Wall clock time and date at job start Mon Mar 30 2020 01:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31447 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48495 * 109.47180 * 269.99932 * 3 2 1 5 5 H 1.48509 * 109.47023 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47132 * 149.99545 * 3 2 1 7 7 C 1.38750 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00121 * 359.97438 * 7 2 1 9 9 O 1.34922 * 119.99862 * 180.02562 * 7 2 1 10 10 C 1.34312 * 116.99756 * 179.97438 * 9 7 2 11 11 O 1.21213 * 120.00501 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99925 * 179.97438 * 10 9 7 13 13 C 1.50708 * 109.47325 * 180.02562 * 12 10 9 14 14 C 1.38163 * 120.02715 * 265.02667 * 13 12 10 15 15 C 1.38243 * 120.05438 * 179.97438 * 14 13 12 16 16 C 1.38289 * 120.11362 * 359.97438 * 15 14 13 17 17 C 1.38125 * 120.05159 * 0.02562 * 16 15 14 18 18 C 1.38708 * 120.02785 * 85.00178 * 13 12 10 19 19 O 1.35899 * 120.05461 * 359.97438 * 18 13 12 20 20 C 1.42903 * 116.99930 * 180.02562 * 19 18 13 21 21 F 1.39895 * 109.47392 * 300.00490 * 20 19 18 22 22 F 1.39899 * 109.46826 * 60.00682 * 20 19 18 23 23 H 0.96995 * 120.00032 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47137 * 60.00071 * 12 10 9 25 25 H 1.08999 * 109.47280 * 300.00260 * 12 10 9 26 26 H 1.08001 * 119.97024 * 359.97438 * 14 13 12 27 27 H 1.08004 * 119.94070 * 180.02562 * 15 14 13 28 28 H 1.07993 * 119.96940 * 180.28495 * 16 15 14 29 29 H 1.08000 * 120.02364 * 180.02562 * 17 16 15 30 30 H 1.08998 * 109.46876 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4960 2.0464 -1.4000 5 1 1.4459 2.6527 0.7001 6 1 3.5460 1.4402 0.7001 7 6 2.0082 -1.2016 0.0005 8 1 1.4682 -2.1369 0.0014 9 8 3.3574 -1.2016 0.0011 10 6 3.9672 -2.3983 0.0021 11 8 3.3071 -3.4149 0.0030 12 6 5.4721 -2.4772 0.0022 13 6 5.8994 -3.9224 0.0028 14 6 6.1949 -4.5555 1.1947 15 6 6.5865 -5.8813 1.1960 16 6 6.6829 -6.5774 0.0050 17 6 6.3886 -5.9489 -1.1893 18 6 5.9960 -4.6182 -1.1933 19 8 5.7049 -3.9980 -2.3669 20 6 5.8255 -4.7763 -3.5593 21 9 7.1429 -5.2285 -3.6898 22 9 4.9605 -5.8735 -3.4895 23 1 -0.4850 0.8400 -0.0004 24 1 5.8618 -1.9823 0.8917 25 1 5.8618 -1.9838 -0.8882 26 1 6.1199 -4.0141 2.1262 27 1 6.8166 -6.3745 2.1289 28 1 6.9846 -7.6143 0.0091 29 1 6.4637 -6.4931 -2.1191 30 1 5.5645 -4.1627 -4.4216 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735731935.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:40 Heat of formation + Delta-G solvation = -220.235641 kcal Electronic energy + Delta-G solvation = -20780.369494 eV Core-core repulsion = 16983.187262 eV Total energy + Delta-G solvation = -3797.182232 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.069 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.35652 -48.34670 -41.52737 -40.69181 -38.47501 -37.36203 -34.49902 -33.95070 -31.31687 -29.40860 -27.29437 -26.94449 -23.61870 -23.26246 -21.57243 -20.14266 -19.90107 -19.01953 -18.94839 -18.57187 -17.31429 -17.08755 -16.76874 -16.61525 -15.88983 -15.76500 -15.53442 -15.01400 -14.91593 -14.68754 -14.51909 -14.23142 -14.02229 -13.94453 -13.62279 -13.42876 -12.91639 -12.89744 -12.40324 -12.26611 -12.22458 -11.95348 -11.83602 -11.13148 -10.81835 -9.91628 -9.38789 -8.52897 -6.39892 0.23088 0.33585 1.32639 1.35529 1.55496 1.61322 1.63275 2.28702 2.38926 2.48911 2.89369 2.92874 3.45504 3.58542 3.67042 3.76334 3.99889 4.18404 4.29503 4.44755 4.50074 4.55062 4.68888 4.97137 5.20778 5.36217 5.48841 5.51064 5.61895 5.91015 6.07264 6.57332 6.84752 7.62469 8.60433 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.023051 B = 0.005426 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.412884 B = 5159.286217 C = 5705.943380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.014 3.986 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.247 1.247 7 C -0.407 4.407 8 H 0.052 0.948 9 O -0.259 6.259 10 C 0.415 3.585 11 O -0.570 6.570 12 C -0.051 4.051 13 C -0.108 4.108 14 C -0.082 4.082 15 C -0.144 4.144 16 C -0.085 4.085 17 C -0.207 4.207 18 C 0.101 3.899 19 O -0.335 6.335 20 C 0.406 3.594 21 F -0.202 7.202 22 F -0.212 7.212 23 H 0.289 0.711 24 H 0.139 0.861 25 H 0.123 0.877 26 H 0.150 0.850 27 H 0.160 0.840 28 H 0.157 0.843 29 H 0.136 0.864 30 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.797 -7.584 -3.513 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.170 1.170 7 C -0.483 4.483 8 H 0.070 0.930 9 O -0.169 6.169 10 C 0.262 3.738 11 O -0.465 6.465 12 C -0.088 4.088 13 C -0.109 4.109 14 C -0.099 4.099 15 C -0.161 4.161 16 C -0.102 4.102 17 C -0.225 4.225 18 C 0.058 3.942 19 O -0.253 6.253 20 C 0.317 3.683 21 F -0.184 7.184 22 F -0.194 7.194 23 H 0.099 0.901 24 H 0.157 0.843 25 H 0.141 0.859 26 H 0.168 0.832 27 H 0.177 0.823 28 H 0.175 0.825 29 H 0.153 0.847 30 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 18.374 -7.586 -3.551 20.194 hybrid contribution -0.592 -0.099 -0.268 0.657 sum 17.782 -7.686 -3.819 19.745 Atomic orbital electron populations 1.69718 1.07686 1.30179 1.48512 1.25614 0.95988 1.02817 0.94163 0.85048 0.79096 0.75511 0.79863 1.18399 1.19102 1.17017 1.20282 0.77906 0.95589 1.54522 0.92960 1.83531 1.21833 1.32806 1.78728 1.24258 0.92705 0.81271 0.75550 1.90595 1.68549 1.37430 1.49967 1.20103 0.85581 0.95066 1.08045 1.18930 1.04760 0.95518 0.91712 1.21274 0.96285 0.95794 0.96590 1.21474 1.01218 0.93931 0.99522 1.21351 0.96749 1.00995 0.91141 1.21652 1.06288 0.93113 1.01477 1.18924 0.97773 0.92458 0.85053 1.86620 1.83819 1.40904 1.13955 1.24145 0.72697 0.80968 0.90489 1.93065 1.38921 1.90546 1.95869 1.93068 1.70772 1.58924 1.96655 0.90147 0.84287 0.85875 0.83210 0.82278 0.82499 0.84655 0.75657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.56 13.96 21.62 0.30 -56.26 16 2 C 0.01 0.79 5.49 84.87 0.47 1.26 16 3 Si 0.99 43.74 28.62 68.60 1.96 45.70 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.41 -25.59 10.10 67.94 0.69 -24.90 16 8 H 0.05 3.77 7.09 -2.91 -0.02 3.75 16 9 O -0.26 -14.04 8.58 14.85 0.13 -13.92 16 10 C 0.42 20.18 7.90 71.23 0.56 20.74 16 11 O -0.57 -32.43 15.27 20.76 0.32 -32.11 16 12 C -0.05 -1.71 5.66 29.10 0.16 -1.54 16 13 C -0.11 -3.53 4.39 -19.77 -0.09 -3.61 16 14 C -0.08 -2.21 9.68 22.25 0.22 -1.99 16 15 C -0.14 -3.26 10.04 22.28 0.22 -3.03 16 16 C -0.08 -1.97 10.04 22.25 0.22 -1.75 16 17 C -0.21 -5.84 8.26 22.36 0.18 -5.65 16 18 C 0.10 3.29 6.45 22.50 0.15 3.44 16 19 O -0.34 -10.42 9.57 -92.41 -0.88 -11.30 16 20 C 0.41 9.14 5.98 113.37 0.68 9.82 16 21 F -0.20 -4.44 15.58 44.97 0.70 -3.74 16 22 F -0.21 -5.82 15.58 44.97 0.70 -5.12 16 23 H 0.29 15.94 8.31 -92.71 -0.77 15.17 16 24 H 0.14 3.63 8.05 -2.39 -0.02 3.62 16 25 H 0.12 3.67 7.69 -2.39 -0.02 3.65 16 26 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 27 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 28 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 29 H 0.14 3.55 5.10 -2.91 -0.01 3.54 16 30 H 0.23 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -81.25 281.02 7.88 -73.37 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 1.19 Total: 10.59 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 3.46 Total: -7.22 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.30 Total: -56.26 kcal Atomic # 8 Polarization: -56.89 SS G_CDS: -0.44 Total: -57.33 kcal Atomic # 9 Polarization: -10.26 SS G_CDS: 1.40 Total: -8.86 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.96 Total: 45.70 kcal Total: -81.25 7.88 -73.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735731935.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.867 kcal (2) G-P(sol) polarization free energy of solvation -81.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds