Wall clock time and date at job start Mon Mar 30 2020 01:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86805 * 120.00229 * 2 1 4 4 H 1.48498 * 109.47200 * 239.99900 * 3 2 1 5 5 H 1.48497 * 109.47049 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.99914 * 3 2 1 7 7 C 1.40055 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99710 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99853 * 359.97438 * 7 2 1 10 10 O 1.21682 * 120.00075 * 359.72942 * 9 7 2 11 11 N 1.34784 * 119.99916 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99893 * 179.72943 * 11 9 7 13 13 C 1.50699 * 109.46700 * 180.02562 * 12 11 9 14 14 C 1.38251 * 119.56185 * 95.00166 * 13 12 11 15 15 C 1.38535 * 119.22551 * 179.97438 * 14 13 12 16 16 C 1.39142 * 118.37207 * 359.97438 * 15 14 13 17 17 O 1.35914 * 120.47065 * 180.02562 * 16 15 14 18 18 C 1.42894 * 116.99783 * 179.97438 * 17 16 15 19 19 F 1.39902 * 109.47058 * 299.99801 * 18 17 16 20 20 F 1.39893 * 109.47359 * 59.99884 * 18 17 16 21 21 C 1.38703 * 119.05513 * 359.97438 * 16 15 14 22 22 N 1.31844 * 119.55381 * 274.71872 * 13 12 11 23 23 H 0.97000 * 120.00244 * 359.97438 * 1 2 3 24 24 H 0.97005 * 119.99846 * 359.72731 * 11 9 7 25 25 H 1.08998 * 109.47134 * 299.99552 * 12 11 9 26 26 H 1.08994 * 109.47397 * 59.99843 * 12 11 9 27 27 H 1.08001 * 120.38604 * 359.94949 * 14 13 12 28 28 H 1.08001 * 120.81320 * 180.02562 * 15 14 13 29 29 H 1.09005 * 109.47243 * 180.02562 * 18 17 16 30 30 H 1.07999 * 119.66022 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7465 0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0017 10 8 0.0582 -2.4804 0.0071 11 7 1.9489 -3.6478 0.0017 12 6 1.2163 -4.9164 0.0088 13 6 2.1956 -6.0618 0.0079 14 6 2.5646 -6.6448 1.2060 15 6 3.4649 -7.6976 1.1970 16 6 3.9650 -8.1295 -0.0275 17 8 4.8502 -9.1592 -0.0860 18 6 5.3153 -9.5420 -1.3817 19 9 4.2284 -9.9355 -2.1699 20 9 5.9603 -8.4572 -1.9850 21 6 3.5465 -7.4950 -1.1877 22 7 2.6848 -6.4983 -1.1360 23 1 -0.4850 0.8400 0.0004 24 1 2.9189 -3.6478 -0.0031 25 1 0.5941 -4.9717 0.9020 26 1 0.5853 -4.9767 -0.8779 27 1 2.1559 -6.2833 2.1381 28 1 3.7705 -8.1721 2.1178 29 1 6.0140 -10.3733 -1.2861 30 1 3.9287 -7.8220 -2.1434 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447181974.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:48 Heat of formation + Delta-G solvation = -146.759843 kcal Electronic energy + Delta-G solvation = -19913.754050 eV Core-core repulsion = 16152.050719 eV Total energy + Delta-G solvation = -3761.703331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.71007 -47.70260 -40.70591 -38.50604 -37.08853 -33.58242 -32.49556 -32.32522 -30.54785 -27.31746 -26.37552 -25.03933 -23.65660 -21.99481 -19.67270 -19.42282 -18.76387 -18.27517 -17.49620 -16.47992 -15.90898 -15.77468 -15.31921 -15.11153 -14.47321 -14.27872 -14.07027 -13.98775 -13.85156 -13.60457 -13.22715 -13.12647 -12.86153 -12.60855 -12.19758 -11.55943 -11.38137 -11.13430 -10.86640 -10.43504 -10.23619 -9.90263 -9.49988 -8.82366 -8.76867 -7.59276 -7.50916 -6.16285 -4.61779 0.92843 1.12999 2.15418 3.09144 3.18441 3.22951 3.25054 3.59467 3.89072 4.14200 4.24951 4.30100 4.45416 4.60951 4.67615 4.81977 5.12550 5.18340 5.45806 5.63202 5.79872 5.91623 6.14529 6.33642 6.45885 6.67499 7.45828 7.92003 7.94941 8.07389 8.34273 9.04561 9.53274 10.61665 10.79732 Molecular weight = 272.08amu Principal moments of inertia in cm(-1) A = 0.033942 B = 0.003552 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.729842 B = 7880.312948 C = 8206.275150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.557 3.443 10 O -0.580 6.580 11 N -0.760 5.760 12 C 0.183 3.817 13 C 0.107 3.893 14 C -0.123 4.123 15 C -0.090 4.090 16 C 0.040 3.960 17 O -0.317 6.317 18 C 0.410 3.590 19 F -0.198 7.198 20 F -0.196 7.196 21 C 0.042 3.958 22 N -0.435 5.435 23 H 0.269 0.731 24 H 0.381 0.619 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.150 0.850 28 H 0.146 0.854 29 H 0.184 0.816 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.907 -19.337 0.761 22.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.361 3.639 10 O -0.462 6.462 11 N -0.416 5.416 12 C 0.058 3.942 13 C -0.031 4.031 14 C -0.143 4.143 15 C -0.116 4.116 16 C -0.005 4.005 17 O -0.234 6.234 18 C 0.320 3.680 19 F -0.180 7.180 20 F -0.178 7.178 21 C -0.117 4.117 22 N -0.145 5.145 23 H 0.080 0.920 24 H 0.212 0.788 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.167 0.833 28 H 0.164 0.836 29 H 0.200 0.800 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.595 -18.924 0.108 21.689 hybrid contribution 1.284 0.320 0.400 1.383 sum 11.879 -18.604 0.508 22.079 Atomic orbital electron populations 1.70005 1.07045 1.27386 1.35239 1.25700 0.94624 1.00249 0.92612 0.86421 0.79800 0.80995 0.79442 1.19278 1.20555 1.19305 1.20828 0.93564 0.89252 1.54450 0.91466 1.18224 0.87197 0.82191 0.76312 1.90601 1.14023 1.86612 1.54994 1.46138 1.08590 1.03956 1.82931 1.19720 0.91271 0.80965 1.02274 1.21697 0.96714 0.96825 0.87906 1.22000 0.96918 0.95197 1.00172 1.20917 0.97332 0.97355 0.95999 1.19955 0.93579 0.90492 0.96470 1.86595 1.58384 1.49140 1.29271 1.23418 0.82634 0.86860 0.75124 1.93118 1.58332 1.90827 1.75675 1.93124 1.81527 1.59062 1.84105 1.23249 0.96987 0.94492 0.97015 1.67535 1.07449 1.09882 1.29590 0.92033 0.78807 0.91421 0.91329 0.83263 0.83640 0.80006 0.82363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.24 11.83 55.55 0.66 -22.58 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 3 Si 0.91 20.36 29.56 -169.99 -5.02 15.33 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.54 -15.61 9.54 -35.63 -0.34 -15.95 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.56 16.11 7.75 -12.99 -0.10 16.01 16 10 O -0.58 -18.94 15.02 5.20 0.08 -18.86 16 11 N -0.76 -17.60 5.54 -62.91 -0.35 -17.95 16 12 C 0.18 3.66 5.98 -5.19 -0.03 3.63 16 13 C 0.11 1.77 6.15 -82.58 -0.51 1.26 16 14 C -0.12 -1.62 9.71 -39.47 -0.38 -2.00 16 15 C -0.09 -1.04 10.13 -39.14 -0.40 -1.44 16 16 C 0.04 0.50 6.50 -39.07 -0.25 0.25 16 17 O -0.32 -3.11 10.44 -19.47 -0.20 -3.31 16 18 C 0.41 2.93 5.98 101.05 0.60 3.53 16 19 F -0.20 -1.80 15.60 2.25 0.04 -1.77 16 20 F -0.20 -1.85 15.60 2.25 0.04 -1.81 16 21 C 0.04 0.60 9.45 -17.37 -0.16 0.43 16 22 N -0.43 -7.46 10.27 -9.35 -0.10 -7.56 16 23 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 24 H 0.38 8.06 8.44 -40.82 -0.34 7.72 16 25 H 0.07 1.32 8.04 -51.93 -0.42 0.90 16 26 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 29 H 0.18 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.16 2.09 5.12 -52.49 -0.27 1.82 16 LS Contribution 282.02 15.07 4.25 4.25 Total: -1.00 -36.33 282.02 -4.55 -40.88 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -2.27 Total: 5.27 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -1.67 Total: 8.11 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.21 Total: -48.09 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.13 Total: -22.17 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.07 Total: -3.58 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -36.33 -4.55 -40.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447181974.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.879 kcal (2) G-P(sol) polarization free energy of solvation -36.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds