Wall clock time and date at job start Mon Mar 30 2020 01:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46696 * 2 1 4 4 H 1.09002 * 109.47089 * 54.42494 * 3 2 1 5 5 S 1.81397 * 109.47399 * 294.42319 * 3 2 1 6 6 C 1.81404 * 103.00030 * 172.51505 * 5 3 2 7 7 C 1.50696 * 109.47140 * 175.06924 * 6 5 3 8 8 H 1.08006 * 120.00183 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00086 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00127 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00177 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47014 * 59.99902 * 11 9 7 13 13 H 1.48503 * 109.47159 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47033 * 299.99724 * 11 9 7 15 15 C 1.50706 * 109.46728 * 174.42092 * 3 2 1 16 16 C 1.38229 * 119.98603 * 94.72606 * 15 3 2 17 17 C 1.38187 * 120.04933 * 179.76150 * 16 15 3 18 18 C 1.38490 * 120.02408 * 0.51493 * 17 16 15 19 19 F 1.35098 * 120.01548 * 179.76339 * 18 17 16 20 20 C 1.38398 * 119.97457 * 359.74044 * 18 17 16 21 21 C 1.38436 * 119.95252 * 0.02562 * 20 18 17 22 22 F 1.35096 * 120.01393 * 180.02562 * 21 20 18 23 23 H 1.08998 * 109.46841 * 295.26528 * 1 2 3 24 24 H 1.08998 * 109.47470 * 55.26599 * 1 2 3 25 25 H 1.08999 * 109.46935 * 175.27094 * 1 2 3 26 26 H 1.09002 * 109.46934 * 240.00913 * 2 1 3 27 27 H 1.08996 * 109.47645 * 120.00335 * 2 1 3 28 28 H 1.08998 * 109.47150 * 55.06679 * 6 5 3 29 29 H 1.08998 * 109.46569 * 295.06461 * 6 5 3 30 30 H 0.97001 * 120.00728 * 180.02562 * 10 9 7 31 31 H 1.08004 * 119.97459 * 0.02562 * 16 15 3 32 32 H 1.07999 * 119.98507 * 180.25465 * 17 16 15 33 33 H 1.08008 * 120.02646 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5973 1.9844 0.8359 5 16 1.5748 2.2484 -1.5572 6 6 2.0508 3.9768 -1.2803 7 6 1.8354 4.7661 -2.5458 8 1 1.4509 4.2768 -3.4286 9 6 2.1290 6.1128 -2.5768 10 7 2.5967 6.7088 -1.5018 11 14 1.8626 7.0911 -4.1458 12 1 0.4300 7.0273 -4.5316 13 1 2.2511 8.5063 -3.9187 14 1 2.6944 6.5175 -5.2339 15 6 3.5406 1.4448 0.1381 16 6 4.3381 1.5058 -0.9893 17 6 5.7142 1.5129 -0.8639 18 6 6.2960 1.4482 0.3912 19 9 7.6415 1.4503 0.5133 20 6 5.4986 1.3818 1.5204 21 6 4.1201 1.3796 1.3939 22 9 3.3405 1.3153 2.4953 23 1 -0.3633 0.4386 0.9294 24 1 -0.3634 0.5855 -0.8445 25 1 -0.3633 -1.0242 -0.0847 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.1025 4.0232 -0.9978 29 1 1.4409 4.3980 -0.4812 30 1 2.8030 7.6564 -1.5234 31 1 3.8852 1.5522 -1.9687 32 1 6.3363 1.5647 -1.7452 33 1 5.9515 1.3317 2.4997 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413014049.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:44 Heat of formation + Delta-G solvation = -100.859785 kcal Electronic energy + Delta-G solvation = -18411.564699 eV Core-core repulsion = 15198.144958 eV Total energy + Delta-G solvation = -3213.419741 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.074 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.10251 -50.04180 -40.10148 -36.11007 -35.27618 -32.19838 -31.63252 -30.57183 -27.39980 -25.23292 -24.27847 -23.40427 -22.18456 -19.31411 -18.66284 -18.37008 -17.36354 -17.04727 -16.89630 -16.68725 -16.37609 -16.35720 -15.63358 -15.44727 -15.13765 -14.66424 -14.32146 -14.25212 -14.03554 -13.72984 -13.50376 -12.93048 -12.71974 -12.67467 -12.51001 -12.37455 -12.15980 -12.07977 -11.71355 -11.40335 -10.73526 -10.64209 -10.09083 -9.66571 -8.41521 -8.31110 -6.44882 -0.15072 -0.01408 0.92594 1.41070 1.43432 1.52033 1.95181 2.32405 2.37386 2.79739 3.03441 3.30093 3.40735 3.62495 3.87302 3.91733 4.02805 4.21950 4.40167 4.57894 4.70949 4.81266 4.86945 4.90369 4.96078 4.99634 5.07341 5.08249 5.17208 5.26772 5.45992 5.58158 5.72169 5.89786 6.63177 7.23473 8.80101 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.006480 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.269725 B = 4319.925871 C = 5468.717405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.016 4.016 4 H 0.079 0.921 5 S -0.260 6.260 6 C 0.089 3.911 7 C -0.533 4.533 8 H 0.066 0.934 9 C 0.015 3.985 10 N -0.926 5.926 11 Si 0.972 3.028 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.264 1.264 15 C -0.133 4.133 16 C -0.055 4.055 17 C -0.156 4.156 18 C 0.119 3.881 19 F -0.133 7.133 20 C -0.189 4.189 21 C 0.122 3.878 22 F -0.133 7.133 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.016 0.984 29 H 0.003 0.997 30 H 0.269 0.731 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.837 -13.398 3.992 14.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.126 4.126 3 C -0.145 4.145 4 H 0.097 0.903 5 S -0.029 6.029 6 C -0.058 4.058 7 C -0.572 4.572 8 H 0.084 0.916 9 C -0.186 4.186 10 N -0.564 5.564 11 Si 0.796 3.204 12 H -0.192 1.192 13 H -0.205 1.205 14 H -0.188 1.188 15 C -0.136 4.136 16 C -0.074 4.074 17 C -0.175 4.175 18 C 0.100 3.900 19 F -0.111 7.111 20 C -0.209 4.209 21 C 0.101 3.899 22 F -0.112 7.112 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.034 0.966 29 H 0.021 0.979 30 H 0.077 0.923 31 H 0.174 0.826 32 H 0.180 0.820 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.402 -13.690 3.204 14.466 hybrid contribution 0.602 1.579 0.944 1.935 sum 4.004 -12.112 4.147 13.414 Atomic orbital electron populations 1.21833 0.94052 1.02780 1.02301 1.21332 0.97317 0.90620 1.03364 1.22127 0.92541 1.01324 0.98535 0.90258 1.86207 1.83130 1.10023 1.23547 1.20744 0.97286 0.88622 0.99162 1.20965 1.45116 0.94129 0.96996 0.91574 1.25891 0.94055 0.98387 1.00225 1.70067 1.44248 1.11755 1.30360 0.85384 0.79180 0.77139 0.78714 1.19161 1.20518 1.18833 1.20167 0.96277 1.04616 0.92513 1.21360 0.92472 0.93813 0.99757 1.21458 0.95575 1.03205 0.97259 1.17360 0.77039 1.01709 0.93900 1.91513 1.28981 1.93794 1.96840 1.21092 0.91573 1.07486 1.00727 1.17163 0.88199 1.02420 0.82076 1.91487 1.74522 1.93611 1.51546 0.92749 0.92545 0.90407 0.90445 0.89800 0.96569 0.97888 0.92253 0.82588 0.81984 0.81463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.82 71.98 0.71 -2.96 16 2 C -0.09 -2.26 5.38 30.60 0.16 -2.10 16 3 C -0.02 -0.54 2.20 29.85 0.07 -0.47 16 4 H 0.08 2.82 7.79 -2.39 -0.02 2.81 16 5 S -0.26 -10.50 17.75 -56.49 -1.00 -11.51 16 6 C 0.09 4.65 5.53 71.23 0.39 5.04 16 7 C -0.53 -29.66 9.13 25.60 0.23 -29.43 16 8 H 0.07 3.60 7.71 -2.91 -0.02 3.58 16 9 C 0.02 0.85 5.46 84.65 0.46 1.31 16 10 N -0.93 -54.38 13.29 21.45 0.28 -54.09 16 11 Si 0.97 43.03 29.54 68.60 2.03 45.06 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 14 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 15 C -0.13 -4.26 4.68 -19.81 -0.09 -4.36 16 16 C -0.06 -1.73 8.65 22.26 0.19 -1.54 16 17 C -0.16 -4.28 10.02 22.32 0.22 -4.06 16 18 C 0.12 3.21 7.30 22.37 0.16 3.38 16 19 F -0.13 -3.45 17.27 44.97 0.78 -2.67 16 20 C -0.19 -4.99 10.01 22.35 0.22 -4.77 16 21 C 0.12 3.66 7.24 22.37 0.16 3.82 16 22 F -0.13 -3.97 16.57 44.97 0.74 -3.23 16 23 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.06 1.57 7.01 -2.39 -0.02 1.55 16 25 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.02 0.89 7.55 -2.39 -0.02 0.87 16 29 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.16 5.11 6.49 -2.91 -0.02 5.09 16 32 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 33 H 0.17 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -60.18 302.83 6.84 -53.34 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.11 Total: 9.23 kcal Atomic # 6 Polarization: -39.03 SS G_CDS: 2.90 Total: -36.13 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.28 Total: -54.09 kcal Atomic # 9 Polarization: -7.42 SS G_CDS: 1.52 Total: -5.90 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -10.50 SS G_CDS: -1.00 Total: -11.51 kcal Total: -60.18 6.84 -53.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014049.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.523 kcal (2) G-P(sol) polarization free energy of solvation -60.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds