Wall clock time and date at job start Mon Mar 30 2020 01:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46696 * 2 1 4 4 H 1.09002 * 109.47089 * 54.42494 * 3 2 1 5 5 S 1.81397 * 109.47399 * 294.42319 * 3 2 1 6 6 C 1.81404 * 103.00030 * 172.51505 * 5 3 2 7 7 C 1.50696 * 109.47140 * 175.06924 * 6 5 3 8 8 H 1.08006 * 120.00183 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00086 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00127 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00177 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47014 * 59.99902 * 11 9 7 13 13 H 1.48503 * 109.47159 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47033 * 299.99724 * 11 9 7 15 15 C 1.50706 * 109.46728 * 174.42092 * 3 2 1 16 16 C 1.38229 * 119.98603 * 94.72606 * 15 3 2 17 17 C 1.38187 * 120.04933 * 179.76150 * 16 15 3 18 18 C 1.38490 * 120.02408 * 0.51493 * 17 16 15 19 19 F 1.35098 * 120.01548 * 179.76339 * 18 17 16 20 20 C 1.38398 * 119.97457 * 359.74044 * 18 17 16 21 21 C 1.38436 * 119.95252 * 0.02562 * 20 18 17 22 22 F 1.35096 * 120.01393 * 180.02562 * 21 20 18 23 23 H 1.08998 * 109.46841 * 295.26528 * 1 2 3 24 24 H 1.08998 * 109.47470 * 55.26599 * 1 2 3 25 25 H 1.08999 * 109.46935 * 175.27094 * 1 2 3 26 26 H 1.09002 * 109.46934 * 240.00913 * 2 1 3 27 27 H 1.08996 * 109.47645 * 120.00335 * 2 1 3 28 28 H 1.08998 * 109.47150 * 55.06679 * 6 5 3 29 29 H 1.08998 * 109.46569 * 295.06461 * 6 5 3 30 30 H 0.97001 * 120.00728 * 180.02562 * 10 9 7 31 31 H 1.08004 * 119.97459 * 0.02562 * 16 15 3 32 32 H 1.07999 * 119.98507 * 180.25465 * 17 16 15 33 33 H 1.08008 * 120.02646 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5973 1.9844 0.8359 5 16 1.5748 2.2484 -1.5572 6 6 2.0508 3.9768 -1.2803 7 6 1.8354 4.7661 -2.5458 8 1 1.4509 4.2768 -3.4286 9 6 2.1290 6.1128 -2.5768 10 7 2.5967 6.7088 -1.5018 11 14 1.8626 7.0911 -4.1458 12 1 0.4300 7.0273 -4.5316 13 1 2.2511 8.5063 -3.9187 14 1 2.6944 6.5175 -5.2339 15 6 3.5406 1.4448 0.1381 16 6 4.3381 1.5058 -0.9893 17 6 5.7142 1.5129 -0.8639 18 6 6.2960 1.4482 0.3912 19 9 7.6415 1.4503 0.5133 20 6 5.4986 1.3818 1.5204 21 6 4.1201 1.3796 1.3939 22 9 3.3405 1.3153 2.4953 23 1 -0.3633 0.4386 0.9294 24 1 -0.3634 0.5855 -0.8445 25 1 -0.3633 -1.0242 -0.0847 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.1025 4.0232 -0.9978 29 1 1.4409 4.3980 -0.4812 30 1 2.8030 7.6564 -1.5234 31 1 3.8852 1.5522 -1.9687 32 1 6.3363 1.5647 -1.7452 33 1 5.9515 1.3317 2.4997 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413014049.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:45 Heat of formation + Delta-G solvation = -88.442449 kcal Electronic energy + Delta-G solvation = -18411.026242 eV Core-core repulsion = 15198.144958 eV Total energy + Delta-G solvation = -3212.881285 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.074 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.91633 -48.88618 -38.90140 -34.91924 -33.18107 -31.01533 -30.45778 -28.51067 -26.18246 -23.28832 -23.00849 -22.23699 -20.92623 -18.12941 -17.24070 -16.52181 -16.05510 -15.87097 -15.49416 -15.23872 -15.19307 -14.87855 -14.32262 -14.06860 -13.87950 -13.26536 -12.89447 -12.42338 -12.38892 -12.31568 -12.07137 -11.70798 -11.36318 -11.22844 -11.03533 -10.88833 -10.85979 -10.65704 -9.89163 -9.58345 -8.94263 -8.90320 -8.63664 -8.44891 -6.76272 -6.21283 -4.26561 1.05263 1.16424 2.46626 3.25697 3.29667 3.32824 3.49031 3.77247 3.97253 4.32903 4.52138 4.62581 4.76626 4.99307 5.11631 5.15599 5.25864 5.36395 5.50912 5.75568 5.88584 5.94074 5.98242 6.05255 6.11256 6.28039 6.30076 6.46877 6.53062 6.89914 7.06660 7.10472 7.71513 7.97594 8.74998 9.36855 10.89593 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.006480 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.269725 B = 4319.925871 C = 5468.717405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.093 4.093 3 C -0.024 4.024 4 H 0.092 0.908 5 S -0.278 6.278 6 C 0.088 3.912 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.067 3.933 10 N -0.890 5.890 11 Si 0.905 3.095 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.274 1.274 15 C -0.118 4.118 16 C -0.042 4.042 17 C -0.160 4.160 18 C 0.121 3.879 19 F -0.137 7.137 20 C -0.197 4.197 21 C 0.132 3.868 22 F -0.132 7.132 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.037 0.963 29 H 0.034 0.966 30 H 0.266 0.734 31 H 0.165 0.835 32 H 0.142 0.858 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.449 -12.381 4.404 13.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.131 4.131 3 C -0.153 4.153 4 H 0.110 0.890 5 S -0.048 6.048 6 C -0.059 4.059 7 C -0.554 4.554 8 H 0.085 0.915 9 C -0.137 4.137 10 N -0.528 5.528 11 Si 0.732 3.268 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.199 1.199 15 C -0.121 4.121 16 C -0.061 4.061 17 C -0.179 4.179 18 C 0.101 3.899 19 F -0.115 7.115 20 C -0.217 4.217 21 C 0.111 3.889 22 F -0.110 7.110 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.183 0.817 32 H 0.160 0.840 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.017 -12.659 3.620 13.507 hybrid contribution 0.688 1.349 0.738 1.684 sum 3.706 -11.310 4.358 12.674 Atomic orbital electron populations 1.21848 0.94752 1.01485 1.03058 1.21300 0.96775 0.92846 1.02222 1.22038 0.91774 1.00087 1.01405 0.88998 1.86507 1.83199 1.14079 1.21017 1.21106 0.99200 0.84703 1.00855 1.20618 1.45118 0.93304 0.96373 0.91512 1.24955 0.94637 0.97254 0.96893 1.69945 1.43327 1.11375 1.28177 0.86439 0.78923 0.78685 0.82767 1.19913 1.21073 1.19896 1.20137 0.96640 1.03613 0.91746 1.21408 0.91699 0.92701 1.00264 1.21254 0.95989 1.04413 0.96243 1.17326 0.76841 1.01859 0.93853 1.91499 1.29318 1.93851 1.96865 1.20868 0.92211 1.09023 0.99580 1.17118 0.87608 1.01726 0.82458 1.91492 1.74388 1.93521 1.51632 0.92890 0.90684 0.92938 0.91092 0.91617 0.94444 0.94738 0.92423 0.81744 0.84014 0.83837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.82 37.16 0.36 -1.61 16 2 C -0.09 -1.27 5.38 -26.73 -0.14 -1.41 16 3 C -0.02 -0.40 2.20 -27.88 -0.06 -0.46 16 4 H 0.09 1.62 7.79 -51.92 -0.40 1.21 16 5 S -0.28 -5.56 17.75 -107.50 -1.91 -7.47 16 6 C 0.09 2.21 5.53 36.00 0.20 2.41 16 7 C -0.51 -14.05 9.13 -34.44 -0.31 -14.37 16 8 H 0.07 1.81 7.71 -52.48 -0.40 1.40 16 9 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 10 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 11 Si 0.91 21.02 29.54 -169.99 -5.02 16.00 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 13 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 C -0.12 -1.92 4.68 -104.54 -0.49 -2.41 16 16 C -0.04 -0.66 8.65 -39.60 -0.34 -1.01 16 17 C -0.16 -2.29 10.02 -39.51 -0.40 -2.68 16 18 C 0.12 1.73 7.30 -39.43 -0.29 1.44 16 19 F -0.14 -1.92 17.27 2.25 0.04 -1.88 16 20 C -0.20 -2.77 10.01 -39.45 -0.39 -3.17 16 21 C 0.13 2.03 7.24 -39.43 -0.29 1.75 16 22 F -0.13 -2.03 16.57 2.25 0.04 -1.99 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 1.08 7.01 -51.93 -0.36 0.72 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.99 7.55 -51.93 -0.39 0.59 16 29 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.17 2.68 6.49 -52.48 -0.34 2.34 16 32 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 302.83 15.07 4.56 4.56 Total: -1.00 -27.96 302.83 -7.80 -35.76 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -4.00 Total: -0.28 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -2.25 Total: -19.79 kcal Atomic # 7 Polarization: -25.65 SS G_CDS: 0.74 Total: -24.91 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.08 Total: -3.87 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -5.56 SS G_CDS: -1.91 Total: -7.47 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.96 -7.80 -35.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014049.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.678 kcal (2) G-P(sol) polarization free energy of solvation -27.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds