Wall clock time and date at job start Mon Mar 30 2020 01:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.50706 * 109.46783 * 239.99845 * 2 1 3 5 5 H 1.07996 * 119.99928 * 239.99923 * 4 2 1 6 6 C 1.37880 * 119.99611 * 60.00217 * 4 2 1 7 7 N 1.31511 * 120.00327 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99743 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46999 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46979 * 120.00025 * 8 6 4 11 11 H 1.48498 * 109.46942 * 239.99938 * 8 6 4 12 12 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 13 13 S 1.81404 * 109.46946 * 299.99763 * 12 2 1 14 14 C 1.76192 * 102.99967 * 180.02562 * 13 12 2 15 15 C 1.38880 * 120.07559 * 359.72416 * 14 13 12 16 16 C 1.38331 * 119.92310 * 179.81789 * 15 14 13 17 17 F 1.35100 * 119.96590 * 180.23011 * 16 15 14 18 18 C 1.38496 * 120.06348 * 0.43645 * 16 15 14 19 19 C 1.38292 * 120.14978 * 359.79138 * 18 16 15 20 20 C 1.38253 * 120.07755 * 0.02562 * 19 18 16 21 21 F 1.35097 * 120.03536 * 179.97438 * 20 19 18 22 22 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 23 23 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 24 24 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 27 27 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 28 28 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47398 * 59.99826 * 12 2 1 30 30 H 1.09001 * 109.47194 * 180.02562 * 12 2 1 31 31 H 1.08001 * 120.03355 * 359.97438 * 15 14 13 32 32 H 1.08001 * 119.92502 * 179.76965 * 18 16 15 33 33 H 1.08001 * 119.96162 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1471 -2.2864 -3.6039 10 1 1.1675 -1.5865 -4.8165 11 1 3.1470 -0.1858 -4.8161 12 6 2.0401 -0.7213 1.2492 13 16 1.4354 0.1338 2.7304 14 6 2.1132 -0.8235 4.0451 15 6 2.8941 -1.9372 3.7644 16 6 3.4278 -2.6843 4.7990 17 9 4.1914 -3.7651 4.5269 18 6 3.1766 -2.3280 6.1136 19 6 2.3955 -1.2223 6.3964 20 6 1.8622 -0.4691 5.3670 21 9 1.0989 0.6105 5.6442 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9562 0.8900 28 1 0.7080 1.1609 -3.4844 29 1 1.6767 -1.7490 1.2492 30 1 3.1301 -0.7209 1.2494 31 1 3.0865 -2.2180 2.7394 32 1 3.5913 -2.9151 6.9196 33 1 2.2012 -0.9474 7.4226 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567062673.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:38 Heat of formation + Delta-G solvation = -76.958140 kcal Electronic energy + Delta-G solvation = -18285.794442 eV Core-core repulsion = 15073.411154 eV Total energy + Delta-G solvation = -3212.383288 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.074 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.97589 -48.83419 -38.60777 -36.10186 -31.77134 -31.45229 -29.90957 -26.48388 -25.74034 -25.21462 -23.60642 -22.60149 -19.25138 -18.14113 -17.45648 -17.06945 -16.10254 -15.89942 -15.72493 -15.32885 -14.85097 -14.44888 -14.03870 -13.87212 -13.53708 -13.32620 -12.82059 -12.60411 -12.33708 -12.18594 -11.46110 -11.40295 -11.12223 -10.93990 -10.68838 -10.40536 -10.18753 -9.93601 -9.87097 -9.61194 -9.54572 -8.76710 -8.72606 -8.44962 -7.10441 -6.07354 -4.19335 0.85493 0.91968 1.78131 2.86714 3.22903 3.24588 3.31900 3.35008 4.14402 4.15160 4.34190 4.54942 4.79862 5.07317 5.19030 5.34482 5.73775 5.77300 5.82399 5.88810 5.93847 5.98807 6.36249 6.67240 6.70653 6.85066 6.99333 7.01737 7.28827 7.52085 7.64068 7.96209 8.07371 8.30539 8.79769 9.46711 10.93706 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.025681 B = 0.005040 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.053693 B = 5554.230293 C = 6453.218248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.082 3.918 3 C -0.136 4.136 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.894 3.106 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.085 4.085 13 S -0.076 6.076 14 C -0.094 4.094 15 C -0.149 4.149 16 C 0.110 3.890 17 F -0.136 7.136 18 C -0.148 4.148 19 C -0.107 4.107 20 C 0.093 3.907 21 F -0.127 7.127 22 H 0.019 0.981 23 H 0.087 0.913 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.087 0.913 27 H 0.019 0.981 28 H 0.261 0.739 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.676 -3.789 14.587 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.080 3.920 3 C -0.193 4.193 4 C -0.548 4.548 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C -0.233 4.233 13 S 0.175 5.825 14 C -0.209 4.209 15 C -0.175 4.175 16 C 0.089 3.911 17 F -0.115 7.115 18 C -0.171 4.171 19 C -0.127 4.127 20 C 0.067 3.933 21 F -0.106 7.106 22 H 0.038 0.962 23 H 0.106 0.894 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.106 0.894 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.844 -2.612 14.341 14.693 hybrid contribution 1.198 -1.693 -0.880 2.252 sum 3.041 -4.304 13.461 14.456 Atomic orbital electron populations 1.21905 0.97189 0.99415 1.00835 1.18016 0.93106 0.92557 0.88275 1.21903 0.98598 0.98012 1.00835 1.21014 1.31894 1.12215 0.89666 0.92488 1.24881 0.94784 0.94898 0.98822 1.69819 1.36288 1.22595 1.23300 0.86505 0.78674 0.79678 0.82954 1.19823 1.20952 1.20946 1.24345 1.02943 1.01921 0.94067 1.86024 1.62768 1.37025 0.96675 1.22251 1.01366 0.99609 0.97634 1.21132 1.00442 0.95625 1.00336 1.17539 0.94138 0.85854 0.93543 1.91511 1.73060 1.52224 1.94679 1.20859 1.02067 0.99021 0.95129 1.20834 0.98021 0.94926 0.98951 1.17076 0.96923 0.87633 0.91686 1.91520 1.72923 1.52033 1.94088 0.96234 0.89429 0.95354 0.95349 0.89437 0.96224 0.92882 0.90411 0.90411 0.83410 0.83956 0.83665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.01 37.16 0.30 -2.84 16 2 C 0.08 1.90 0.52 -155.66 -0.08 1.82 16 3 C -0.14 -3.14 8.01 37.16 0.30 -2.85 16 4 C -0.51 -12.97 8.01 -34.44 -0.28 -13.25 16 5 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 6 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 7 N -0.88 -23.44 9.35 55.43 0.52 -22.92 16 8 Si 0.89 20.33 29.54 -169.99 -5.02 15.30 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 C -0.08 -1.67 3.27 37.16 0.12 -1.55 16 13 S -0.08 -1.37 18.58 -107.50 -2.00 -3.37 16 14 C -0.09 -1.48 6.11 -39.01 -0.24 -1.72 16 15 C -0.15 -2.20 9.34 -39.31 -0.37 -2.57 16 16 C 0.11 1.44 7.29 -39.45 -0.29 1.16 16 17 F -0.14 -1.82 17.27 2.25 0.04 -1.78 16 18 C -0.15 -1.59 10.02 -39.47 -0.40 -1.99 16 19 C -0.11 -1.18 10.02 -39.56 -0.40 -1.57 16 20 C 0.09 1.33 7.28 -39.24 -0.29 1.04 16 21 F -0.13 -1.92 16.76 2.25 0.04 -1.88 16 22 H 0.02 0.41 6.91 -51.93 -0.36 0.05 16 23 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 24 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 27 H 0.02 0.41 6.91 -51.93 -0.36 0.06 16 28 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 29 H 0.08 1.48 7.74 -51.92 -0.40 1.08 16 30 H 0.08 1.48 7.76 -51.92 -0.40 1.08 16 31 H 0.15 2.20 5.88 -52.49 -0.31 1.89 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 291.64 15.07 4.40 4.40 Total: -1.00 -26.15 291.64 -7.42 -33.57 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -3.69 Total: -0.69 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -1.70 Total: -22.63 kcal Atomic # 7 Polarization: -23.44 SS G_CDS: 0.52 Total: -22.92 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.08 Total: -3.66 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.00 Total: -3.37 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.15 -7.42 -33.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567062673.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.385 kcal (2) G-P(sol) polarization free energy of solvation -26.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds