Wall clock time and date at job start Mon Mar 30 2020 01:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.46903 * 2 1 4 4 N 1.29319 * 126.06100 * 90.02466 * 3 2 1 5 5 N 1.26103 * 117.97503 * 179.97438 * 4 3 2 6 6 C 1.30300 * 117.60526 * 0.02562 * 5 4 3 7 7 S 1.76202 * 126.17291 * 179.97438 * 6 5 4 8 8 C 1.81005 * 99.99806 * 0.02562 * 7 6 5 9 9 C 1.52992 * 109.47035 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47084 * 299.99577 * 9 8 7 11 11 C 1.53000 * 109.47398 * 59.99914 * 9 8 7 12 12 C 1.50706 * 109.47316 * 180.02562 * 9 8 7 13 13 H 1.08008 * 119.99418 * 359.97438 * 12 9 8 14 14 C 1.37869 * 120.00496 * 179.97438 * 12 9 8 15 15 N 1.31518 * 119.99661 * 359.97438 * 14 12 9 16 16 Si 1.86793 * 120.00303 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47346 * 90.00032 * 16 14 12 18 18 H 1.48498 * 109.47260 * 209.99849 * 16 14 12 19 19 H 1.48504 * 109.47175 * 329.99595 * 16 14 12 20 20 S 1.76484 * 126.05921 * 269.99632 * 3 2 1 21 21 H 1.09007 * 109.46783 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47047 * 299.99810 * 1 2 3 23 23 H 1.08996 * 109.47382 * 60.00254 * 1 2 3 24 24 H 1.09000 * 109.46823 * 239.99702 * 2 1 3 25 25 H 1.09000 * 109.47119 * 120.00163 * 2 1 3 26 26 H 1.08996 * 109.46998 * 300.00045 * 8 7 6 27 27 H 1.08995 * 109.46978 * 60.00050 * 8 7 6 28 28 H 1.08998 * 109.46808 * 60.00116 * 10 9 8 29 29 H 1.09002 * 109.47269 * 179.97438 * 10 9 8 30 30 H 1.08995 * 109.47405 * 300.00478 * 10 9 8 31 31 H 1.08996 * 109.47132 * 59.99887 * 11 9 8 32 32 H 1.09002 * 109.46880 * 180.02562 * 11 9 8 33 33 H 1.08995 * 109.46758 * 299.99433 * 11 9 8 34 34 H 0.97004 * 119.99760 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2864 2.1383 1.0454 5 7 2.7030 3.3153 0.8680 6 6 2.8475 3.7260 -0.3601 7 16 3.4100 5.3176 -0.8651 8 6 3.6820 6.0826 0.7527 9 6 4.1874 7.5140 0.5614 10 6 5.5031 7.4903 -0.2192 11 6 3.1472 8.3224 -0.2166 12 6 4.4145 8.1507 1.9083 13 1 4.2176 7.5905 2.8105 14 6 4.8736 9.4483 1.9889 15 7 5.1138 10.1302 0.8902 16 14 5.1558 10.2372 3.6583 17 1 6.5505 9.9795 4.0983 18 1 4.9311 11.7017 3.5581 19 1 4.2101 9.6578 4.6459 20 16 2.3786 2.4002 -1.4267 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.7447 6.0999 1.3086 27 1 4.4228 5.5064 1.3070 28 1 5.3392 7.0296 -1.1934 29 1 5.8629 8.5101 -0.3559 30 1 6.2441 6.9143 0.3350 31 1 2.2099 8.3393 0.3396 32 1 3.5075 9.3421 -0.3532 33 1 2.9835 7.8618 -1.1908 34 1 5.4371 11.0430 0.9469 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594920317.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:34 Heat of formation + Delta-G solvation = 39.875456 kcal Electronic energy + Delta-G solvation = -16222.873789 eV Core-core repulsion = 13601.689924 eV Total energy + Delta-G solvation = -2621.183865 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 272.071 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.74863 -36.08732 -34.60838 -31.60828 -30.48699 -26.78382 -26.10223 -25.76687 -25.18062 -23.49980 -20.56969 -19.33727 -18.67549 -16.89361 -16.04290 -15.61829 -14.96352 -14.76725 -14.38862 -13.85202 -13.44036 -13.36459 -12.92432 -12.68405 -12.30311 -11.98912 -11.54026 -11.51948 -11.34352 -10.93042 -10.84475 -10.53773 -10.41809 -10.29305 -10.22022 -10.17231 -9.87645 -9.63685 -9.53066 -9.51540 -8.75168 -8.42892 -7.34221 -6.05086 -4.16054 0.41303 0.76818 1.30101 1.77234 2.67624 2.72174 3.27213 3.34319 3.38626 4.09798 4.37861 4.70338 4.91095 5.05695 5.14463 5.21588 5.50589 5.54667 5.70598 5.89643 5.92854 6.03179 6.45285 6.73313 6.82653 6.93885 6.96228 7.28163 7.50924 7.66999 7.95700 8.08227 8.32542 8.68889 8.83295 9.49774 10.96271 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.037946 B = 0.004177 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.720433 B = 6701.734617 C = 7160.091382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.037 4.037 3 C 0.015 3.985 4 N -0.250 5.250 5 N -0.276 5.276 6 C 0.012 3.988 7 S 0.024 5.976 8 C -0.078 4.078 9 C 0.079 3.921 10 C -0.137 4.137 11 C -0.136 4.136 12 C -0.505 4.505 13 H 0.059 0.941 14 C 0.068 3.932 15 N -0.885 5.885 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 S 0.067 5.933 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.015 0.985 29 H 0.089 0.911 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.089 0.911 33 H 0.015 0.985 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.077 -15.614 -6.161 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.079 4.079 3 C -0.271 4.271 4 N -0.085 5.085 5 N -0.118 5.118 6 C -0.374 4.374 7 S 0.258 5.742 8 C -0.227 4.227 9 C 0.077 3.923 10 C -0.195 4.195 11 C -0.194 4.194 12 C -0.545 4.545 13 H 0.077 0.923 14 C -0.134 4.134 15 N -0.523 5.523 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 S 0.306 5.694 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.106 0.894 25 H 0.116 0.884 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.034 0.966 29 H 0.108 0.892 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.107 0.893 33 H 0.034 0.966 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.813 -14.876 -7.013 17.444 hybrid contribution 0.013 -0.054 2.103 2.103 sum -5.800 -14.930 -4.910 16.753 Atomic orbital electron populations 1.21789 0.93362 1.02604 1.02918 1.20107 0.96735 0.86609 1.04446 1.29767 1.05257 1.02799 0.89255 1.70716 1.11406 0.99239 1.27125 1.71768 1.17378 1.06515 1.16125 1.32100 1.04365 1.06838 0.94133 1.85994 1.75617 0.96185 1.16409 1.24304 1.05113 1.01707 0.91606 1.18096 0.92487 0.85395 0.96345 1.21938 0.98336 1.03422 0.95760 1.21932 0.97900 1.03837 0.95768 1.20987 1.44622 0.97894 0.90989 0.92306 1.24876 0.94965 0.96926 0.96643 1.69806 1.45278 1.10665 1.26558 0.86538 0.78621 0.78406 0.84140 1.20638 1.21177 1.19859 1.85553 1.63740 1.07053 1.13032 0.91214 0.91808 0.92292 0.89438 0.88432 0.89658 0.89652 0.96578 0.89236 0.95118 0.95111 0.89252 0.96568 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.16 0.37 -0.76 16 2 C -0.04 -0.32 6.56 -27.88 -0.18 -0.51 16 3 C 0.02 0.20 7.04 -13.34 -0.09 0.11 16 4 N -0.25 -4.28 11.55 33.57 0.39 -3.90 16 5 N -0.28 -5.27 10.96 31.32 0.34 -4.92 16 6 C 0.01 0.20 7.85 52.11 0.41 0.61 16 7 S 0.02 0.44 19.36 -107.50 -2.08 -1.64 16 8 C -0.08 -1.63 4.16 37.15 0.15 -1.48 16 9 C 0.08 1.86 0.52 -155.66 -0.08 1.78 16 10 C -0.14 -3.15 8.01 37.16 0.30 -2.85 16 11 C -0.14 -3.14 8.01 37.16 0.30 -2.84 16 12 C -0.51 -13.21 8.01 -34.44 -0.28 -13.49 16 13 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 14 C 0.07 1.78 5.15 -17.82 -0.09 1.68 16 15 N -0.88 -23.59 9.35 55.43 0.52 -23.07 16 16 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 S 0.07 0.90 23.54 -107.50 -2.53 -1.63 16 21 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.08 1.83 8.14 -51.92 -0.42 1.41 16 27 H 0.08 1.83 8.14 -51.92 -0.42 1.41 16 28 H 0.02 0.33 6.91 -51.93 -0.36 -0.03 16 29 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 33 H 0.02 0.33 6.91 -51.93 -0.36 -0.03 16 34 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 306.11 15.07 4.61 4.61 Total: -1.00 -27.82 306.11 -7.66 -35.48 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -4.69 Total: -2.86 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 0.80 Total: -17.75 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 1.25 Total: -31.89 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -4.61 Total: -3.27 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.82 -7.66 -35.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594920317.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.358 kcal (2) G-P(sol) polarization free energy of solvation -27.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds