Wall clock time and date at job start Mon Mar 30 2020 01:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47197 * 2 1 4 4 C 1.50696 * 109.46999 * 240.00423 * 2 1 3 5 5 H 1.07999 * 119.99822 * 239.99947 * 4 2 1 6 6 C 1.37876 * 120.00339 * 59.99801 * 4 2 1 7 7 N 1.31514 * 119.99769 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00300 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47118 * 89.99838 * 8 6 4 10 10 H 1.48499 * 109.47293 * 209.99842 * 8 6 4 11 11 H 1.48504 * 109.47104 * 330.00087 * 8 6 4 12 12 C 1.52993 * 109.47392 * 119.99957 * 2 1 3 13 13 N 1.46496 * 109.47551 * 300.00334 * 12 2 1 14 14 C 1.34777 * 120.00258 * 180.02562 * 13 12 2 15 15 O 1.21579 * 119.99978 * 359.97438 * 14 13 12 16 16 C 1.47526 * 120.00024 * 179.97438 * 14 13 12 17 17 C 1.36780 * 126.92906 * 179.97438 * 16 14 13 18 18 C 1.41406 * 103.83988 * 180.02562 * 17 16 14 19 19 Cl 1.73593 * 126.72769 * 180.02562 * 18 17 16 20 20 N 1.30226 * 106.54982 * 0.02562 * 18 17 16 21 21 O 1.20890 * 111.95672 * 359.69454 * 20 18 17 22 22 H 1.09002 * 109.47097 * 299.99802 * 1 2 3 23 23 H 1.09001 * 109.47142 * 59.99766 * 1 2 3 24 24 H 1.08996 * 109.46698 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47061 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47061 * 300.00893 * 3 2 1 27 27 H 1.09002 * 109.46935 * 60.00099 * 3 2 1 28 28 H 0.97005 * 120.00032 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47250 * 180.02562 * 12 2 1 30 30 H 1.09004 * 109.46862 * 60.00135 * 12 2 1 31 31 H 0.96999 * 119.99694 * 359.97438 * 13 12 2 32 32 H 1.08000 * 128.08184 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1193 -4.0080 9 1 1.3448 -2.1614 -4.4125 10 1 2.4871 -0.1400 -5.1121 11 1 3.6309 -1.7563 -3.7121 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8779 -0.4909 3.6695 15 8 2.5769 -1.4794 3.7809 16 6 1.3866 0.2048 4.8740 17 6 1.6282 -0.1367 6.1763 18 6 0.9331 0.8461 6.9183 19 17 0.8450 0.9720 8.6474 20 7 0.3721 1.6383 6.0503 21 8 0.6136 1.3065 4.9132 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 0.7080 1.1610 -3.4844 29 1 3.1301 -0.7208 1.2494 30 1 1.6767 -1.7489 1.2491 31 1 0.9944 0.7581 2.3564 32 1 2.2132 -0.9639 6.5505 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823518488.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:42 Heat of formation + Delta-G solvation = 16.628625 kcal Electronic energy + Delta-G solvation = -18479.929222 eV Core-core repulsion = 15277.107626 eV Total energy + Delta-G solvation = -3202.821595 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.071 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.37534 -39.51030 -37.43196 -36.57065 -34.06805 -33.48946 -32.26962 -30.84950 -26.19583 -25.78614 -25.28717 -23.83216 -23.50772 -20.95391 -19.17592 -18.64095 -18.15367 -16.54128 -15.98144 -15.47541 -15.32785 -14.95627 -14.64742 -13.99131 -13.61316 -13.07905 -13.01197 -12.94880 -12.65401 -12.28868 -11.47865 -11.38412 -11.25868 -10.92799 -10.74827 -10.46323 -10.35417 -10.33987 -10.15097 -10.02903 -9.71747 -9.43204 -8.86479 -8.71010 -8.41844 -6.07045 -4.17835 0.56256 1.12903 1.54730 2.43154 3.03849 3.25697 3.32336 3.33622 3.39217 4.03378 4.36100 4.44582 4.75116 4.92885 5.20021 5.41660 6.05288 6.17597 6.40129 6.51998 6.76878 6.76925 6.85245 6.93987 7.27018 7.47237 7.49196 7.64362 7.76668 7.94986 8.04982 8.19041 8.33651 8.82461 9.48543 10.94364 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.054085 B = 0.003544 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.578630 B = 7898.125654 C = 8224.635346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 C -0.134 4.134 4 C -0.509 4.509 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.128 3.872 13 N -0.693 5.693 14 C 0.591 3.409 15 O -0.518 6.518 16 C -0.055 4.055 17 C -0.147 4.147 18 C 0.051 3.949 19 Cl 0.028 6.972 20 N -0.330 5.330 21 O 0.137 5.863 22 H 0.007 0.993 23 H 0.087 0.913 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.087 0.913 27 H 0.007 0.993 28 H 0.261 0.739 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.407 0.593 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.710 1.028 15.716 15.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 C -0.191 4.191 4 C -0.547 4.547 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.007 3.993 13 N -0.343 5.343 14 C 0.373 3.627 15 O -0.395 6.395 16 C -0.121 4.121 17 C -0.171 4.171 18 C -0.132 4.132 19 Cl 0.056 6.944 20 N -0.031 5.031 21 O 0.061 5.939 22 H 0.026 0.974 23 H 0.106 0.894 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.106 0.894 27 H 0.026 0.974 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.243 0.757 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.059 1.526 15.890 15.998 hybrid contribution 0.443 -0.647 -0.415 0.887 sum -0.616 0.879 15.475 15.512 Atomic orbital electron populations 1.21863 0.97576 0.99350 1.00348 1.18382 0.92960 0.92860 0.90278 1.21860 0.98708 0.98216 1.00345 1.20947 1.31780 1.12231 0.89760 0.92303 1.24875 0.94799 0.94874 0.98892 1.69799 1.36455 1.22640 1.23359 0.86558 0.79327 0.79378 0.82531 1.20690 1.21258 1.19870 1.21966 0.98682 0.96087 0.82615 1.46334 1.51030 1.31486 1.05432 1.16536 0.81299 0.83708 0.81199 1.90868 1.38099 1.25096 1.85399 1.24602 0.98821 0.90948 0.97702 1.22704 1.02742 1.01580 0.90043 1.24045 1.02333 0.96685 0.90160 1.98416 1.97327 1.97674 1.00974 1.73870 1.18679 1.20909 0.89660 1.85084 1.51246 1.35634 1.21976 0.97356 0.89419 0.95277 0.95268 0.89426 0.97354 0.92909 0.91812 0.91811 0.75693 0.78955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 2 C 0.06 1.22 0.50 -155.66 -0.08 1.14 16 3 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 4 C -0.51 -12.72 8.01 -34.44 -0.28 -13.00 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -22.87 9.35 55.43 0.52 -22.35 16 8 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 C 0.13 2.48 4.50 -4.05 -0.02 2.46 16 13 N -0.69 -11.35 4.96 -61.36 -0.30 -11.65 16 14 C 0.59 9.36 7.82 -12.47 -0.10 9.26 16 15 O -0.52 -9.55 16.91 5.30 0.09 -9.46 16 16 C -0.05 -0.73 7.29 -36.32 -0.26 -0.99 16 17 C -0.15 -1.72 10.96 -38.90 -0.43 -2.14 16 18 C 0.05 0.60 7.97 -17.03 -0.14 0.47 16 19 Cl 0.03 0.27 29.33 -51.86 -1.52 -1.25 16 20 N -0.33 -4.41 12.05 32.82 0.40 -4.01 16 21 O 0.14 1.81 11.04 15.55 0.17 1.99 16 22 H 0.01 0.14 6.86 -51.93 -0.36 -0.21 16 23 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 27 H 0.01 0.14 6.86 -51.93 -0.36 -0.21 16 28 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.41 6.15 5.99 -40.82 -0.24 5.90 16 32 H 0.19 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 291.39 15.07 4.39 4.39 Total: -1.00 -26.17 291.39 -5.31 -31.48 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.24 Total: 2.09 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -0.79 Total: -6.31 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.61 Total: -38.01 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.26 Total: -7.48 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.25 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -26.17 -5.31 -31.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823518488.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.107 kcal (2) G-P(sol) polarization free energy of solvation -26.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds