Wall clock time and date at job start Mon Mar 30 2020 01:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30206 * 126.79261 * 2 1 4 4 O 1.20920 * 111.64610 * 180.29156 * 3 2 1 5 5 C 1.34057 * 111.55483 * 359.69853 * 4 3 2 6 6 Cl 1.73602 * 126.80264 * 180.02562 * 5 4 3 7 7 C 1.35682 * 106.40626 * 0.02562 * 5 4 3 8 8 C 1.50697 * 128.01459 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47466 * 90.02294 * 8 7 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46835 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00280 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99788 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99743 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47061 * 60.00295 * 18 16 14 20 20 H 1.48505 * 109.46988 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47116 * 300.00069 * 18 16 14 22 22 H 1.09007 * 109.46930 * 270.20164 * 1 2 3 23 23 H 1.09001 * 109.46764 * 30.19523 * 1 2 3 24 24 H 1.08995 * 109.47444 * 150.20042 * 1 2 3 25 25 H 1.09002 * 109.47120 * 330.02047 * 8 7 5 26 26 H 1.08998 * 109.46862 * 210.02849 * 8 7 5 27 27 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 29 29 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 30 30 H 1.09001 * 109.47487 * 300.00114 * 13 12 10 31 31 H 1.09002 * 109.47182 * 60.00342 * 13 12 10 32 32 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0427 0.0000 4 8 3.4540 0.7268 -0.0057 5 6 3.6037 -0.6054 -0.0038 6 17 5.1011 -1.4838 -0.0096 7 6 2.3530 -1.1315 0.0035 8 6 1.9580 -2.5858 0.0089 9 6 1.8306 -3.0744 1.4531 10 6 1.4349 -4.5285 1.4584 11 8 1.2714 -5.1163 0.4102 12 7 1.2639 -5.1761 2.6281 13 6 0.8797 -6.5898 2.6332 14 6 0.7542 -7.0710 4.0558 15 1 0.9414 -6.3917 4.8742 16 6 0.4004 -8.3787 4.3125 17 7 0.1729 -9.2061 3.3159 18 14 0.2455 -8.9754 6.0758 19 1 -0.7919 -8.1784 6.7788 20 1 -0.1440 -10.4084 6.0811 21 1 1.5485 -8.8135 6.7694 22 1 -0.3633 0.0036 1.0277 23 1 -0.3633 0.8883 -0.5169 24 1 -0.3634 -0.8917 -0.5107 25 1 2.7193 -3.1710 -0.5069 26 1 1.0016 -2.7043 -0.5005 27 1 1.0694 -2.4892 1.9689 28 1 2.7871 -2.9559 1.9624 29 1 1.3950 -4.7061 3.4663 30 1 -0.0768 -6.7083 2.1242 31 1 1.6409 -7.1750 2.1171 32 1 -0.0763 -10.1260 3.4965 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427621299.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:05 Heat of formation + Delta-G solvation = -19.518964 kcal Electronic energy + Delta-G solvation = -17902.741685 eV Core-core repulsion = 14698.352613 eV Total energy + Delta-G solvation = -3204.389072 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.071 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.15238 -40.53486 -38.28531 -36.94245 -36.08555 -34.35675 -34.12924 -31.76937 -29.75172 -29.32078 -26.47097 -24.35459 -22.61028 -22.33353 -21.22411 -19.11576 -18.80838 -18.71003 -17.47588 -17.01149 -16.84010 -16.18236 -16.01093 -15.14676 -14.69643 -14.32974 -14.23452 -14.03889 -13.91421 -13.68282 -13.55279 -13.48714 -13.24412 -12.87917 -12.84008 -12.66824 -12.22246 -12.20791 -11.81542 -11.48895 -11.03008 -10.77339 -10.75808 -10.26738 -9.78511 -8.27330 -6.43613 0.00669 0.09210 0.97228 1.44720 1.48176 1.56358 1.81270 2.33403 2.47361 2.68059 3.01129 3.07705 3.48618 3.73771 3.82187 4.04610 4.27305 4.32657 4.58013 4.67067 4.69367 4.77922 5.00598 5.05207 5.15970 5.25066 5.28168 5.51686 5.72467 5.87775 6.67732 6.94448 6.96033 7.25866 7.53293 8.84510 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.028999 B = 0.003458 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.310605 B = 8096.102835 C = 8442.577266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.038 3.962 3 N -0.369 5.369 4 O 0.099 5.901 5 C 0.000 4.000 6 Cl 0.060 6.940 7 C -0.164 4.164 8 C -0.024 4.024 9 C -0.120 4.120 10 C 0.497 3.503 11 O -0.600 6.600 12 N -0.709 5.709 13 C 0.265 3.735 14 C -0.557 4.557 15 H 0.083 0.917 16 C 0.005 3.995 17 N -0.931 5.931 18 Si 0.982 3.018 19 H -0.262 1.262 20 H -0.286 1.286 21 H -0.263 1.263 22 H 0.100 0.900 23 H 0.088 0.912 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.111 0.889 29 H 0.409 0.591 30 H -0.011 1.011 31 H -0.012 1.012 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.227 19.599 -3.463 20.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 N -0.078 5.078 4 O 0.034 5.966 5 C -0.090 4.090 6 Cl 0.088 6.912 7 C -0.168 4.168 8 C -0.062 4.062 9 C -0.160 4.160 10 C 0.285 3.715 11 O -0.483 6.483 12 N -0.359 5.359 13 C 0.142 3.858 14 C -0.595 4.595 15 H 0.101 0.899 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.805 3.195 19 H -0.187 1.187 20 H -0.212 1.212 21 H -0.188 1.188 22 H 0.118 0.882 23 H 0.106 0.894 24 H 0.114 0.886 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.138 0.862 28 H 0.129 0.871 29 H 0.244 0.756 30 H 0.007 0.993 31 H 0.005 0.995 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.997 20.228 -4.227 21.260 hybrid contribution 0.237 -1.432 0.784 1.650 sum 5.234 18.796 -3.443 19.812 Atomic orbital electron populations 1.20430 0.83219 1.05131 1.05144 1.23810 1.00393 0.87246 1.00562 1.73943 0.88798 1.23684 1.21335 1.84885 1.22169 1.21007 1.68500 1.24755 0.91638 0.84760 1.07880 1.98476 1.27586 1.68527 1.96590 1.20859 0.89924 0.98078 1.07975 1.19597 1.03885 0.86422 0.96296 1.21585 1.05386 0.90164 0.98833 1.21365 0.76539 0.90371 0.83217 1.90649 1.53924 1.70559 1.33130 1.46228 1.68320 1.12632 1.08685 1.18537 0.92954 0.77630 0.96694 1.21610 1.48747 0.97049 0.92071 0.89856 1.26030 0.94108 0.96664 1.02667 1.70122 1.46750 1.06133 1.33933 0.85250 0.79285 0.77014 0.77934 1.18655 1.21196 1.18751 0.88182 0.89366 0.88555 0.90230 0.89011 0.86201 0.87126 0.75578 0.99288 0.99452 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.39 71.24 0.74 -0.39 16 2 C 0.04 0.76 7.32 43.55 0.32 1.08 16 3 N -0.37 -8.47 12.07 -49.44 -0.60 -9.07 16 4 O 0.10 2.22 11.20 71.48 0.80 3.02 16 5 C 0.00 -0.01 8.12 67.23 0.55 0.54 16 6 Cl 0.06 1.10 29.23 -2.72 -0.08 1.02 16 7 C -0.16 -3.37 5.58 -19.71 -0.11 -3.48 16 8 C -0.02 -0.54 4.90 29.85 0.15 -0.39 16 9 C -0.12 -2.78 5.68 29.85 0.17 -2.61 16 10 C 0.50 18.18 7.83 87.66 0.69 18.87 16 11 O -0.60 -27.62 15.98 -3.03 -0.05 -27.67 16 12 N -0.71 -28.31 5.55 -466.78 -2.59 -30.90 16 13 C 0.26 14.14 5.43 85.63 0.46 14.60 16 14 C -0.56 -29.64 9.28 25.60 0.24 -29.40 16 15 H 0.08 3.98 7.60 -2.91 -0.02 3.96 16 16 C 0.01 0.27 5.46 84.66 0.46 0.73 16 17 N -0.93 -55.41 13.29 21.45 0.28 -55.13 16 18 Si 0.98 41.57 29.54 68.60 2.03 43.59 16 19 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 20 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 22 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 23 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.10 1.20 7.65 -2.39 -0.02 1.18 16 25 H 0.08 1.99 8.10 -2.39 -0.02 1.97 16 26 H 0.09 2.10 7.61 -2.39 -0.02 2.09 16 27 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.41 13.29 8.32 -92.71 -0.77 12.52 16 30 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 31 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 32 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -69.50 304.60 3.84 -65.66 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.38 Total: 9.93 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 3.66 Total: -0.46 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -2.90 Total: -95.10 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: 0.75 Total: -24.65 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 17 Polarization: 1.10 SS G_CDS: -0.08 Total: 1.02 kcal Total: -69.50 3.84 -65.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427621299.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.140 kcal (2) G-P(sol) polarization free energy of solvation -69.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds