Wall clock time and date at job start Mon Mar 30 2020 01:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.46903 * 2 1 4 4 N 1.29319 * 126.06100 * 90.02466 * 3 2 1 5 5 N 1.26103 * 117.97503 * 179.97438 * 4 3 2 6 6 C 1.30300 * 117.60526 * 0.02562 * 5 4 3 7 7 S 1.76202 * 126.17291 * 179.97438 * 6 5 4 8 8 C 1.81005 * 99.99806 * 0.02562 * 7 6 5 9 9 C 1.52992 * 109.47035 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47084 * 299.99577 * 9 8 7 11 11 C 1.53000 * 109.47398 * 59.99914 * 9 8 7 12 12 C 1.50706 * 109.47316 * 180.02562 * 9 8 7 13 13 H 1.08008 * 119.99418 * 359.97438 * 12 9 8 14 14 C 1.37869 * 120.00496 * 179.97438 * 12 9 8 15 15 N 1.31518 * 119.99661 * 359.97438 * 14 12 9 16 16 Si 1.86793 * 120.00303 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47346 * 90.00032 * 16 14 12 18 18 H 1.48498 * 109.47260 * 209.99849 * 16 14 12 19 19 H 1.48504 * 109.47175 * 329.99595 * 16 14 12 20 20 S 1.76484 * 126.05921 * 269.99632 * 3 2 1 21 21 H 1.09007 * 109.46783 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47047 * 299.99810 * 1 2 3 23 23 H 1.08996 * 109.47382 * 60.00254 * 1 2 3 24 24 H 1.09000 * 109.46823 * 239.99702 * 2 1 3 25 25 H 1.09000 * 109.47119 * 120.00163 * 2 1 3 26 26 H 1.08996 * 109.46998 * 300.00045 * 8 7 6 27 27 H 1.08995 * 109.46978 * 60.00050 * 8 7 6 28 28 H 1.08998 * 109.46808 * 60.00116 * 10 9 8 29 29 H 1.09002 * 109.47269 * 179.97438 * 10 9 8 30 30 H 1.08995 * 109.47405 * 300.00478 * 10 9 8 31 31 H 1.08996 * 109.47132 * 59.99887 * 11 9 8 32 32 H 1.09002 * 109.46880 * 180.02562 * 11 9 8 33 33 H 1.08995 * 109.46758 * 299.99433 * 11 9 8 34 34 H 0.97004 * 119.99760 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2864 2.1383 1.0454 5 7 2.7030 3.3153 0.8680 6 6 2.8475 3.7260 -0.3601 7 16 3.4100 5.3176 -0.8651 8 6 3.6820 6.0826 0.7527 9 6 4.1874 7.5140 0.5614 10 6 5.5031 7.4903 -0.2192 11 6 3.1472 8.3224 -0.2166 12 6 4.4145 8.1507 1.9083 13 1 4.2176 7.5905 2.8105 14 6 4.8736 9.4483 1.9889 15 7 5.1138 10.1302 0.8902 16 14 5.1558 10.2372 3.6583 17 1 6.5505 9.9795 4.0983 18 1 4.9311 11.7017 3.5581 19 1 4.2101 9.6578 4.6459 20 16 2.3786 2.4002 -1.4267 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.7447 6.0999 1.3086 27 1 4.4228 5.5064 1.3070 28 1 5.3392 7.0296 -1.1934 29 1 5.8629 8.5101 -0.3559 30 1 6.2441 6.9143 0.3350 31 1 2.2099 8.3393 0.3396 32 1 3.5075 9.3421 -0.3532 33 1 2.9835 7.8618 -1.1908 34 1 5.4371 11.0430 0.9469 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594920317.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:33 Heat of formation + Delta-G solvation = 24.749672 kcal Electronic energy + Delta-G solvation = -16223.529692 eV Core-core repulsion = 13601.689924 eV Total energy + Delta-G solvation = -2621.839768 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 272.071 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.00267 -37.95252 -35.45679 -33.58187 -31.61415 -28.18995 -27.63545 -27.50508 -27.18951 -24.38329 -21.75459 -21.01252 -20.01013 -18.23711 -17.90495 -16.85117 -16.70026 -16.11330 -15.50969 -15.13251 -15.01938 -14.61123 -14.48884 -13.96139 -13.66727 -13.31233 -13.21879 -12.76509 -12.71691 -12.59965 -12.30010 -12.28496 -12.12548 -11.93142 -11.60657 -11.51474 -11.41314 -11.34798 -11.17278 -10.64434 -10.61635 -10.41779 -8.74384 -8.04447 -6.21308 -0.76285 -0.45277 0.10731 0.49052 1.15195 1.42162 1.43459 1.45139 1.53617 2.44980 3.14659 3.19058 3.80459 4.04228 4.18800 4.25609 4.26172 4.34201 4.66865 4.77141 4.92137 4.96619 4.98498 5.04611 5.09282 5.13462 5.30441 5.40038 5.60546 5.64727 6.06306 6.15001 6.37750 6.81679 7.46064 7.46578 8.94856 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.037946 B = 0.004177 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.720433 B = 6701.734617 C = 7160.091382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 C 0.033 3.967 4 N -0.291 5.291 5 N -0.305 5.305 6 C -0.024 4.024 7 S 0.040 5.960 8 C -0.071 4.071 9 C 0.072 3.928 10 C -0.126 4.126 11 C -0.126 4.126 12 C -0.526 4.526 13 H 0.047 0.953 14 C 0.029 3.971 15 N -0.900 5.900 16 Si 0.948 3.052 17 H -0.278 1.278 18 H -0.281 1.281 19 H -0.275 1.275 20 S 0.134 5.866 21 H 0.098 0.902 22 H 0.045 0.955 23 H 0.059 0.941 24 H 0.119 0.881 25 H 0.108 0.892 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.066 0.934 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.814 -17.845 -7.259 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 C -0.252 4.252 4 N -0.126 5.126 5 N -0.146 5.146 6 C -0.411 4.411 7 S 0.272 5.728 8 C -0.221 4.221 9 C 0.069 3.931 10 C -0.184 4.184 11 C -0.184 4.184 12 C -0.566 4.566 13 H 0.065 0.935 14 C -0.171 4.171 15 N -0.539 5.539 16 Si 0.774 3.226 17 H -0.204 1.204 18 H -0.207 1.207 19 H -0.200 1.200 20 S 0.375 5.625 21 H 0.117 0.883 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.138 0.862 25 H 0.126 0.874 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.555 -17.123 -8.110 20.048 hybrid contribution 0.153 0.399 2.373 2.411 sum -6.402 -16.724 -5.737 18.804 Atomic orbital electron populations 1.21800 0.92219 1.04301 1.02110 1.20490 0.97491 0.83761 1.06528 1.30719 1.01739 1.04046 0.88688 1.70712 1.13881 0.99262 1.28704 1.71740 1.17624 1.07748 1.17512 1.31985 1.06112 1.07657 0.95335 1.85590 1.76934 0.97011 1.13257 1.23861 1.03859 1.00613 0.93763 1.18079 0.92883 0.86824 0.95270 1.21782 0.97900 1.02003 0.96741 1.21777 0.97319 1.02562 0.96747 1.21262 1.44943 0.98408 0.91983 0.93505 1.25475 0.94897 0.97365 0.99360 1.69913 1.45466 1.10738 1.27758 0.85716 0.78343 0.77662 0.80853 1.20384 1.20694 1.20025 1.85274 1.61935 1.04229 1.11107 0.88319 0.93583 0.92163 0.86249 0.87403 0.90989 0.90944 0.94508 0.91490 0.95629 0.95621 0.91508 0.94501 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.89 71.98 0.71 -1.02 16 2 C -0.04 -0.57 6.56 29.85 0.20 -0.37 16 3 C 0.03 0.81 7.04 88.48 0.62 1.43 16 4 N -0.29 -9.72 11.55 -47.71 -0.55 -10.28 16 5 N -0.31 -11.60 10.96 -54.83 -0.60 -12.20 16 6 C -0.02 -0.82 7.85 130.47 1.02 0.21 16 7 S 0.04 1.41 19.36 -56.49 -1.09 0.32 16 8 C -0.07 -3.05 4.16 71.98 0.30 -2.75 16 9 C 0.07 3.42 0.52 -52.93 -0.03 3.39 16 10 C -0.13 -5.87 8.01 71.98 0.58 -5.30 16 11 C -0.13 -5.86 8.01 71.98 0.58 -5.29 16 12 C -0.53 -28.20 8.01 25.60 0.21 -28.00 16 13 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 14 C 0.03 1.55 5.15 84.65 0.44 1.98 16 15 N -0.90 -48.69 9.35 21.45 0.20 -48.49 16 16 Si 0.95 42.94 29.54 68.60 2.03 44.96 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 S 0.13 3.26 23.54 -56.49 -1.33 1.93 16 21 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 22 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 3.21 8.14 -2.40 -0.02 3.19 16 27 H 0.07 3.22 8.14 -2.40 -0.02 3.21 16 28 H 0.04 1.51 6.91 -2.39 -0.02 1.49 16 29 H 0.07 3.43 6.07 -2.39 -0.01 3.41 16 30 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 3.42 6.07 -2.39 -0.01 3.40 16 33 H 0.04 1.51 6.91 -2.39 -0.02 1.50 16 34 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -60.88 306.11 4.36 -56.51 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 1.09 Total: 2.95 kcal Atomic # 6 Polarization: -40.33 SS G_CDS: 4.62 Total: -35.71 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: -0.95 Total: -70.96 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 4.67 SS G_CDS: -2.42 Total: 2.25 kcal Total: -60.88 4.36 -56.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594920317.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.264 kcal (2) G-P(sol) polarization free energy of solvation -60.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds