Wall clock time and date at job start Mon Mar 30 2020 01:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47112 * 59.99775 * 9 7 5 11 11 H 1.48497 * 109.47325 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47038 * 300.00131 * 9 7 5 13 13 O 1.45194 * 109.46709 * 294.99556 * 3 2 1 14 14 C 1.34737 * 117.00044 * 90.00265 * 13 3 2 15 15 O 1.21494 * 119.99448 * 0.02562 * 14 13 3 16 16 C 1.47580 * 120.00188 * 179.97438 * 14 13 3 17 17 C 1.41528 * 126.45929 * 179.71380 * 16 14 13 18 18 C 1.35510 * 105.52011 * 179.84290 * 17 16 14 19 19 Cl 1.73599 * 126.44105 * 180.14047 * 18 17 16 20 20 N 1.35619 * 107.12399 * 0.41400 * 18 17 16 21 21 C 1.46498 * 124.93562 * 179.76267 * 20 18 17 22 22 N 1.28478 * 110.13384 * 359.72525 * 20 18 17 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 29 29 H 1.07999 * 127.24262 * 359.97438 * 17 16 14 30 30 H 1.09000 * 109.47230 * 269.98388 * 21 20 18 31 31 H 1.09006 * 109.46935 * 29.98052 * 21 20 18 32 32 H 1.09002 * 109.47441 * 149.98300 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4995 2.2816 1.3821 11 1 6.3978 0.2179 2.6510 12 1 6.5975 0.1473 0.2350 13 8 1.6559 2.0916 -1.2407 14 6 0.4683 2.7278 -1.2562 15 8 -0.2270 2.7402 -0.2600 16 6 0.0127 3.4104 -2.4827 17 6 -1.2051 4.1112 -2.6522 18 6 -1.1866 4.5669 -3.9283 19 17 -2.4235 5.5039 -4.7066 20 7 -0.0230 4.1483 -4.4849 21 6 0.3943 4.4221 -5.8623 22 7 0.6607 3.4775 -3.6287 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0610 2.9499 29 1 -1.9843 4.2546 -1.9183 30 1 0.0381 3.6251 -6.5151 31 1 -0.0270 5.3734 -6.1873 32 1 1.4822 4.4714 -5.9094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835341618.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:20 Heat of formation + Delta-G solvation = -14.930112 kcal Electronic energy + Delta-G solvation = -18622.146591 eV Core-core repulsion = 15417.956506 eV Total energy + Delta-G solvation = -3204.190085 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.071 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.72119 -39.31577 -37.14644 -35.75618 -33.72115 -33.37384 -31.31421 -30.60951 -27.99832 -27.05445 -23.92894 -22.80474 -21.59875 -20.49027 -19.42546 -17.96035 -16.71018 -16.64454 -16.48982 -15.38576 -15.10508 -14.48187 -14.26498 -14.22417 -13.28446 -13.04249 -12.86218 -12.78335 -12.40332 -12.01230 -11.89016 -11.43258 -11.29943 -11.16036 -10.92179 -10.83011 -10.61540 -10.26059 -9.88172 -9.68796 -9.34060 -9.26186 -9.12982 -8.76934 -8.40994 -6.14228 -4.20776 1.27250 1.48812 1.85833 2.35013 3.29861 3.32935 3.35335 3.63015 3.65425 4.19330 4.37932 4.79319 4.94281 5.07920 5.10178 5.17699 5.43271 5.75279 6.16972 6.27920 6.32931 6.37855 6.51527 6.91376 7.00178 7.21194 7.25822 7.63493 7.69507 7.77553 7.96703 8.19434 8.65767 8.92537 9.43834 10.92640 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.031169 B = 0.004349 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.108963 B = 6437.267042 C = 6969.836521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.049 0.951 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.912 3.088 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.338 6.338 14 C 0.542 3.458 15 O -0.503 6.503 16 C 0.018 3.982 17 C -0.148 4.148 18 C 0.041 3.959 19 Cl -0.001 7.001 20 N -0.280 5.280 21 C 0.082 3.918 22 N -0.209 5.209 23 H 0.033 0.967 24 H 0.031 0.969 25 H 0.054 0.946 26 H 0.110 0.890 27 H 0.042 0.958 28 H 0.267 0.733 29 H 0.175 0.825 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.049 8.142 -14.876 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.252 6.252 14 C 0.383 3.617 15 O -0.390 6.390 16 C -0.140 4.140 17 C -0.177 4.177 18 C -0.108 4.108 19 Cl 0.027 6.973 20 N -0.072 5.072 21 C -0.058 4.058 22 N -0.046 5.046 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.128 0.872 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.193 0.807 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.281 7.781 -15.068 18.872 hybrid contribution -0.004 0.308 0.363 0.476 sum -8.285 8.089 -14.705 18.717 Atomic orbital electron populations 1.21872 0.98357 0.99093 1.00798 1.22029 0.92671 0.99259 1.03445 1.20768 0.95137 0.88838 0.78419 0.93286 1.21007 0.89595 1.38965 1.06257 0.91297 1.24869 0.99188 0.94762 0.95039 1.69880 1.35433 1.37838 1.09471 0.86338 0.83934 0.78469 0.77414 1.20013 1.21055 1.19951 1.86625 1.32774 1.61813 1.44029 1.19335 0.81279 0.76392 0.84696 1.90817 1.55842 1.58779 1.33597 1.21086 0.94781 1.05434 0.92678 1.21442 0.99570 1.02013 0.94645 1.21980 0.89119 1.06003 0.93658 1.98387 1.48301 1.70015 1.80594 1.45797 1.12054 1.37275 1.12070 1.22273 1.04110 1.03321 0.76076 1.73975 1.20196 1.11217 0.99244 0.94750 0.94951 0.92698 0.87221 0.93890 0.92351 0.80718 0.89168 0.88573 0.87643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.56 37.16 0.32 -2.91 16 2 C -0.14 -3.45 5.49 -26.73 -0.15 -3.59 16 3 C 0.22 6.00 2.25 -27.88 -0.06 5.93 16 4 H 0.05 1.45 7.16 -51.93 -0.37 1.08 16 5 C -0.52 -14.81 8.90 -34.44 -0.31 -15.11 16 6 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 7 C 0.06 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -25.19 11.29 55.43 0.63 -24.57 16 9 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 O -0.34 -8.49 9.81 -40.59 -0.40 -8.89 16 14 C 0.54 12.18 6.42 34.54 0.22 12.41 16 15 O -0.50 -11.94 14.11 -19.26 -0.27 -12.21 16 16 C 0.02 0.34 7.16 -82.81 -0.59 -0.25 16 17 C -0.15 -2.23 10.79 -39.30 -0.42 -2.65 16 18 C 0.04 0.52 7.46 -16.85 -0.13 0.39 16 19 Cl 0.00 -0.01 28.70 -51.86 -1.49 -1.50 16 20 N -0.28 -3.60 3.72 -64.74 -0.24 -3.84 16 21 C 0.08 0.61 11.16 59.85 0.67 1.27 16 22 N -0.21 -3.58 11.98 33.40 0.40 -3.18 16 23 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.03 0.71 6.06 -51.93 -0.31 0.39 16 25 H 0.05 1.27 7.79 -51.93 -0.40 0.86 16 26 H 0.11 2.98 5.95 -51.93 -0.31 2.67 16 27 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.18 2.33 8.06 -52.49 -0.42 1.91 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.48 7.73 -51.93 -0.40 0.08 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 295.39 15.07 4.45 4.45 Total: -1.00 -31.75 295.39 -5.95 -37.70 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -3.46 Total: -1.35 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -0.55 Total: -2.85 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.79 Total: -31.59 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.67 Total: -21.10 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -1.49 Total: -1.50 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.75 -5.95 -37.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341618.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.768 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds