Wall clock time and date at job start Mon Mar 30 2020 01:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46981 * 125.37015 * 3 2 1 5 5 C 1.37102 * 120.00044 * 87.88132 * 4 3 2 6 6 H 1.08003 * 120.00192 * 172.53731 * 5 4 3 7 7 C 1.38952 * 119.99820 * 352.53941 * 5 4 3 8 8 N 1.31404 * 120.00094 * 335.39807 * 7 5 4 9 9 Si 1.86799 * 119.99879 * 155.40375 * 7 5 4 10 10 H 1.48501 * 109.47251 * 84.89261 * 9 7 5 11 11 H 1.48506 * 109.47127 * 324.88954 * 9 7 5 12 12 H 1.48499 * 109.47241 * 204.89108 * 9 7 5 13 13 C 1.34775 * 120.00255 * 267.87986 * 4 3 2 14 14 O 1.21295 * 120.00464 * 179.97438 * 13 4 3 15 15 C 1.50700 * 119.99923 * 0.02562 * 13 4 3 16 16 H 1.09003 * 109.34619 * 318.25693 * 15 13 4 17 17 C 1.54066 * 109.35916 * 77.89965 * 15 13 4 18 18 C 1.55601 * 104.29273 * 165.38373 * 17 15 13 19 19 S 1.83459 * 100.72621 * 322.08232 * 18 17 15 20 20 O 1.42097 * 111.24826 * 270.72994 * 19 18 17 21 21 O 1.42097 * 111.35633 * 131.51400 * 19 18 17 22 22 N 1.47059 * 109.35673 * 198.54694 * 15 13 4 23 23 H 4.40637 * 5.51438 * 179.97438 * 4 1 2 24 24 H 1.08991 * 109.47517 * 5.37147 * 3 2 1 25 25 H 1.09003 * 109.47166 * 245.36828 * 3 2 1 26 26 H 0.97002 * 120.00495 * 180.02562 * 8 7 5 27 27 H 1.08992 * 110.47089 * 284.08795 * 17 15 13 28 28 H 1.08999 * 110.46086 * 46.68169 * 17 15 13 29 29 H 1.09005 * 111.16468 * 204.22036 * 18 17 15 30 30 H 1.08991 * 111.20921 * 79.96719 * 18 17 15 31 31 H 0.97002 * 126.30269 * 30.81514 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8004 -1.1263 5 6 3.3204 2.1506 -0.9784 6 1 3.7922 2.7200 -1.7656 7 6 2.9025 2.7865 0.1842 8 7 1.9390 2.2639 0.9089 9 14 3.7104 4.3842 0.7170 10 1 3.0566 5.5242 0.0254 11 1 5.1524 4.3518 0.3634 12 1 3.5645 4.5469 2.1859 13 6 3.3995 0.2089 -2.3078 14 8 3.8031 0.8711 -3.2405 15 6 3.1940 -1.2751 -2.4706 16 1 3.5549 -1.7894 -1.5799 17 6 1.6921 -1.5657 -2.6530 18 6 1.6453 -3.0285 -3.1816 19 16 3.1086 -3.0387 -4.2880 20 8 2.7609 -2.6357 -5.6056 21 8 3.9319 -4.1714 -4.0467 22 7 3.9462 -1.7456 -3.6434 23 1 -1.0501 -0.0003 0.0001 24 1 3.0098 -1.0222 -0.0962 25 1 3.0091 0.4291 0.9342 26 1 1.6469 2.7079 1.7204 27 1 1.1703 -1.4883 -1.6993 28 1 1.2577 -0.8826 -3.3828 29 1 0.7282 -3.2159 -3.7403 30 1 1.7614 -3.7453 -2.3689 31 1 4.7763 -1.3737 -3.9803 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846067184.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:50 Heat of formation + Delta-G solvation = -45.069276 kcal Electronic energy + Delta-G solvation = -19476.232245 eV Core-core repulsion = 16272.778934 eV Total energy + Delta-G solvation = -3203.453311 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.94939 -38.10558 -37.65589 -37.02683 -36.83679 -33.94738 -33.06324 -32.60208 -28.86229 -27.83839 -26.02236 -23.60818 -21.10657 -20.48206 -19.74277 -18.85945 -18.42669 -18.15264 -17.30356 -16.78317 -16.45208 -16.22111 -15.81184 -15.60101 -14.94721 -14.72229 -14.27904 -14.12509 -13.81971 -13.51558 -13.25973 -13.23779 -13.06703 -12.93479 -12.74599 -12.51541 -12.41518 -12.11645 -11.57731 -11.17615 -11.02978 -10.71590 -10.52569 -10.09215 -9.90814 -8.33727 -5.87640 -0.71717 1.34149 1.44361 1.52005 1.59868 1.83409 2.15629 2.35921 2.45590 2.62853 2.87698 3.02173 3.26302 3.41504 3.55326 3.86050 3.88541 4.08212 4.29889 4.35871 4.65013 4.71398 4.80785 4.96155 5.07269 5.48436 5.51720 5.97543 6.12183 6.42898 7.13241 7.23518 7.40239 7.94471 8.61157 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.032216 B = 0.006034 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.919135 B = 4639.533995 C = 5183.035051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.144 4.144 3 C 0.221 3.779 4 N -0.441 5.441 5 C -0.357 4.357 6 H 0.074 0.926 7 C 0.013 3.987 8 N -0.858 5.858 9 Si 0.975 3.025 10 H -0.282 1.282 11 H -0.276 1.276 12 H -0.267 1.267 13 C 0.433 3.567 14 O -0.621 6.621 15 C 0.103 3.897 16 H 0.128 0.872 17 C -0.126 4.126 18 C -0.550 4.550 19 S 2.578 3.422 20 O -1.005 7.005 21 O -0.988 6.988 22 N -1.088 6.088 23 H 0.230 0.770 24 H 0.108 0.892 25 H 0.096 0.904 26 H 0.274 0.726 27 H 0.134 0.866 28 H 0.081 0.919 29 H 0.177 0.823 30 H 0.184 0.816 31 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.992 -10.951 1.983 11.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.146 4.146 3 C 0.099 3.901 4 N -0.159 5.159 5 C -0.484 4.484 6 H 0.092 0.908 7 C -0.192 4.192 8 N -0.494 5.494 9 Si 0.800 3.200 10 H -0.208 1.208 11 H -0.201 1.201 12 H -0.192 1.192 13 C 0.221 3.779 14 O -0.508 6.508 15 C -0.009 4.009 16 H 0.145 0.855 17 C -0.166 4.166 18 C -0.684 4.684 19 S 2.677 3.323 20 O -0.994 6.994 21 O -0.977 6.977 22 N -0.853 5.853 23 H 0.247 0.753 24 H 0.126 0.874 25 H 0.114 0.886 26 H 0.085 0.915 27 H 0.152 0.848 28 H 0.100 0.900 29 H 0.195 0.805 30 H 0.202 0.798 31 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -3.630 -11.207 0.954 11.819 hybrid contribution 0.296 1.909 0.500 1.995 sum -3.334 -9.298 1.453 9.984 Atomic orbital electron populations 1.25067 0.96199 1.03699 1.00975 1.23084 0.94524 0.97418 0.99584 1.18620 0.85251 0.94848 0.91420 1.43954 1.55177 1.07462 1.09261 1.19514 1.40231 0.84572 1.04089 0.90761 1.25769 0.95013 1.02092 0.96298 1.70169 1.21935 1.41194 1.16093 0.85246 0.78821 0.78227 0.77752 1.20796 1.20082 1.19159 1.20547 0.84738 0.90176 0.82441 1.90517 1.52915 1.66540 1.40784 1.21711 0.93564 0.93839 0.91807 0.85464 1.22813 0.92766 0.94046 1.06967 1.30691 1.18045 1.03427 1.16248 1.05977 0.78421 0.72913 0.75017 1.93560 1.84792 1.82017 1.39053 1.93573 1.66693 1.51135 1.86348 1.54930 1.36938 1.51887 1.41527 0.75313 0.87444 0.88618 0.91530 0.84759 0.90003 0.80520 0.79785 0.72846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -7.89 18.75 74.32 1.39 -6.50 16 2 C -0.14 -5.30 8.99 31.12 0.28 -5.02 16 3 C 0.22 8.30 4.86 84.57 0.41 8.71 16 4 N -0.44 -20.37 2.59 -645.41 -1.67 -22.04 16 5 C -0.36 -18.90 9.43 84.04 0.79 -18.10 16 6 H 0.07 4.35 7.30 -2.91 -0.02 4.33 16 7 C 0.01 0.64 4.93 84.93 0.42 1.06 16 8 N -0.86 -40.50 9.01 21.66 0.20 -40.31 16 9 Si 0.98 39.90 29.62 68.60 2.03 41.94 16 10 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 12 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 13 C 0.43 19.33 6.87 87.66 0.60 19.93 16 14 O -0.62 -33.52 15.97 -3.08 -0.05 -33.57 16 15 C 0.10 3.20 2.65 44.50 0.12 3.32 16 16 H 0.13 3.07 6.39 -2.39 -0.02 3.06 16 17 C -0.13 -3.17 5.74 31.85 0.18 -2.98 16 18 C -0.55 -8.81 7.51 72.88 0.55 -8.26 16 19 S 2.58 68.09 6.50 -56.49 -0.37 67.72 16 20 O -1.00 -35.02 18.13 -127.76 -2.32 -37.34 16 21 O -0.99 -30.17 18.13 -127.76 -2.32 -32.49 16 22 N -1.09 -33.92 6.31 -170.00 -1.07 -35.00 16 23 H 0.23 5.70 7.80 -4.41 -0.03 5.67 16 24 H 0.11 2.98 5.89 -2.39 -0.01 2.97 16 25 H 0.10 3.93 6.37 -2.39 -0.02 3.92 16 26 H 0.27 12.31 8.31 -92.71 -0.77 11.54 16 27 H 0.13 3.15 4.96 -2.39 -0.01 3.14 16 28 H 0.08 2.37 8.10 -2.39 -0.02 2.35 16 29 H 0.18 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.18 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.43 14.12 8.72 -93.01 -0.81 13.31 16 Total: -1.00 -76.17 277.44 -0.45 -76.62 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.37 Total: 22.30 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 4.75 Total: -7.85 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -2.55 Total: -97.34 kcal Atomic # 8 Polarization: -98.72 SS G_CDS: -4.68 Total: -103.40 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.94 kcal Atomic # 16 Polarization: 68.09 SS G_CDS: -0.37 Total: 67.72 kcal Total: -76.17 -0.45 -76.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846067184.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.555 kcal (2) G-P(sol) polarization free energy of solvation -76.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds