Wall clock time and date at job start Mon Mar 30 2020 01:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47550 * 2 1 4 4 C 1.35731 * 117.00503 * 179.97438 * 3 2 1 5 5 C 1.39291 * 120.84622 * 359.97438 * 4 3 2 6 6 C 1.37949 * 119.09450 * 180.02562 * 5 4 3 7 7 N 1.31981 * 120.82305 * 359.97438 * 6 5 4 8 8 C 1.31943 * 121.86306 * 0.02562 * 7 6 5 9 9 C 1.37992 * 120.82278 * 359.97438 * 8 7 6 10 10 S 1.76210 * 120.45294 * 180.27321 * 9 8 7 11 11 O 1.42096 * 106.40098 * 357.99806 * 10 9 8 12 12 O 1.42103 * 106.39859 * 130.91741 * 10 9 8 13 13 N 1.65597 * 107.21628 * 244.45248 * 10 9 8 14 14 C 1.36936 * 119.99776 * 64.35502 * 13 10 9 15 15 H 1.07999 * 120.00360 * 5.06134 * 14 13 10 16 16 C 1.38815 * 119.99964 * 185.05738 * 14 13 10 17 17 N 1.31616 * 120.00218 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99964 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46986 * 90.00456 * 18 16 14 20 20 H 1.48499 * 109.47283 * 210.00086 * 18 16 14 21 21 H 1.48498 * 109.47361 * 330.00475 * 18 16 14 22 22 H 1.09006 * 109.47107 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47365 * 300.00082 * 1 2 3 24 24 H 1.08998 * 109.47009 * 60.00432 * 1 2 3 25 25 H 1.09003 * 109.47437 * 239.99269 * 2 1 3 26 26 H 1.09005 * 109.47089 * 120.00231 * 2 1 3 27 27 H 1.08001 * 120.45366 * 359.97438 * 5 4 3 28 28 H 1.07998 * 119.59221 * 179.97438 * 6 5 4 29 29 H 1.08005 * 119.58772 * 180.02562 * 8 7 6 30 30 H 0.97000 * 120.00043 * 244.34515 * 13 10 9 31 31 H 0.96998 * 120.00317 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3520 1.5250 0.0005 5 6 4.2168 0.4331 0.0016 6 6 5.5782 0.6555 0.0027 7 7 6.0628 1.8832 0.0022 8 6 5.2762 2.9425 0.0012 9 6 3.9033 2.8037 0.0000 10 16 2.8620 4.2252 -0.0085 11 8 3.7238 5.3541 0.0345 12 8 1.9060 4.0159 -1.0389 13 7 2.0201 4.2247 1.4175 14 6 2.6863 4.3633 2.6058 15 1 3.7492 4.5547 2.6100 16 6 1.9954 4.2579 3.8052 17 7 0.7002 4.0242 3.8003 18 14 2.9043 4.4463 5.4263 19 1 2.8976 5.8741 5.8344 20 1 2.2314 3.6304 6.4688 21 1 4.3062 3.9843 5.2644 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.8267 -0.5741 0.0024 28 1 6.2560 -0.1853 0.0039 29 1 5.7123 3.9306 0.0004 30 1 1.0551 4.1263 1.4110 31 1 0.2174 3.9502 4.6384 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886397398.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:48 Heat of formation + Delta-G solvation = -102.367697 kcal Electronic energy + Delta-G solvation = -19474.605548 eV Core-core repulsion = 16268.667591 eV Total energy + Delta-G solvation = -3205.937957 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.67003 -39.48500 -37.92656 -36.66013 -36.45329 -33.51143 -32.81783 -32.43084 -31.56991 -26.43449 -25.61605 -24.77191 -23.19930 -20.44854 -20.04314 -19.68617 -18.54296 -18.06580 -17.75496 -17.23873 -16.49404 -16.21697 -15.97691 -15.47244 -15.30573 -15.02726 -14.97884 -13.81712 -13.72151 -13.52508 -13.38665 -13.11289 -12.97584 -12.96576 -12.82454 -12.60972 -12.36212 -12.08250 -11.93240 -11.81989 -11.76671 -10.68710 -10.62521 -10.15471 -10.05451 -8.32736 -5.87699 -0.38777 -0.14755 0.18576 1.46429 1.49592 1.57606 1.93604 2.27602 2.50256 2.69507 2.93126 3.22353 3.41202 3.50110 3.63312 4.00688 4.03960 4.07235 4.18099 4.30185 4.46430 4.57424 4.76059 4.86215 4.90658 5.11226 5.22642 5.43014 5.61311 6.07630 6.75755 6.78489 6.95070 7.34062 8.84932 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.008767 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.823908 B = 3192.849670 C = 3514.601527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.040 3.960 3 O -0.322 6.322 4 C 0.249 3.751 5 C -0.277 4.277 6 C 0.172 3.828 7 N -0.536 5.536 8 C 0.214 3.786 9 C -0.770 4.770 10 S 2.669 3.331 11 O -0.995 6.995 12 O -1.008 7.008 13 N -0.962 5.962 14 C -0.307 4.307 15 H 0.102 0.898 16 C -0.012 4.012 17 N -0.918 5.918 18 Si 0.978 3.022 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.262 1.262 22 H 0.115 0.885 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.183 0.817 28 H 0.209 0.791 29 H 0.177 0.823 30 H 0.406 0.594 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.076 -12.355 -4.473 13.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.034 4.034 3 O -0.232 6.232 4 C 0.193 3.807 5 C -0.298 4.298 6 C 0.018 3.982 7 N -0.250 5.250 8 C 0.056 3.944 9 C -0.858 4.858 10 S 2.759 3.241 11 O -0.985 6.985 12 O -0.998 6.998 13 N -0.715 5.715 14 C -0.443 4.443 15 H 0.120 0.880 16 C -0.214 4.214 17 N -0.560 5.560 18 Si 0.802 3.198 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.186 1.186 22 H 0.134 0.866 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.111 0.889 26 H 0.101 0.899 27 H 0.200 0.800 28 H 0.225 0.775 29 H 0.194 0.806 30 H 0.241 0.759 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.783 -11.556 -5.126 13.516 hybrid contribution -0.959 -0.588 1.054 1.542 sum 3.823 -12.144 -4.073 13.367 Atomic orbital electron populations 1.21854 0.91732 1.04569 1.02901 1.23359 0.97152 0.79317 1.03537 1.86199 1.17828 1.33555 1.85668 1.18841 0.83762 0.93093 0.85042 1.22617 0.95495 0.99836 1.11839 1.23575 0.93395 0.95124 0.86148 1.67900 1.39761 0.99765 1.17535 1.22593 0.87032 0.99453 0.85358 1.31579 1.11346 1.17720 1.25202 1.03385 0.72616 0.75146 0.72906 1.93438 1.68338 1.49227 1.87541 1.93420 1.61486 1.87206 1.57641 1.51226 1.16402 1.83945 1.19897 1.19443 0.94811 1.46322 0.83677 0.87991 1.25965 0.96450 0.96943 1.02074 1.69797 1.08127 1.49339 1.28754 0.85143 0.78528 0.78512 0.77581 1.19851 1.20307 1.18647 0.86635 0.93037 0.92075 0.88867 0.89905 0.80009 0.77469 0.80565 0.75885 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 10.28 71.98 0.74 -2.77 16 2 C 0.04 0.97 5.49 71.98 0.39 1.36 16 3 O -0.32 -11.77 9.12 -85.08 -0.78 -12.55 16 4 C 0.25 9.00 6.68 22.77 0.15 9.16 16 5 C -0.28 -7.29 9.11 22.45 0.20 -7.08 16 6 C 0.17 4.32 11.17 84.60 0.95 5.26 16 7 N -0.54 -17.36 10.36 -196.08 -2.03 -19.39 16 8 C 0.21 7.95 10.71 84.62 0.91 8.85 16 9 C -0.77 -31.42 5.84 22.45 0.13 -31.29 16 10 S 2.67 125.44 5.33 -56.49 -0.30 125.14 16 11 O -0.99 -49.53 16.70 -128.00 -2.14 -51.67 16 12 O -1.01 -50.31 17.42 -124.00 -2.16 -52.47 16 13 N -0.96 -49.12 5.74 -54.26 -0.31 -49.43 16 14 C -0.31 -16.16 9.64 84.03 0.81 -15.35 16 15 H 0.10 5.20 7.80 -2.91 -0.02 5.17 16 16 C -0.01 -0.60 5.50 84.86 0.47 -0.14 16 17 N -0.92 -49.96 13.06 21.65 0.28 -49.68 16 18 Si 0.98 41.15 29.55 68.60 2.03 43.18 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 20 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 21 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 22 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 23 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.09 1.68 7.71 -2.39 -0.02 1.66 16 26 H 0.08 1.71 7.71 -2.38 -0.02 1.69 16 27 H 0.18 3.11 6.47 -2.91 -0.02 3.09 16 28 H 0.21 3.01 8.06 -2.91 -0.02 2.99 16 29 H 0.18 6.25 7.35 -2.91 -0.02 6.23 16 30 H 0.41 21.43 8.04 -96.75 -0.78 20.65 16 31 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -70.48 288.89 -0.27 -70.75 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 0.39 Total: 28.12 kcal Atomic # 6 Polarization: -36.74 SS G_CDS: 4.75 Total: -31.99 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -2.06 Total: -118.50 kcal Atomic # 8 Polarization: -111.61 SS G_CDS: -5.07 Total: -116.69 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: 125.44 SS G_CDS: -0.30 Total: 125.14 kcal Total: -70.48 -0.27 -70.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886397398.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.622 kcal (2) G-P(sol) polarization free energy of solvation -70.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds