Wall clock time and date at job start Mon Mar 30 2020 01:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30179 * 126.79994 * 2 1 4 4 O 1.20921 * 111.60256 * 180.25289 * 3 2 1 5 5 C 1.34040 * 111.56554 * 359.74465 * 4 3 2 6 6 C 1.35452 * 106.45024 * 0.02562 * 5 4 3 7 7 S 1.76199 * 128.00789 * 179.97438 * 6 5 4 8 8 O 1.42093 * 106.40246 * 1.48161 * 7 6 5 9 9 O 1.42099 * 106.39823 * 228.55986 * 7 6 5 10 10 N 1.65599 * 107.21656 * 115.02438 * 7 6 5 11 11 C 1.36933 * 120.00165 * 89.99783 * 10 7 6 12 12 H 1.08008 * 120.00035 * 231.54049 * 11 10 7 13 13 C 1.38809 * 120.00006 * 51.54323 * 11 10 7 14 14 N 1.31620 * 120.00160 * 23.27637 * 13 11 10 15 15 Si 1.86802 * 119.99938 * 203.27235 * 13 11 10 16 16 H 1.48508 * 109.46870 * 180.02562 * 15 13 11 17 17 H 1.48501 * 109.47147 * 299.99999 * 15 13 11 18 18 H 1.48494 * 109.47003 * 60.00068 * 15 13 11 19 19 C 1.46505 * 119.99824 * 269.99335 * 10 7 6 20 20 C 1.52996 * 117.49852 * 183.41862 * 19 10 7 21 21 C 1.53004 * 60.00258 * 252.51329 * 20 19 10 22 22 H 1.08998 * 109.46731 * 270.16522 * 1 2 3 23 23 H 1.08998 * 109.47182 * 30.16335 * 1 2 3 24 24 H 1.08999 * 109.47235 * 150.16488 * 1 2 3 25 25 H 1.08001 * 126.77576 * 179.97438 * 5 4 3 26 26 H 0.97001 * 120.00569 * 174.95271 * 14 13 11 27 27 H 1.08994 * 115.55136 * 329.13124 * 19 10 7 28 28 H 1.08996 * 117.49945 * 359.97438 * 20 19 10 29 29 H 1.08997 * 117.50164 * 145.02447 * 20 19 10 30 30 H 1.09001 * 117.49772 * 252.51405 * 21 20 19 31 31 H 1.08997 * 117.49970 * 107.48484 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7254 -0.0050 5 6 3.6024 -0.6067 -0.0035 6 6 2.3539 -1.1320 0.0027 7 16 1.8923 -2.8325 0.0068 8 8 3.1024 -3.5767 0.0376 9 8 0.9120 -2.9845 -1.0106 10 7 1.1245 -3.1285 1.4439 11 6 -0.2321 -2.9699 1.5407 12 1 -0.6502 -2.3669 2.3333 13 6 -1.0702 -3.5841 0.6203 14 7 -0.6583 -4.6468 -0.0381 15 14 -2.7826 -2.9026 0.3161 16 1 -3.4716 -3.7328 -0.7045 17 1 -3.5585 -2.9303 1.5820 18 1 -2.6793 -1.5035 -0.1707 19 6 1.8968 -3.5601 2.6116 20 6 1.1211 -3.8947 3.8872 21 6 1.9522 -2.6124 3.8115 22 1 -0.3633 0.0030 1.0277 23 1 -0.3633 0.8885 -0.5164 24 1 -0.3633 -0.8914 -0.5113 25 1 4.5339 -1.1534 -0.0073 26 1 -1.2678 -5.1194 -0.6264 27 1 2.7874 -4.1498 2.3945 28 1 0.0362 -3.7933 3.8577 29 1 1.5012 -4.7048 4.5095 30 1 2.8792 -2.5789 4.3840 31 1 1.4142 -1.6678 3.7320 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601321454.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:25 Heat of formation + Delta-G solvation = 4.744134 kcal Electronic energy + Delta-G solvation = -20185.595261 eV Core-core repulsion = 16984.302022 eV Total energy + Delta-G solvation = -3201.293239 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.98105 -38.76219 -37.65496 -36.15611 -35.79035 -35.09171 -32.88236 -32.43915 -29.64615 -26.78573 -24.76449 -22.98893 -22.47922 -22.09310 -20.70083 -19.60261 -18.74540 -18.26769 -17.68986 -17.14266 -16.80450 -16.15687 -15.63786 -15.30977 -15.13133 -14.26628 -14.19314 -14.01893 -13.53008 -13.50482 -13.10405 -12.92969 -12.62802 -12.46095 -12.43478 -12.28882 -12.11382 -12.05078 -11.77116 -11.56703 -11.34656 -10.90540 -10.74714 -10.53191 -9.30460 -8.41212 -6.10325 0.00265 0.28208 0.91696 1.52363 1.58526 1.62392 2.21113 2.35154 2.78633 3.03581 3.07207 3.23251 3.44639 3.62888 3.87871 4.18582 4.30284 4.41244 4.43299 4.52836 4.60933 4.65228 4.81497 4.93241 4.97223 5.22782 5.29691 5.49033 5.56490 5.82858 6.30584 7.03205 7.10817 7.46147 8.64307 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.017376 B = 0.011070 C = 0.009132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.046601 B = 2528.852075 C = 3065.452435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.094 3.906 3 N -0.393 5.393 4 O 0.095 5.905 5 C 0.056 3.944 6 C -0.789 4.789 7 S 2.588 3.412 8 O -1.036 7.036 9 O -0.976 6.976 10 N -0.791 5.791 11 C -0.277 4.277 12 H 0.097 0.903 13 C 0.028 3.972 14 N -0.821 5.821 15 Si 0.959 3.041 16 H -0.290 1.290 17 H -0.249 1.249 18 H -0.250 1.250 19 C 0.056 3.944 20 C -0.149 4.149 21 C -0.188 4.188 22 H 0.103 0.897 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.260 0.740 26 H 0.279 0.721 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.212 5.321 5.540 7.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.067 4.067 3 N -0.103 5.103 4 O 0.036 5.964 5 C -0.028 4.028 6 C -0.870 4.870 7 S 2.688 3.312 8 O -1.025 7.025 9 O -0.965 6.965 10 N -0.614 5.614 11 C -0.425 4.425 12 H 0.115 0.885 13 C -0.188 4.188 14 N -0.457 5.457 15 Si 0.781 3.219 16 H -0.216 1.216 17 H -0.173 1.173 18 H -0.174 1.174 19 C -0.053 4.053 20 C -0.188 4.188 21 C -0.228 4.228 22 H 0.121 0.879 23 H 0.109 0.891 24 H 0.100 0.900 25 H 0.276 0.724 26 H 0.088 0.912 27 H 0.129 0.871 28 H 0.117 0.883 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.478 6.122 4.520 8.003 hybrid contribution -0.508 -0.298 -0.493 0.768 sum 1.969 5.824 4.027 7.349 Atomic orbital electron populations 1.20568 0.84701 1.04531 1.05189 1.23391 0.99515 0.86362 0.97394 1.73708 0.89722 1.24314 1.22549 1.84727 1.21535 1.23758 1.66401 1.26544 1.00536 0.82844 0.92858 1.34642 1.00732 1.30000 1.21651 1.09666 0.71725 0.73249 0.76566 1.93242 1.49940 1.71156 1.88205 1.93369 1.59197 1.84933 1.59004 1.52222 1.12342 1.71363 1.25506 1.19201 0.79365 1.28606 1.15325 0.88542 1.26545 1.03469 0.93297 0.95457 1.69897 1.38484 1.14343 1.23026 0.85527 0.77524 0.79878 0.78976 1.21627 1.17322 1.17427 1.21628 0.97890 1.02976 0.82763 1.23134 0.99612 0.98712 0.97330 1.23381 1.02715 0.94811 1.01845 0.87909 0.89066 0.89966 0.72434 0.91154 0.87124 0.88330 0.87106 0.86864 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.39 10.17 71.24 0.72 -2.66 16 2 C 0.09 3.73 7.33 43.58 0.32 4.05 16 3 N -0.39 -14.86 12.07 -49.55 -0.60 -15.46 16 4 O 0.09 3.21 11.20 71.64 0.80 4.01 16 5 C 0.06 1.86 12.05 67.18 0.81 2.67 16 6 C -0.79 -32.49 6.38 22.40 0.14 -32.34 16 7 S 2.59 125.47 5.55 -56.49 -0.31 125.16 16 8 O -1.04 -52.82 16.67 -128.00 -2.13 -54.95 16 9 O -0.98 -53.73 13.37 -128.00 -1.71 -55.44 16 10 N -0.79 -35.89 3.01 -322.93 -0.97 -36.86 16 11 C -0.28 -12.55 7.47 84.03 0.63 -11.93 16 12 H 0.10 3.99 7.65 -2.91 -0.02 3.97 16 13 C 0.03 1.32 4.06 84.86 0.34 1.67 16 14 N -0.82 -43.96 11.72 21.65 0.25 -43.71 16 15 Si 0.96 37.49 29.39 68.60 2.02 39.51 16 16 H -0.29 -11.76 7.11 99.48 0.71 -11.06 16 17 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 18 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 19 C 0.06 2.16 6.32 44.99 0.28 2.45 16 20 C -0.15 -4.78 9.83 30.59 0.30 -4.48 16 21 C -0.19 -5.74 10.35 30.60 0.32 -5.42 16 22 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 23 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 24 H 0.08 3.40 6.99 -2.39 -0.02 3.38 16 25 H 0.26 6.35 8.06 -2.91 -0.02 6.33 16 26 H 0.28 14.29 8.32 -92.71 -0.77 13.52 16 27 H 0.11 4.37 7.46 -2.39 -0.02 4.35 16 28 H 0.10 3.39 6.90 -2.39 -0.02 3.37 16 29 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -64.26 284.34 2.37 -61.89 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 1.16 Total: 21.87 kcal Atomic # 6 Polarization: -49.88 SS G_CDS: 3.87 Total: -46.01 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -1.32 Total: -96.03 kcal Atomic # 8 Polarization: -103.34 SS G_CDS: -3.04 Total: -106.39 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.02 Total: 39.51 kcal Atomic # 16 Polarization: 125.47 SS G_CDS: -0.31 Total: 125.16 kcal Total: -64.26 2.37 -61.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601321454.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.633 kcal (2) G-P(sol) polarization free energy of solvation -64.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds