Wall clock time and date at job start Mon Mar 30 2020 01:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47085 * 2 1 4 4 C 1.36499 * 125.98449 * 90.02645 * 3 2 1 5 5 O 1.35646 * 125.96600 * 359.97438 * 4 3 2 6 6 N 1.30861 * 108.06681 * 179.74000 * 4 3 2 7 7 N 1.40108 * 108.00887 * 0.26176 * 6 4 3 8 8 C 1.31138 * 107.94117 * 359.97438 * 7 6 4 9 9 S 1.76205 * 126.02325 * 180.02562 * 8 7 6 10 10 C 1.81400 * 102.99784 * 359.97410 * 9 8 7 11 11 C 1.50698 * 109.46887 * 179.97438 * 10 9 8 12 12 O 1.21297 * 120.00367 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00231 * 179.97438 * 11 10 9 14 14 C 1.37095 * 120.00408 * 180.02562 * 13 11 10 15 15 H 1.08005 * 119.99654 * 0.02562 * 14 13 11 16 16 C 1.38948 * 120.00244 * 180.02562 * 14 13 11 17 17 N 1.31408 * 120.00166 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00130 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47297 * 89.99387 * 18 16 14 20 20 H 1.48498 * 109.47009 * 209.99668 * 18 16 14 21 21 H 1.48504 * 109.47248 * 329.99839 * 18 16 14 22 22 H 1.08998 * 109.47135 * 299.99724 * 1 2 3 23 23 H 1.08997 * 109.46877 * 60.00148 * 1 2 3 24 24 H 1.09000 * 109.46644 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47135 * 240.00276 * 2 1 3 26 26 H 1.08998 * 109.47368 * 120.00050 * 2 1 3 27 27 H 0.96700 * 114.00407 * 269.72175 * 5 4 3 28 28 H 1.08990 * 109.47342 * 300.00218 * 10 9 8 29 29 H 1.08997 * 109.46577 * 60.00394 * 10 9 8 30 30 H 0.97003 * 119.99810 * 0.02562 * 13 11 10 31 31 H 0.97002 * 120.00569 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2862 2.1372 1.1045 5 8 2.1462 1.7409 2.3942 6 7 2.7063 3.3093 0.7019 7 7 2.7043 3.3124 -0.6992 8 6 2.2824 2.1390 -1.1051 9 16 2.0958 1.6278 -2.7810 10 6 2.6189 3.0922 -3.7150 11 6 2.5154 2.8096 -5.1916 12 8 2.1265 1.7270 -5.5761 13 7 2.8539 3.7602 -6.0850 14 6 2.7592 3.5034 -7.4284 15 1 2.4129 2.5393 -7.7707 16 6 3.1087 4.4832 -8.3494 17 7 3.5296 5.6564 -7.9329 18 14 2.9791 4.1335 -10.1798 19 1 1.6269 4.5135 -10.6618 20 1 4.0043 4.9228 -10.9084 21 1 3.2028 2.6859 -10.4242 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.2742 1.9246 2.7697 28 1 1.9760 3.9346 -3.4599 29 1 3.6515 3.3339 -3.4632 30 1 3.1645 4.6262 -5.7775 31 1 3.7733 6.3406 -8.5759 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342721016.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:30 Heat of formation + Delta-G solvation = 6.812344 kcal Electronic energy + Delta-G solvation = -17885.567980 eV Core-core repulsion = 14716.657176 eV Total energy + Delta-G solvation = -3168.910804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.073 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.07097 -38.25902 -37.79676 -35.36771 -34.12273 -31.48595 -30.51175 -30.36126 -29.20667 -24.73943 -24.13176 -22.92662 -22.08627 -19.66328 -18.67546 -18.16685 -17.60617 -16.75175 -16.03466 -15.89018 -14.99462 -14.61039 -14.58408 -14.52389 -14.23600 -13.55154 -13.22180 -12.82644 -12.60647 -12.58225 -12.14443 -11.80642 -11.61649 -11.26674 -11.13326 -10.92979 -10.46253 -10.35838 -10.25652 -10.20244 -9.99646 -9.65254 -8.71711 -8.13462 -7.61913 -6.53239 -3.95508 0.93485 1.53443 2.10311 2.25305 2.33153 3.10912 3.22112 3.27587 3.45954 3.67959 4.08434 4.25748 4.59184 4.74185 4.83590 4.99738 5.10190 5.11449 5.27138 5.31414 5.57089 5.69651 5.72610 5.78896 6.06513 6.17511 7.07548 7.44640 7.84425 7.88381 8.40895 9.01750 9.34912 9.82810 10.63500 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.043932 B = 0.003650 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.200208 B = 7669.771998 C = 8207.116838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.095 3.905 3 N -0.490 5.490 4 C 0.390 3.610 5 O -0.439 6.439 6 N -0.307 5.307 7 N -0.312 5.312 8 C 0.202 3.798 9 S 0.081 5.919 10 C -0.126 4.126 11 C 0.451 3.549 12 O -0.585 6.585 13 N -0.544 5.544 14 C -0.305 4.305 15 H 0.107 0.893 16 C 0.027 3.973 17 N -0.893 5.893 18 Si 0.934 3.066 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.268 1.268 22 H 0.057 0.943 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.407 0.593 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.397 0.603 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.426 -8.679 16.051 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.028 4.028 3 N -0.201 5.201 4 C 0.077 3.923 5 O -0.239 6.239 6 N -0.148 5.148 7 N -0.150 5.150 8 C -0.177 4.177 9 S 0.307 5.693 10 C -0.279 4.279 11 C 0.235 3.765 12 O -0.472 6.472 13 N -0.178 5.178 14 C -0.435 4.435 15 H 0.125 0.875 16 C -0.176 4.176 17 N -0.533 5.533 18 Si 0.760 3.240 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.192 1.192 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.101 0.899 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.264 0.736 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.231 0.769 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.841 -8.880 15.395 18.420 hybrid contribution -0.335 0.519 0.171 0.641 sum -5.176 -8.361 15.566 18.412 Atomic orbital electron populations 1.22160 0.93617 1.03712 1.03322 1.21984 0.96086 0.79208 1.05537 1.46729 1.54415 1.14822 1.04178 1.21744 1.00895 0.87865 0.81796 1.84920 1.39322 1.82494 1.17150 1.78079 1.20742 1.13236 1.02788 1.78470 1.22020 1.14756 0.99787 1.27106 1.01753 0.92043 0.96809 1.86106 1.81933 1.18799 0.82457 1.23729 1.06924 0.99389 0.97817 1.18798 0.86354 0.86487 0.84898 1.90559 1.52787 1.24294 1.79518 1.41740 1.56241 1.13917 1.05946 1.19756 1.42330 1.01262 0.80109 0.87514 1.25335 0.96416 0.94835 1.01035 1.69614 1.43307 1.04341 1.36042 0.85799 0.78071 0.78764 0.81335 1.20216 1.20777 1.19227 0.92368 0.90903 0.89929 0.87946 0.88319 0.73611 0.87060 0.87081 0.76944 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.24 37.16 0.38 -0.76 16 2 C 0.09 0.78 6.59 -4.04 -0.03 0.76 16 3 N -0.49 -6.06 2.77 -118.52 -0.33 -6.39 16 4 C 0.39 5.08 9.16 -88.73 -0.81 4.27 16 5 O -0.44 -3.98 13.58 -18.64 -0.25 -4.23 16 6 N -0.31 -5.14 12.71 29.68 0.38 -4.77 16 7 N -0.31 -5.52 12.30 30.66 0.38 -5.14 16 8 C 0.20 3.11 8.10 -88.43 -0.72 2.39 16 9 S 0.08 1.28 20.61 -107.50 -2.22 -0.93 16 10 C -0.13 -2.26 6.06 36.00 0.22 -2.04 16 11 C 0.45 10.29 7.80 -10.99 -0.09 10.20 16 12 O -0.59 -15.06 15.44 5.54 0.09 -14.97 16 13 N -0.54 -13.38 5.29 -10.96 -0.06 -13.44 16 14 C -0.31 -8.22 9.68 -14.93 -0.14 -8.36 16 15 H 0.11 2.99 7.16 -52.48 -0.38 2.61 16 16 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 17 N -0.89 -23.69 13.05 55.50 0.72 -22.96 16 18 Si 0.93 20.35 29.55 -169.99 -5.02 15.33 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.10 0.85 7.72 -51.93 -0.40 0.45 16 26 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.41 1.43 9.06 45.56 0.41 1.84 16 28 H 0.11 1.86 8.14 -51.93 -0.42 1.43 16 29 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 30 H 0.40 9.38 7.90 -40.82 -0.32 9.06 16 31 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 LS Contribution 298.74 15.07 4.50 4.50 Total: -1.00 -33.41 298.74 -5.45 -38.87 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -2.36 Total: 7.08 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -1.28 Total: 7.06 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 1.09 Total: -52.70 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.17 Total: -19.20 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.22 Total: -0.93 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.41 -5.45 -38.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342721016.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.678 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds