Wall clock time and date at job start Mon Mar 30 2020 01:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30179 * 126.79994 * 2 1 4 4 O 1.20921 * 111.60256 * 180.25289 * 3 2 1 5 5 C 1.34040 * 111.56554 * 359.74465 * 4 3 2 6 6 C 1.35452 * 106.45024 * 0.02562 * 5 4 3 7 7 S 1.76199 * 128.00789 * 179.97438 * 6 5 4 8 8 O 1.42093 * 106.40246 * 1.48161 * 7 6 5 9 9 O 1.42099 * 106.39823 * 228.55986 * 7 6 5 10 10 N 1.65599 * 107.21656 * 115.02438 * 7 6 5 11 11 C 1.36933 * 120.00165 * 89.99783 * 10 7 6 12 12 H 1.08008 * 120.00035 * 231.54049 * 11 10 7 13 13 C 1.38809 * 120.00006 * 51.54323 * 11 10 7 14 14 N 1.31620 * 120.00160 * 23.27637 * 13 11 10 15 15 Si 1.86802 * 119.99938 * 203.27235 * 13 11 10 16 16 H 1.48508 * 109.46870 * 180.02562 * 15 13 11 17 17 H 1.48501 * 109.47147 * 299.99999 * 15 13 11 18 18 H 1.48494 * 109.47003 * 60.00068 * 15 13 11 19 19 C 1.46505 * 119.99824 * 269.99335 * 10 7 6 20 20 C 1.52996 * 117.49852 * 183.41862 * 19 10 7 21 21 C 1.53004 * 60.00258 * 252.51329 * 20 19 10 22 22 H 1.08998 * 109.46731 * 270.16522 * 1 2 3 23 23 H 1.08998 * 109.47182 * 30.16335 * 1 2 3 24 24 H 1.08999 * 109.47235 * 150.16488 * 1 2 3 25 25 H 1.08001 * 126.77576 * 179.97438 * 5 4 3 26 26 H 0.97001 * 120.00569 * 174.95271 * 14 13 11 27 27 H 1.08994 * 115.55136 * 329.13124 * 19 10 7 28 28 H 1.08996 * 117.49945 * 359.97438 * 20 19 10 29 29 H 1.08997 * 117.50164 * 145.02447 * 20 19 10 30 30 H 1.09001 * 117.49772 * 252.51405 * 21 20 19 31 31 H 1.08997 * 117.49970 * 107.48484 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7254 -0.0050 5 6 3.6024 -0.6067 -0.0035 6 6 2.3539 -1.1320 0.0027 7 16 1.8923 -2.8325 0.0068 8 8 3.1024 -3.5767 0.0376 9 8 0.9120 -2.9845 -1.0106 10 7 1.1245 -3.1285 1.4439 11 6 -0.2321 -2.9699 1.5407 12 1 -0.6502 -2.3669 2.3333 13 6 -1.0702 -3.5841 0.6203 14 7 -0.6583 -4.6468 -0.0381 15 14 -2.7826 -2.9026 0.3161 16 1 -3.4716 -3.7328 -0.7045 17 1 -3.5585 -2.9303 1.5820 18 1 -2.6793 -1.5035 -0.1707 19 6 1.8968 -3.5601 2.6116 20 6 1.1211 -3.8947 3.8872 21 6 1.9522 -2.6124 3.8115 22 1 -0.3633 0.0030 1.0277 23 1 -0.3633 0.8885 -0.5164 24 1 -0.3633 -0.8914 -0.5113 25 1 4.5339 -1.1534 -0.0073 26 1 -1.2678 -5.1194 -0.6264 27 1 2.7874 -4.1498 2.3945 28 1 0.0362 -3.7933 3.8577 29 1 1.5012 -4.7048 4.5095 30 1 2.8792 -2.5789 4.3840 31 1 1.4142 -1.6678 3.7320 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601321454.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:25 Heat of formation + Delta-G solvation = 24.785376 kcal Electronic energy + Delta-G solvation = -20184.726208 eV Core-core repulsion = 16984.302022 eV Total energy + Delta-G solvation = -3200.424186 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.45218 -37.22895 -35.75938 -34.31675 -34.18809 -33.37741 -31.35124 -30.71146 -28.14875 -25.01876 -23.18168 -21.64370 -20.96404 -20.54296 -18.93285 -17.97607 -17.21508 -16.54262 -16.08198 -15.40110 -15.06620 -14.48135 -14.09534 -13.81875 -13.41355 -12.79286 -12.62299 -12.39874 -12.03627 -11.78178 -11.50123 -11.25070 -10.98056 -10.86189 -10.70306 -10.54852 -10.47107 -10.39565 -10.03980 -10.01277 -9.76052 -9.40190 -9.24800 -8.78246 -7.62073 -6.61700 -4.28249 1.65158 1.89753 2.50225 3.14349 3.19742 3.21831 3.64658 4.02050 4.47312 4.61659 4.66672 4.83538 4.98740 5.27568 5.44547 5.66663 5.71774 5.78281 5.82887 6.06316 6.10528 6.23425 6.26465 6.30889 6.42273 6.68021 6.74735 6.92615 7.29721 7.43654 8.10746 8.60735 8.79390 9.22370 10.43859 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.017376 B = 0.011070 C = 0.009132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.046601 B = 2528.852075 C = 3065.452435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.104 3.896 3 N -0.387 5.387 4 O 0.083 5.917 5 C 0.030 3.970 6 C -0.756 4.756 7 S 2.586 3.414 8 O -1.013 7.013 9 O -0.938 6.938 10 N -0.783 5.783 11 C -0.284 4.284 12 H 0.082 0.918 13 C 0.066 3.934 14 N -0.776 5.776 15 Si 0.916 3.084 16 H -0.280 1.280 17 H -0.271 1.271 18 H -0.261 1.261 19 C 0.097 3.903 20 C -0.160 4.160 21 C -0.215 4.215 22 H 0.089 0.911 23 H 0.069 0.931 24 H 0.104 0.896 25 H 0.222 0.778 26 H 0.282 0.718 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.019 3.941 3.954 5.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 N -0.097 5.097 4 O 0.023 5.977 5 C -0.054 4.054 6 C -0.833 4.833 7 S 2.682 3.318 8 O -1.003 7.003 9 O -0.927 6.927 10 N -0.605 5.605 11 C -0.431 4.431 12 H 0.100 0.900 13 C -0.154 4.154 14 N -0.410 5.410 15 Si 0.741 3.259 16 H -0.205 1.205 17 H -0.197 1.197 18 H -0.186 1.186 19 C -0.012 4.012 20 C -0.199 4.199 21 C -0.255 4.255 22 H 0.108 0.892 23 H 0.088 0.912 24 H 0.122 0.878 25 H 0.239 0.761 26 H 0.093 0.907 27 H 0.135 0.865 28 H 0.127 0.873 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.286 4.751 2.904 6.019 hybrid contribution -0.559 0.095 -0.039 0.568 sum 1.727 4.846 2.865 5.888 Atomic orbital electron populations 1.20527 0.85338 1.04596 1.04350 1.23159 0.98746 0.86441 0.97267 1.73721 0.89337 1.24445 1.22149 1.84735 1.22170 1.23697 1.67061 1.25918 1.00156 0.83218 0.96079 1.34990 0.98916 1.30962 1.18450 1.10012 0.72431 0.72747 0.76640 1.93293 1.49233 1.69874 1.87851 1.93423 1.58151 1.83786 1.57315 1.52286 1.12185 1.71054 1.25000 1.18894 0.79213 1.29421 1.15592 0.90005 1.25730 1.00222 0.93553 0.95856 1.69799 1.37208 1.12506 1.21528 0.86195 0.81039 0.80209 0.78458 1.20520 1.19665 1.18593 1.21403 0.97164 1.00072 0.82594 1.23053 1.00179 0.97388 0.99238 1.23359 1.01836 0.95564 1.04720 0.89216 0.91220 0.87766 0.76143 0.90734 0.86462 0.87293 0.89714 0.89771 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 10.17 36.01 0.37 -1.35 16 2 C 0.10 2.14 7.33 -82.10 -0.60 1.54 16 3 N -0.39 -7.70 12.07 33.42 0.40 -7.29 16 4 O 0.08 1.50 11.20 17.18 0.19 1.69 16 5 C 0.03 0.53 12.05 29.74 0.36 0.89 16 6 C -0.76 -15.94 6.38 -39.38 -0.25 -16.19 16 7 S 2.59 62.23 5.55 -107.50 -0.60 61.63 16 8 O -1.01 -25.61 16.67 -57.17 -0.95 -26.56 16 9 O -0.94 -25.16 13.37 -57.17 -0.76 -25.93 16 10 N -0.78 -17.85 3.01 -53.42 -0.16 -18.02 16 11 C -0.28 -6.50 7.47 -15.06 -0.11 -6.61 16 12 H 0.08 1.75 7.65 -52.48 -0.40 1.35 16 13 C 0.07 1.57 4.06 -17.43 -0.07 1.50 16 14 N -0.78 -20.25 11.72 55.49 0.65 -19.60 16 15 Si 0.92 18.62 29.39 -169.99 -5.00 13.62 16 16 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 17 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 18 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 19 C 0.10 1.93 6.32 -67.93 -0.43 1.50 16 20 C -0.16 -2.74 9.83 -26.73 -0.26 -3.00 16 21 C -0.21 -3.59 10.35 -26.73 -0.28 -3.86 16 22 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 23 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.10 2.17 6.99 -51.93 -0.36 1.80 16 25 H 0.22 3.06 8.06 -52.49 -0.42 2.64 16 26 H 0.28 6.97 8.32 -40.82 -0.34 6.63 16 27 H 0.12 2.33 7.46 -51.93 -0.39 1.94 16 28 H 0.11 1.97 6.90 -51.93 -0.36 1.61 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 LS Contribution 284.34 15.07 4.28 4.28 Total: -1.00 -29.69 284.34 -6.40 -36.09 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -3.18 Total: 5.67 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -1.28 Total: -25.58 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.89 Total: -44.91 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -1.53 Total: -50.80 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.00 Total: 13.62 kcal Atomic # 16 Polarization: 62.23 SS G_CDS: -0.60 Total: 61.63 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.69 -6.40 -36.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601321454.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.875 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds