Wall clock time and date at job start Mon Mar 30 2020 01:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47085 * 2 1 4 4 C 1.36499 * 125.98449 * 90.02645 * 3 2 1 5 5 O 1.35646 * 125.96600 * 359.97438 * 4 3 2 6 6 N 1.30861 * 108.06681 * 179.74000 * 4 3 2 7 7 N 1.40108 * 108.00887 * 0.26176 * 6 4 3 8 8 C 1.31138 * 107.94117 * 359.97438 * 7 6 4 9 9 S 1.76205 * 126.02325 * 180.02562 * 8 7 6 10 10 C 1.81400 * 102.99784 * 359.97410 * 9 8 7 11 11 C 1.50698 * 109.46887 * 179.97438 * 10 9 8 12 12 O 1.21297 * 120.00367 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00231 * 179.97438 * 11 10 9 14 14 C 1.37095 * 120.00408 * 180.02562 * 13 11 10 15 15 H 1.08005 * 119.99654 * 0.02562 * 14 13 11 16 16 C 1.38948 * 120.00244 * 180.02562 * 14 13 11 17 17 N 1.31408 * 120.00166 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00130 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47297 * 89.99387 * 18 16 14 20 20 H 1.48498 * 109.47009 * 209.99668 * 18 16 14 21 21 H 1.48504 * 109.47248 * 329.99839 * 18 16 14 22 22 H 1.08998 * 109.47135 * 299.99724 * 1 2 3 23 23 H 1.08997 * 109.46877 * 60.00148 * 1 2 3 24 24 H 1.09000 * 109.46644 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47135 * 240.00276 * 2 1 3 26 26 H 1.08998 * 109.47368 * 120.00050 * 2 1 3 27 27 H 0.96700 * 114.00407 * 269.72175 * 5 4 3 28 28 H 1.08990 * 109.47342 * 300.00218 * 10 9 8 29 29 H 1.08997 * 109.46577 * 60.00394 * 10 9 8 30 30 H 0.97003 * 119.99810 * 0.02562 * 13 11 10 31 31 H 0.97002 * 120.00569 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2862 2.1372 1.1045 5 8 2.1462 1.7409 2.3942 6 7 2.7063 3.3093 0.7019 7 7 2.7043 3.3124 -0.6992 8 6 2.2824 2.1390 -1.1051 9 16 2.0958 1.6278 -2.7810 10 6 2.6189 3.0922 -3.7150 11 6 2.5154 2.8096 -5.1916 12 8 2.1265 1.7270 -5.5761 13 7 2.8539 3.7602 -6.0850 14 6 2.7592 3.5034 -7.4284 15 1 2.4129 2.5393 -7.7707 16 6 3.1087 4.4832 -8.3494 17 7 3.5296 5.6564 -7.9329 18 14 2.9791 4.1335 -10.1798 19 1 1.6269 4.5135 -10.6618 20 1 4.0043 4.9228 -10.9084 21 1 3.2028 2.6859 -10.4242 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.2742 1.9246 2.7697 28 1 1.9760 3.9346 -3.4599 29 1 3.6515 3.3339 -3.4632 30 1 3.1645 4.6262 -5.7775 31 1 3.7733 6.3406 -8.5759 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342721016.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:29 Heat of formation + Delta-G solvation = -20.099431 kcal Electronic energy + Delta-G solvation = -17886.734962 eV Core-core repulsion = 14716.657176 eV Total energy + Delta-G solvation = -3170.077786 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.073 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.12462 -40.15590 -38.61663 -36.23672 -36.08247 -33.43747 -31.66152 -31.23873 -30.73820 -26.68875 -24.90192 -24.02070 -23.06243 -21.43809 -20.06960 -19.52545 -18.76562 -17.89886 -17.72074 -16.90076 -16.51653 -16.33084 -15.97460 -15.68777 -15.20447 -14.93985 -14.46124 -14.01992 -13.76408 -13.72167 -13.46757 -13.27471 -12.90128 -12.46969 -12.45090 -12.32032 -12.10523 -11.91101 -11.56762 -11.54542 -11.33702 -10.99368 -10.63226 -10.10871 -8.87797 -8.50825 -6.01295 -0.31419 0.52553 0.91499 1.04811 1.28140 1.37104 1.44656 1.57505 1.87953 2.28696 2.62323 3.01148 3.15458 3.49010 3.99832 4.04369 4.07363 4.11669 4.16260 4.32450 4.38307 4.51801 4.77691 4.96900 5.19087 5.38850 5.42987 5.89553 6.36223 6.45765 6.74227 7.02681 7.41076 7.92107 8.66052 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.043932 B = 0.003650 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.200208 B = 7669.771998 C = 8207.116838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.086 3.914 3 N -0.483 5.483 4 C 0.412 3.588 5 O -0.431 6.431 6 N -0.353 5.353 7 N -0.346 5.346 8 C 0.198 3.802 9 S 0.095 5.905 10 C -0.122 4.122 11 C 0.455 3.545 12 O -0.615 6.615 13 N -0.555 5.555 14 C -0.337 4.337 15 H 0.088 0.912 16 C -0.009 4.009 17 N -0.916 5.916 18 Si 0.997 3.003 19 H -0.269 1.269 20 H -0.272 1.272 21 H -0.269 1.269 22 H 0.069 0.931 23 H 0.051 0.949 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.125 0.875 27 H 0.434 0.566 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.399 0.601 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.980 -9.705 17.126 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.035 4.035 3 N -0.194 5.194 4 C 0.099 3.901 5 O -0.235 6.235 6 N -0.195 5.195 7 N -0.185 5.185 8 C -0.183 4.183 9 S 0.321 5.679 10 C -0.274 4.274 11 C 0.241 3.759 12 O -0.503 6.503 13 N -0.190 5.190 14 C -0.466 4.466 15 H 0.106 0.894 16 C -0.210 4.210 17 N -0.556 5.556 18 Si 0.820 3.180 19 H -0.195 1.195 20 H -0.197 1.197 21 H -0.193 1.193 22 H 0.088 0.912 23 H 0.070 0.930 24 H 0.125 0.875 25 H 0.120 0.880 26 H 0.143 0.857 27 H 0.296 0.704 28 H 0.142 0.858 29 H 0.140 0.860 30 H 0.234 0.766 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.424 -9.914 16.516 20.012 hybrid contribution -0.206 0.731 0.031 0.760 sum -5.631 -9.183 16.546 19.744 Atomic orbital electron populations 1.22156 0.92235 1.05135 1.02835 1.22378 0.97215 0.77080 1.06828 1.46923 1.53495 1.15911 1.03030 1.21738 0.98433 0.86937 0.83042 1.84906 1.41635 1.82048 1.14908 1.77980 1.23540 1.15646 1.02374 1.78356 1.23177 1.16132 1.00797 1.26889 1.02064 0.92260 0.97044 1.85990 1.82082 1.17067 0.82735 1.23508 1.08151 1.01136 0.94626 1.19463 0.84335 0.85465 0.86677 1.90533 1.53582 1.25442 1.80770 1.41798 1.57004 1.14451 1.05757 1.19771 1.44124 1.01138 0.81598 0.89361 1.26134 0.95488 0.94401 1.04962 1.69681 1.43461 1.04907 1.37507 0.84864 0.78432 0.78508 0.76179 1.19481 1.19704 1.19317 0.91242 0.92989 0.87534 0.88032 0.85685 0.70401 0.85771 0.85967 0.76640 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 10.24 71.98 0.74 -1.03 16 2 C 0.09 1.19 6.59 86.38 0.57 1.76 16 3 N -0.48 -11.03 2.77 -639.53 -1.77 -12.80 16 4 C 0.41 9.91 9.16 179.69 1.65 11.56 16 5 O -0.43 -6.45 13.58 -89.60 -1.22 -7.67 16 6 N -0.35 -11.57 12.71 -173.60 -2.21 -13.77 16 7 N -0.35 -12.12 12.30 -56.91 -0.70 -12.82 16 8 C 0.20 5.92 8.10 179.58 1.45 7.37 16 9 S 0.10 2.98 20.61 -56.49 -1.16 1.81 16 10 C -0.12 -4.37 6.06 71.24 0.43 -3.94 16 11 C 0.46 21.04 7.80 87.66 0.68 21.73 16 12 O -0.62 -32.12 15.44 -3.08 -0.05 -32.17 16 13 N -0.55 -27.86 5.29 -306.98 -1.62 -29.48 16 14 C -0.34 -18.50 9.68 84.04 0.81 -17.69 16 15 H 0.09 5.08 7.16 -2.91 -0.02 5.06 16 16 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 17 N -0.92 -48.60 13.05 21.66 0.28 -48.32 16 18 Si 1.00 41.54 29.55 68.60 2.03 43.57 16 19 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 22 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 23 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.11 0.65 8.14 -2.39 -0.02 0.64 16 25 H 0.10 1.46 7.72 -2.39 -0.02 1.44 16 26 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.43 1.44 9.06 -74.06 -0.67 0.77 16 28 H 0.12 4.13 8.14 -2.40 -0.02 4.11 16 29 H 0.12 4.11 8.14 -2.39 -0.02 4.09 16 30 H 0.40 19.29 7.90 -92.71 -0.73 18.55 16 31 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -72.53 298.74 0.18 -72.36 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -0.21 Total: 19.52 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 6.80 Total: 19.76 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -6.02 Total: -117.19 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -1.26 Total: -39.83 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -1.16 Total: 1.81 kcal Total: -72.53 0.18 -72.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342721016.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.259 kcal (2) G-P(sol) polarization free energy of solvation -72.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds