1.20126 0.83581 0.90444 0.92652 1.86167 1.16591 1.30589 1.88619 1.23616 0.91228 0.84648 1.05041 1.22417 0.91192 0.93045 0.70600 1.92970 1.91920 1.82525 1.51628 1.92967 1.91967 1.82406 1.51661 1.67187 1.09662 1.29768 1.23596 0.91372 0.74509 0.81499 0.79208 0.82502 0.90335 0.90419 0.80850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.14 11.84 21.85 0.26 -46.88 16 2 C 0.03 1.68 5.50 85.33 0.47 2.15 16 3 Si 1.00 38.96 29.56 68.60 2.03 40.99 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 5 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 6 H -0.25 -8.94 7.11 99.48 0.71 -8.24 16 7 C -0.57 -30.46 9.53 24.79 0.24 -30.22 16 8 H 0.09 4.37 7.85 -2.91 -0.02 4.34 16 9 C 0.52 29.00 7.69 86.31 0.66 29.67 16 10 O -0.56 -35.56 13.28 -4.42 -0.06 -35.61 16 11 N -0.67 -29.71 5.37 -312.60 -1.68 -31.39 16 12 C 0.39 16.25 7.41 133.00 0.99 17.24 16 13 C -0.25 -7.50 9.94 22.53 0.22 -7.27 16 14 C 0.00 -0.04 10.16 22.42 0.23 0.19 16 15 C -0.24 -7.37 10.04 22.51 0.23 -7.14 16 16 C 0.31 12.64 7.49 84.78 0.63 13.28 16 17 O -0.31 -12.42 10.00 -89.70 -0.90 -13.32 16 18 C 0.03 1.21 5.53 71.98 0.40 1.61 16 19 C 0.28 8.19 5.63 71.98 0.41 8.60 16 20 F -0.21 -6.59 17.28 44.97 0.78 -5.81 16 21 F -0.21 -6.52 17.28 44.97 0.78 -5.75 16 22 N -0.57 -26.96 6.72 -306.21 -2.06 -29.01 16 23 H 0.28 14.53 8.29 -92.71 -0.77 13.76 16 24 H 0.42 14.82 8.68 -92.70 -0.80 14.01 16 25 H 0.17 3.58 8.06 -2.91 -0.02 3.56 16 26 H 0.19 2.61 8.06 -2.91 -0.02 2.58 16 27 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 28 H 0.08 3.32 8.11 -2.39 -0.02 3.30 16 29 H 0.08 3.33 8.10 -2.39 -0.02 3.32 16 30 H 0.17 3.58 8.14 -2.39 -0.02 3.56 16 Total: -1.00 -77.58 284.92 4.02 -73.56 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.40 Total: 25.14 kcal Atomic # 6 Polarization: 23.62 SS G_CDS: 4.47 Total: 28.09 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -3.48 Total: -107.29 kcal Atomic # 8 Polarization: -47.98 SS G_CDS: -0.96 Total: -48.93 kcal Atomic # 9 Polarization: -13.11 SS G_CDS: 1.55 Total: -11.56 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -77.58 4.02 -73.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294732480.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.350 kcal (2) G-P(sol) polarization free energy of solvation -77.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds