Wall clock time and date at job start Mon Mar 30 2020 01:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35911 * 117.00027 * 2 1 4 4 C 1.38753 * 120.47335 * 359.97438 * 3 2 1 5 5 N 1.31809 * 120.68086 * 180.02562 * 4 3 2 6 6 C 1.31877 * 121.78038 * 359.73549 * 5 4 3 7 7 C 1.38208 * 120.88862 * 0.53313 * 6 5 4 8 8 S 1.76199 * 120.38933 * 179.75195 * 7 6 5 9 9 O 1.42097 * 106.40354 * 23.26250 * 8 7 6 10 10 O 1.42107 * 106.40384 * 156.18452 * 8 7 6 11 11 N 1.65607 * 107.21942 * 269.72228 * 8 7 6 12 12 C 1.46498 * 119.99651 * 65.00149 * 11 8 7 13 13 C 1.50706 * 109.46835 * 165.00079 * 12 11 8 14 14 H 1.07998 * 119.99980 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99640 * 179.97438 * 13 12 11 16 16 N 1.31506 * 120.00004 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99432 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47636 * 59.99976 * 17 15 13 19 19 H 1.48505 * 109.46859 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47308 * 299.99833 * 17 15 13 21 21 C 1.38578 * 119.22120 * 359.47656 * 7 6 5 22 22 H 1.08996 * 109.47076 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46921 * 300.00072 * 1 2 3 24 24 H 1.08996 * 109.47060 * 59.99633 * 1 2 3 25 25 H 1.07996 * 119.65826 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.55877 * 180.26505 * 6 5 4 27 27 H 0.96995 * 119.99966 * 245.00186 * 11 8 7 28 28 H 1.08998 * 109.46903 * 284.99521 * 12 11 8 29 29 H 1.08992 * 109.47457 * 44.99877 * 12 11 8 30 30 H 0.97008 * 119.99915 * 179.97438 * 16 15 13 31 31 H 1.08004 * 120.80899 * 180.22817 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.3000 2.3809 -0.0005 5 7 1.8941 3.5574 -0.0010 6 6 3.2079 3.6721 0.0041 7 6 4.0179 2.5523 -0.0007 8 16 5.7718 2.7208 -0.0003 9 8 6.0516 4.0035 0.5434 10 8 6.2907 1.5154 0.5450 11 7 6.2603 2.7667 -1.5821 12 6 5.8566 3.8825 -2.4412 13 6 6.7059 3.8908 -3.6861 14 1 7.4702 3.1402 -3.8233 15 6 6.5071 4.8566 -4.6498 16 7 5.5761 5.7703 -4.4829 17 14 7.5594 4.8664 -6.1931 18 1 7.3773 3.5869 -6.9246 19 1 7.1503 5.9976 -7.0640 20 1 8.9876 5.0229 -5.8176 21 6 3.4344 1.2953 -0.0001 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8899 25 1 0.2214 2.3268 -0.0005 26 1 3.6570 4.6543 0.0078 27 1 6.8136 2.0548 -1.9396 28 1 4.8084 3.7677 -2.7173 29 1 5.9901 4.8215 -1.9040 30 1 5.4365 6.4500 -5.1607 31 1 4.0429 0.4030 -0.0001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346296231.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:50 Heat of formation + Delta-G solvation = -101.760146 kcal Electronic energy + Delta-G solvation = -18641.826538 eV Core-core repulsion = 15435.914926 eV Total energy + Delta-G solvation = -3205.911611 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.80848 -39.24545 -38.36114 -37.00582 -36.50517 -34.14942 -33.87380 -31.77551 -28.74550 -28.49890 -25.17147 -24.53773 -24.44424 -20.77803 -19.73271 -19.14000 -18.40797 -17.99489 -17.78931 -17.40944 -17.01782 -16.91994 -16.33290 -15.39449 -15.17765 -14.90785 -14.56843 -14.42274 -14.10543 -13.99658 -13.61069 -13.28028 -13.16863 -12.99754 -12.72841 -12.59798 -12.52322 -12.51408 -12.08928 -11.45412 -11.40814 -10.90635 -10.70677 -10.14369 -9.73776 -8.24006 -6.36395 -0.77875 -0.51010 -0.02604 1.46432 1.48785 1.56533 1.95423 2.08526 2.34914 2.43553 2.70795 3.11031 3.17454 3.31143 3.43336 3.71686 3.78122 4.11711 4.32775 4.36903 4.57338 4.59919 4.63518 4.74022 5.07706 5.25677 5.30176 5.74471 5.96442 6.04013 6.29793 6.54358 6.77475 7.33445 8.86834 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.020516 B = 0.005478 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.453752 B = 5110.578667 C = 5677.971404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.317 6.317 3 C 0.060 3.940 4 C 0.070 3.930 5 N -0.476 5.476 6 C 0.148 3.852 7 C -0.692 4.692 8 S 2.719 3.281 9 O -0.983 6.983 10 O -0.977 6.977 11 N -1.098 6.098 12 C 0.256 3.744 13 C -0.551 4.551 14 H 0.077 0.923 15 C 0.009 3.991 16 N -0.926 5.926 17 Si 0.972 3.028 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.268 1.268 21 C -0.020 4.020 22 H 0.129 0.871 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.204 0.796 26 H 0.171 0.829 27 H 0.421 0.579 28 H 0.010 0.990 29 H 0.018 0.982 30 H 0.269 0.731 31 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.322 -10.854 7.322 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.229 6.229 3 C 0.011 3.989 4 C -0.088 4.088 5 N -0.186 5.186 6 C -0.010 4.010 7 C -0.780 4.780 8 S 2.807 3.193 9 O -0.973 6.973 10 O -0.967 6.967 11 N -0.860 5.860 12 C 0.132 3.868 13 C -0.590 4.590 14 H 0.095 0.905 15 C -0.191 4.191 16 N -0.565 5.565 17 Si 0.797 3.203 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.193 1.193 21 C -0.047 4.047 22 H 0.147 0.853 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.220 0.780 26 H 0.188 0.812 27 H 0.257 0.743 28 H 0.028 0.972 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.461 -9.959 8.050 16.535 hybrid contribution 0.219 -0.550 -1.231 1.366 sum -10.242 -10.509 6.819 16.182 Atomic orbital electron populations 1.23577 0.75338 1.06704 1.02980 1.86115 1.24297 1.24278 1.88243 1.20007 0.92908 0.87029 0.98964 1.23877 1.02579 0.86482 0.95880 1.67719 1.11512 1.27555 1.11820 1.22572 0.89306 0.98218 0.90895 1.31828 1.28590 1.00152 1.17413 1.01001 0.73170 0.72663 0.72453 1.93545 1.83472 1.42582 1.77678 1.93528 1.78319 1.47380 1.77448 1.55245 1.65788 1.34800 1.30212 1.18719 0.94967 0.83468 0.89667 1.21598 1.19514 1.14387 1.03532 0.90526 1.25882 0.96635 0.94639 1.01953 1.70049 1.33482 1.16420 1.36506 0.85389 0.78864 0.77939 0.78149 1.19005 1.20965 1.19296 1.20813 0.93481 0.96956 0.93421 0.85328 0.90688 0.91128 0.77994 0.81212 0.74287 0.97250 0.96430 0.92253 0.81087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.82 113.37 1.11 1.19 16 2 O -0.32 -6.52 10.51 -92.55 -0.97 -7.50 16 3 C 0.06 1.51 6.71 22.60 0.15 1.67 16 4 C 0.07 1.73 10.22 84.82 0.87 2.59 16 5 N -0.48 -15.06 10.36 -195.44 -2.02 -17.08 16 6 C 0.15 5.13 10.68 84.68 0.90 6.03 16 7 C -0.69 -23.08 5.96 22.34 0.13 -22.95 16 8 S 2.72 99.26 5.75 -56.49 -0.32 98.93 16 9 O -0.98 -41.70 16.77 -128.00 -2.15 -43.85 16 10 O -0.98 -35.96 17.36 -128.00 -2.22 -38.18 16 11 N -1.10 -43.41 5.99 -190.80 -1.14 -44.55 16 12 C 0.26 12.66 5.98 85.64 0.51 13.17 16 13 C -0.55 -29.10 9.27 25.60 0.24 -28.86 16 14 H 0.08 3.78 7.65 -2.91 -0.02 3.76 16 15 C 0.01 0.49 5.46 84.66 0.46 0.95 16 16 N -0.93 -53.02 13.29 21.45 0.28 -52.73 16 17 Si 0.97 41.84 29.54 68.60 2.03 43.87 16 18 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 21 C -0.02 -0.57 9.60 22.56 0.22 -0.35 16 22 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 23 H 0.07 0.56 7.68 -2.39 -0.02 0.54 16 24 H 0.07 0.62 7.68 -2.39 -0.02 0.60 16 25 H 0.20 3.12 6.32 -2.91 -0.02 3.11 16 26 H 0.17 5.94 7.62 -2.91 -0.02 5.91 16 27 H 0.42 14.84 8.54 -96.75 -0.83 14.01 16 28 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.02 0.95 7.75 -2.39 -0.02 0.93 16 30 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 31 H 0.17 4.40 7.71 -2.91 -0.02 4.38 16 Total: -1.00 -69.92 290.11 -1.58 -71.50 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.35 Total: 16.15 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 4.60 Total: -26.57 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -2.88 Total: -114.36 kcal Atomic # 8 Polarization: -84.18 SS G_CDS: -5.34 Total: -89.52 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: 99.26 SS G_CDS: -0.32 Total: 98.93 kcal Total: -69.92 -1.58 -71.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346296231.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.262 kcal (2) G-P(sol) polarization free energy of solvation -69.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds