Wall clock time and date at job start Mon Mar 30 2020 01:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35911 * 117.00027 * 2 1 4 4 C 1.38753 * 120.47335 * 359.97438 * 3 2 1 5 5 N 1.31809 * 120.68086 * 180.02562 * 4 3 2 6 6 C 1.31877 * 121.78038 * 359.73549 * 5 4 3 7 7 C 1.38208 * 120.88862 * 0.53313 * 6 5 4 8 8 S 1.76199 * 120.38933 * 179.75195 * 7 6 5 9 9 O 1.42097 * 106.40354 * 23.26250 * 8 7 6 10 10 O 1.42107 * 106.40384 * 156.18452 * 8 7 6 11 11 N 1.65607 * 107.21942 * 269.72228 * 8 7 6 12 12 C 1.46498 * 119.99651 * 65.00149 * 11 8 7 13 13 C 1.50706 * 109.46835 * 165.00079 * 12 11 8 14 14 H 1.07998 * 119.99980 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99640 * 179.97438 * 13 12 11 16 16 N 1.31506 * 120.00004 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99432 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47636 * 59.99976 * 17 15 13 19 19 H 1.48505 * 109.46859 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47308 * 299.99833 * 17 15 13 21 21 C 1.38578 * 119.22120 * 359.47656 * 7 6 5 22 22 H 1.08996 * 109.47076 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46921 * 300.00072 * 1 2 3 24 24 H 1.08996 * 109.47060 * 59.99633 * 1 2 3 25 25 H 1.07996 * 119.65826 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.55877 * 180.26505 * 6 5 4 27 27 H 0.96995 * 119.99966 * 245.00186 * 11 8 7 28 28 H 1.08998 * 109.46903 * 284.99521 * 12 11 8 29 29 H 1.08992 * 109.47457 * 44.99877 * 12 11 8 30 30 H 0.97008 * 119.99915 * 179.97438 * 16 15 13 31 31 H 1.08004 * 120.80899 * 180.22817 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.3000 2.3809 -0.0005 5 7 1.8941 3.5574 -0.0010 6 6 3.2079 3.6721 0.0041 7 6 4.0179 2.5523 -0.0007 8 16 5.7718 2.7208 -0.0003 9 8 6.0516 4.0035 0.5434 10 8 6.2907 1.5154 0.5450 11 7 6.2603 2.7667 -1.5821 12 6 5.8566 3.8825 -2.4412 13 6 6.7059 3.8908 -3.6861 14 1 7.4702 3.1402 -3.8233 15 6 6.5071 4.8566 -4.6498 16 7 5.5761 5.7703 -4.4829 17 14 7.5594 4.8664 -6.1931 18 1 7.3773 3.5869 -6.9246 19 1 7.1503 5.9976 -7.0640 20 1 8.9876 5.0229 -5.8176 21 6 3.4344 1.2953 -0.0001 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8899 25 1 0.2214 2.3268 -0.0005 26 1 3.6570 4.6543 0.0078 27 1 6.8136 2.0548 -1.9396 28 1 4.8084 3.7677 -2.7173 29 1 5.9901 4.8215 -1.9040 30 1 5.4365 6.4500 -5.1607 31 1 4.0429 0.4030 -0.0001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346296231.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:50 Heat of formation + Delta-G solvation = -75.156070 kcal Electronic energy + Delta-G solvation = -18640.672898 eV Core-core repulsion = 15435.914926 eV Total energy + Delta-G solvation = -3204.757972 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.72560 -38.25574 -36.82125 -35.44903 -34.69577 -32.69753 -32.19457 -30.67070 -27.79664 -26.78852 -24.01106 -23.36415 -22.53721 -19.42854 -18.40116 -17.54027 -17.25549 -16.78604 -16.29421 -16.11420 -15.85329 -15.34437 -14.65648 -14.35661 -13.80982 -13.54355 -13.28760 -12.97713 -12.64192 -12.21529 -12.14986 -11.88022 -11.77133 -11.70087 -11.59002 -11.28948 -10.94326 -10.80045 -10.24464 -10.09931 -9.57546 -9.49117 -8.95024 -8.68285 -8.29027 -6.20209 -4.25512 0.49141 0.88781 1.14722 2.91228 3.25744 3.30519 3.31891 3.39539 3.67509 4.14376 4.29957 4.32518 4.39949 4.68888 4.72917 4.84413 4.91154 4.99914 5.16511 5.17810 5.41082 5.72218 5.79350 6.21734 6.35784 6.95270 7.22063 7.28021 7.71849 7.72579 7.76811 8.12559 8.78093 9.39723 10.90019 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.020516 B = 0.005478 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.453752 B = 5110.578667 C = 5677.971404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.309 6.309 3 C 0.049 3.951 4 C 0.066 3.934 5 N -0.461 5.461 6 C 0.169 3.831 7 C -0.687 4.687 8 S 2.697 3.303 9 O -0.953 6.953 10 O -0.974 6.974 11 N -1.099 6.099 12 C 0.244 3.756 13 C -0.532 4.532 14 H 0.066 0.934 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.904 3.096 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.005 4.005 22 H 0.104 0.896 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.163 0.837 26 H 0.179 0.821 27 H 0.413 0.587 28 H 0.021 0.979 29 H 0.042 0.958 30 H 0.267 0.733 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.334 -9.239 7.738 15.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.001 3.999 4 C -0.093 4.093 5 N -0.170 5.170 6 C 0.011 3.989 7 C -0.772 4.772 8 S 2.781 3.219 9 O -0.943 6.943 10 O -0.964 6.964 11 N -0.862 5.862 12 C 0.121 3.879 13 C -0.572 4.572 14 H 0.084 0.916 15 C -0.141 4.141 16 N -0.527 5.527 17 Si 0.732 3.268 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.032 4.032 22 H 0.122 0.878 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.180 0.820 26 H 0.196 0.804 27 H 0.247 0.753 28 H 0.039 0.961 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.514 -8.317 8.459 15.207 hybrid contribution 0.097 -0.925 -1.441 1.715 sum -9.417 -9.242 7.018 14.945 Atomic orbital electron populations 1.23143 0.78014 1.04485 1.01602 1.86100 1.21610 1.25562 1.88892 1.19999 0.93318 0.86021 1.00518 1.23232 1.00756 0.87460 0.97815 1.67697 1.12098 1.26012 1.11207 1.22597 0.88506 0.98278 0.89538 1.32285 1.30243 0.99253 1.15432 1.01905 0.72892 0.73577 0.73513 1.93587 1.82374 1.41024 1.77310 1.93541 1.77581 1.47487 1.77744 1.55447 1.64990 1.35535 1.30230 1.19137 0.95785 0.83116 0.89857 1.21135 1.19132 1.14134 1.02764 0.91557 1.24969 0.95459 0.95053 0.98645 1.69923 1.31813 1.15635 1.35326 0.86459 0.80580 0.77658 0.82141 1.20114 1.21101 1.19958 1.20581 0.92156 0.97276 0.93200 0.87757 0.92420 0.92253 0.81996 0.80397 0.75259 0.96103 0.94045 0.92326 0.82371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.82 101.05 0.99 1.15 16 2 O -0.31 -3.64 10.51 -19.46 -0.20 -3.84 16 3 C 0.05 0.68 6.71 -39.07 -0.26 0.42 16 4 C 0.07 0.88 10.22 -17.37 -0.18 0.70 16 5 N -0.46 -7.44 10.36 -13.13 -0.14 -7.57 16 6 C 0.17 2.87 10.68 -17.54 -0.19 2.68 16 7 C -0.69 -11.40 5.96 -39.47 -0.24 -11.64 16 8 S 2.70 48.47 5.75 -107.50 -0.62 47.85 16 9 O -0.95 -19.58 16.77 -57.17 -0.96 -20.54 16 10 O -0.97 -18.10 17.36 -57.17 -0.99 -19.10 16 11 N -1.10 -21.43 5.99 -11.66 -0.07 -21.50 16 12 C 0.24 5.87 5.98 -5.19 -0.03 5.84 16 13 C -0.53 -13.98 9.27 -34.44 -0.32 -14.30 16 14 H 0.07 1.65 7.65 -52.49 -0.40 1.25 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 17 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 C 0.00 -0.07 9.60 -39.14 -0.38 -0.45 16 22 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.34 7.68 -51.93 -0.40 -0.06 16 24 H 0.06 0.38 7.68 -51.93 -0.40 -0.02 16 25 H 0.16 1.56 6.32 -52.49 -0.33 1.22 16 26 H 0.18 2.92 7.62 -52.49 -0.40 2.52 16 27 H 0.41 7.28 8.54 -34.47 -0.29 6.99 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 1.07 7.75 -51.93 -0.40 0.66 16 30 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.16 2.13 7.71 -52.48 -0.40 1.73 16 LS Contribution 290.11 15.07 4.37 4.37 Total: -1.00 -32.84 290.11 -6.60 -39.43 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -3.01 Total: 3.72 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -0.69 Total: -14.01 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.53 Total: -53.42 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -2.16 Total: -43.48 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 48.47 SS G_CDS: -0.62 Total: 47.85 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.84 -6.60 -39.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346296231.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.723 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds