Wall clock time and date at job start Mon Mar 30 2020 01:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46981 * 125.37015 * 3 2 1 5 5 C 1.37102 * 120.00044 * 87.88132 * 4 3 2 6 6 H 1.08003 * 120.00192 * 172.53731 * 5 4 3 7 7 C 1.38952 * 119.99820 * 352.53941 * 5 4 3 8 8 N 1.31404 * 120.00094 * 335.39807 * 7 5 4 9 9 Si 1.86799 * 119.99879 * 155.40375 * 7 5 4 10 10 H 1.48501 * 109.47251 * 84.89261 * 9 7 5 11 11 H 1.48506 * 109.47127 * 324.88954 * 9 7 5 12 12 H 1.48499 * 109.47241 * 204.89108 * 9 7 5 13 13 C 1.34775 * 120.00255 * 267.87986 * 4 3 2 14 14 O 1.21295 * 120.00464 * 179.97438 * 13 4 3 15 15 C 1.50700 * 119.99923 * 0.02562 * 13 4 3 16 16 H 1.09003 * 109.34619 * 318.25693 * 15 13 4 17 17 C 1.54066 * 109.35916 * 77.89965 * 15 13 4 18 18 C 1.55601 * 104.29273 * 165.38373 * 17 15 13 19 19 S 1.83459 * 100.72621 * 322.08232 * 18 17 15 20 20 O 1.42097 * 111.24826 * 270.72994 * 19 18 17 21 21 O 1.42097 * 111.35633 * 131.51400 * 19 18 17 22 22 N 1.47059 * 109.35673 * 198.54694 * 15 13 4 23 23 H 4.40637 * 5.51438 * 179.97438 * 4 1 2 24 24 H 1.08991 * 109.47517 * 5.37147 * 3 2 1 25 25 H 1.09003 * 109.47166 * 245.36828 * 3 2 1 26 26 H 0.97002 * 120.00495 * 180.02562 * 8 7 5 27 27 H 1.08992 * 110.47089 * 284.08795 * 17 15 13 28 28 H 1.08999 * 110.46086 * 46.68169 * 17 15 13 29 29 H 1.09005 * 111.16468 * 204.22036 * 18 17 15 30 30 H 1.08991 * 111.20921 * 79.96719 * 18 17 15 31 31 H 0.97002 * 126.30269 * 30.81514 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8004 -1.1263 5 6 3.3204 2.1506 -0.9784 6 1 3.7922 2.7200 -1.7656 7 6 2.9025 2.7865 0.1842 8 7 1.9390 2.2639 0.9089 9 14 3.7104 4.3842 0.7170 10 1 3.0566 5.5242 0.0254 11 1 5.1524 4.3518 0.3634 12 1 3.5645 4.5469 2.1859 13 6 3.3995 0.2089 -2.3078 14 8 3.8031 0.8711 -3.2405 15 6 3.1940 -1.2751 -2.4706 16 1 3.5549 -1.7894 -1.5799 17 6 1.6921 -1.5657 -2.6530 18 6 1.6453 -3.0285 -3.1816 19 16 3.1086 -3.0387 -4.2880 20 8 2.7609 -2.6357 -5.6056 21 8 3.9319 -4.1714 -4.0467 22 7 3.9462 -1.7456 -3.6434 23 1 -1.0501 -0.0003 0.0001 24 1 3.0098 -1.0222 -0.0962 25 1 3.0091 0.4291 0.9342 26 1 1.6469 2.7079 1.7204 27 1 1.1703 -1.4883 -1.6993 28 1 1.2577 -0.8826 -3.3828 29 1 0.7282 -3.2159 -3.7403 30 1 1.7614 -3.7453 -2.3689 31 1 4.7763 -1.3737 -3.9803 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846067184.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:51 Heat of formation + Delta-G solvation = -17.624099 kcal Electronic energy + Delta-G solvation = -19475.042133 eV Core-core repulsion = 16272.778934 eV Total energy + Delta-G solvation = -3202.263199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.35919 -36.90116 -36.25541 -35.72832 -35.23769 -32.24375 -31.47944 -31.45076 -27.34780 -26.37314 -24.41616 -22.37780 -19.63280 -19.26147 -18.13024 -17.51680 -17.09836 -16.63279 -15.91148 -15.52541 -14.92006 -14.67656 -14.32873 -14.17743 -13.56480 -13.42561 -13.07932 -12.63259 -12.30081 -11.98642 -11.91430 -11.84879 -11.78842 -11.62463 -11.31388 -11.06255 -10.65999 -10.49877 -10.38108 -9.57521 -9.44464 -9.32967 -8.99094 -8.47496 -8.11232 -6.49735 -3.96322 0.35674 2.72932 3.04249 3.17835 3.23412 3.43910 3.64523 3.76292 3.88557 4.01764 4.15498 4.38024 4.64072 4.72144 4.90619 5.04967 5.16675 5.35866 5.42426 5.57588 5.60195 5.92304 5.98316 6.18927 6.63160 6.88751 7.37405 7.42274 7.83642 8.24978 8.66160 8.96135 9.17715 9.69367 10.48380 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.032216 B = 0.006034 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.919135 B = 4639.533995 C = 5183.035051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.108 4.108 3 C 0.222 3.778 4 N -0.431 5.431 5 C -0.318 4.318 6 H 0.109 0.891 7 C 0.035 3.965 8 N -0.857 5.857 9 Si 0.921 3.079 10 H -0.277 1.277 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.442 3.558 14 O -0.569 6.569 15 C 0.099 3.901 16 H 0.094 0.906 17 C -0.123 4.123 18 C -0.593 4.593 19 S 2.577 3.423 20 O -0.962 6.962 21 O -0.966 6.966 22 N -1.078 6.078 23 H 0.199 0.801 24 H 0.065 0.935 25 H 0.115 0.885 26 H 0.271 0.729 27 H 0.122 0.878 28 H 0.098 0.902 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.289 -9.346 0.357 9.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.110 4.110 3 C 0.099 3.901 4 N -0.149 5.149 5 C -0.445 4.445 6 H 0.127 0.873 7 C -0.170 4.170 8 N -0.494 5.494 9 Si 0.747 3.253 10 H -0.203 1.203 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.229 3.771 14 O -0.452 6.452 15 C -0.013 4.013 16 H 0.112 0.888 17 C -0.163 4.163 18 C -0.724 4.724 19 S 2.671 3.329 20 O -0.951 6.951 21 O -0.955 6.955 22 N -0.845 5.845 23 H 0.217 0.783 24 H 0.083 0.917 25 H 0.133 0.867 26 H 0.081 0.919 27 H 0.141 0.859 28 H 0.117 0.883 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -1.935 -9.576 -0.685 9.794 hybrid contribution -0.161 1.390 0.968 1.701 sum -2.096 -8.187 0.283 8.456 Atomic orbital electron populations 1.24281 0.95350 1.05353 1.02708 1.22955 0.94127 0.95906 0.98031 1.18517 0.84660 0.93427 0.93493 1.43805 1.55141 1.08036 1.07964 1.19704 1.38255 0.82784 1.03768 0.87316 1.25254 0.95038 0.99810 0.96898 1.70094 1.22377 1.40630 1.16300 0.86038 0.80217 0.81430 0.77614 1.20251 1.19367 1.20762 1.19557 0.86380 0.87799 0.83398 1.90557 1.50972 1.64551 1.39112 1.21543 0.91508 0.98005 0.90224 0.88825 1.22802 0.94871 0.91965 1.06613 1.30817 1.19896 1.05151 1.16565 1.06071 0.77567 0.74056 0.75164 1.93612 1.84040 1.81637 1.35851 1.93604 1.64949 1.50908 1.86069 1.54787 1.36916 1.51428 1.41402 0.78343 0.91686 0.86748 0.91864 0.85943 0.88312 0.84048 0.83998 0.72226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.65 18.75 29.55 0.55 -4.09 16 2 C -0.11 -2.12 8.99 -37.12 -0.33 -2.45 16 3 C 0.22 4.34 4.86 -6.83 -0.03 4.30 16 4 N -0.43 -9.88 2.59 -117.93 -0.31 -10.19 16 5 C -0.32 -8.17 9.43 -14.93 -0.14 -8.31 16 6 H 0.11 2.99 7.30 -52.48 -0.38 2.60 16 7 C 0.03 0.84 4.93 -17.47 -0.09 0.76 16 8 N -0.86 -20.59 9.01 55.50 0.50 -20.09 16 9 Si 0.92 19.35 29.62 -169.99 -5.03 14.31 16 10 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 11 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 13 C 0.44 9.75 6.87 -10.99 -0.08 9.67 16 14 O -0.57 -14.67 15.97 5.54 0.09 -14.58 16 15 C 0.10 1.63 2.65 -68.22 -0.18 1.45 16 16 H 0.09 1.29 6.39 -51.93 -0.33 0.96 16 17 C -0.12 -1.73 5.74 -24.79 -0.14 -1.87 16 18 C -0.59 -6.18 7.51 38.54 0.29 -5.89 16 19 S 2.58 36.12 6.50 -107.50 -0.70 35.43 16 20 O -0.96 -16.89 18.13 -57.43 -1.04 -17.93 16 21 O -0.97 -15.54 18.13 -57.43 -1.04 -16.59 16 22 N -1.08 -17.05 6.31 -5.08 -0.03 -17.08 16 23 H 0.20 2.90 7.80 -54.09 -0.42 2.48 16 24 H 0.07 1.00 5.89 -51.93 -0.31 0.69 16 25 H 0.11 2.39 6.37 -51.93 -0.33 2.06 16 26 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 27 H 0.12 1.69 4.96 -51.93 -0.26 1.43 16 28 H 0.10 1.51 8.10 -51.93 -0.42 1.09 16 29 H 0.14 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.14 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.44 6.91 8.72 -40.34 -0.35 6.56 16 LS Contribution 277.44 15.07 4.18 4.18 Total: -1.00 -33.68 277.44 -6.32 -39.99 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -2.78 Total: 8.98 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -0.15 Total: -6.44 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.16 Total: -47.36 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -1.99 Total: -49.10 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.31 kcal Atomic # 16 Polarization: 36.12 SS G_CDS: -0.70 Total: 35.43 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.68 -6.32 -39.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846067184.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.368 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds