Wall clock time and date at job start Mon Mar 30 2020 01:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47197 * 2 1 4 4 C 1.50696 * 109.46999 * 240.00423 * 2 1 3 5 5 H 1.07999 * 119.99822 * 239.99947 * 4 2 1 6 6 C 1.37876 * 120.00339 * 59.99801 * 4 2 1 7 7 N 1.31514 * 119.99769 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00300 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47118 * 89.99838 * 8 6 4 10 10 H 1.48499 * 109.47293 * 209.99842 * 8 6 4 11 11 H 1.48504 * 109.47104 * 330.00087 * 8 6 4 12 12 C 1.52993 * 109.47392 * 119.99957 * 2 1 3 13 13 N 1.46496 * 109.47551 * 300.00334 * 12 2 1 14 14 C 1.34777 * 120.00258 * 180.02562 * 13 12 2 15 15 O 1.21579 * 119.99978 * 359.97438 * 14 13 12 16 16 C 1.47526 * 120.00024 * 179.97438 * 14 13 12 17 17 C 1.36780 * 126.92906 * 179.97438 * 16 14 13 18 18 C 1.41406 * 103.83988 * 180.02562 * 17 16 14 19 19 Cl 1.73593 * 126.72769 * 180.02562 * 18 17 16 20 20 N 1.30226 * 106.54982 * 0.02562 * 18 17 16 21 21 O 1.20890 * 111.95672 * 359.69454 * 20 18 17 22 22 H 1.09002 * 109.47097 * 299.99802 * 1 2 3 23 23 H 1.09001 * 109.47142 * 59.99766 * 1 2 3 24 24 H 1.08996 * 109.46698 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47061 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47061 * 300.00893 * 3 2 1 27 27 H 1.09002 * 109.46935 * 60.00099 * 3 2 1 28 28 H 0.97005 * 120.00032 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47250 * 180.02562 * 12 2 1 30 30 H 1.09004 * 109.46862 * 60.00135 * 12 2 1 31 31 H 0.96999 * 119.99694 * 359.97438 * 13 12 2 32 32 H 1.08000 * 128.08184 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1193 -4.0080 9 1 1.3448 -2.1614 -4.4125 10 1 2.4871 -0.1400 -5.1121 11 1 3.6309 -1.7563 -3.7121 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8779 -0.4909 3.6695 15 8 2.5769 -1.4794 3.7809 16 6 1.3866 0.2048 4.8740 17 6 1.6282 -0.1367 6.1763 18 6 0.9331 0.8461 6.9183 19 17 0.8450 0.9720 8.6474 20 7 0.3721 1.6383 6.0503 21 8 0.6136 1.3065 4.9132 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 0.7080 1.1610 -3.4844 29 1 3.1301 -0.7208 1.2494 30 1 1.6767 -1.7489 1.2491 31 1 0.9944 0.7581 2.3564 32 1 2.2132 -0.9639 6.5505 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823518488.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:42 Heat of formation + Delta-G solvation = 1.351368 kcal Electronic energy + Delta-G solvation = -18480.591693 eV Core-core repulsion = 15277.107626 eV Total energy + Delta-G solvation = -3203.484067 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.36480 -40.86703 -38.28475 -38.19069 -35.29474 -34.80490 -33.47698 -32.49734 -27.70706 -27.52969 -27.10968 -24.82726 -24.76171 -22.13125 -20.68827 -20.07167 -19.15911 -17.88157 -17.46306 -16.94275 -16.68706 -16.33213 -16.14908 -15.07040 -14.88926 -14.75803 -14.57104 -13.99618 -13.88737 -13.61128 -13.18868 -13.07499 -12.67759 -12.57656 -12.24743 -12.23383 -12.11167 -11.61164 -11.46025 -11.24878 -11.16240 -11.06386 -10.67782 -10.37813 -10.09309 -7.99257 -6.14973 -0.49135 0.24593 0.59882 1.33476 1.45760 1.49539 1.56769 1.81584 2.14692 2.49982 3.01990 3.25156 3.50493 3.74043 3.79123 4.40720 4.53434 4.55419 4.73948 4.98092 5.09284 5.10595 5.22982 5.23861 5.53774 5.70344 5.71321 6.18050 6.22631 6.28540 6.45522 6.65534 6.87249 6.94244 7.53146 8.99571 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.054085 B = 0.003544 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.578630 B = 7898.125654 C = 8224.635346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.050 3.950 3 C -0.125 4.125 4 C -0.526 4.526 5 H 0.050 0.950 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.944 3.056 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.144 3.856 13 N -0.691 5.691 14 C 0.601 3.399 15 O -0.545 6.545 16 C -0.066 4.066 17 C -0.128 4.128 18 C 0.051 3.949 19 Cl 0.049 6.951 20 N -0.343 5.343 21 O 0.135 5.865 22 H 0.036 0.964 23 H 0.061 0.939 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.259 0.741 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.414 0.586 32 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.711 1.029 17.262 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 C -0.183 4.183 4 C -0.565 4.565 5 H 0.069 0.931 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.021 3.979 13 N -0.341 5.341 14 C 0.384 3.616 15 O -0.423 6.423 16 C -0.132 4.132 17 C -0.151 4.151 18 C -0.132 4.132 19 Cl 0.077 6.923 20 N -0.044 5.044 21 O 0.058 5.942 22 H 0.055 0.945 23 H 0.080 0.920 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.252 0.748 32 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -1.069 1.538 17.448 17.548 hybrid contribution 0.432 -0.631 -0.781 1.093 sum -0.637 0.906 16.667 16.704 Atomic orbital electron populations 1.21714 0.97198 0.98931 1.00417 1.18375 0.93228 0.93047 0.90383 1.21711 0.98221 0.97908 1.00414 1.21279 1.31682 1.12245 0.91305 0.93123 1.25447 0.95193 0.95545 1.01013 1.69918 1.37046 1.23343 1.23537 0.85775 0.78747 0.78400 0.79961 1.20632 1.21242 1.19816 1.21530 0.98015 0.95534 0.82832 1.46118 1.51353 1.31651 1.04977 1.16589 0.80414 0.83175 0.81401 1.90857 1.39234 1.26321 1.85917 1.24089 1.00266 0.91745 0.97119 1.23004 1.01475 1.01395 0.89200 1.24226 1.01646 0.96183 0.91153 1.98430 1.97192 1.97575 0.99086 1.73858 1.19180 1.21454 0.89913 1.85078 1.51405 1.35582 1.22096 0.94523 0.92016 0.95876 0.95856 0.92024 0.94521 0.93137 0.92659 0.92640 0.74834 0.76848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 2 C 0.05 2.18 0.50 -52.93 -0.03 2.16 16 3 C -0.12 -5.28 8.08 71.98 0.58 -4.69 16 4 C -0.53 -26.45 8.01 25.60 0.21 -26.25 16 5 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 6 C 0.03 1.42 5.15 84.65 0.44 1.85 16 7 N -0.90 -46.88 9.35 21.45 0.20 -46.68 16 8 Si 0.94 41.36 29.54 68.60 2.03 43.38 16 9 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 C 0.14 5.48 4.50 86.38 0.39 5.87 16 13 N -0.69 -21.65 4.96 -466.31 -2.31 -23.96 16 14 C 0.60 18.13 7.82 86.69 0.68 18.81 16 15 O -0.54 -19.44 16.91 -3.96 -0.07 -19.50 16 16 C -0.07 -1.64 7.29 24.38 0.18 -1.46 16 17 C -0.13 -2.65 10.96 22.71 0.25 -2.40 16 18 C 0.05 1.08 7.97 85.71 0.68 1.76 16 19 Cl 0.05 0.83 29.33 -2.72 -0.08 0.75 16 20 N -0.34 -8.42 12.05 -51.03 -0.61 -9.03 16 21 O 0.13 3.30 11.04 65.83 0.73 4.03 16 22 H 0.04 1.30 6.86 -2.39 -0.02 1.28 16 23 H 0.06 2.96 6.07 -2.39 -0.01 2.94 16 24 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.02 0.96 8.14 -2.39 -0.02 0.95 16 26 H 0.06 2.95 6.07 -2.39 -0.01 2.94 16 27 H 0.04 1.30 6.86 -2.39 -0.02 1.28 16 28 H 0.26 13.09 8.31 -92.70 -0.77 12.32 16 29 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.41 11.72 5.99 -92.71 -0.56 11.16 16 32 H 0.21 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -54.77 291.39 4.44 -50.32 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.61 Total: 9.74 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 3.95 Total: -9.04 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -2.72 Total: -79.67 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.66 Total: -15.47 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 17 Polarization: 0.83 SS G_CDS: -0.08 Total: 0.75 kcal Total: -54.77 4.44 -50.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823518488.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.673 kcal (2) G-P(sol) polarization free energy of solvation -54.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds