Wall clock time and date at job start Mon Mar 30 2020 01:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30853 * 125.78013 * 2 1 4 4 N 1.40075 * 108.41578 * 180.02562 * 3 2 1 5 5 C 1.46498 * 126.09165 * 180.02562 * 4 3 2 6 6 C 1.35855 * 107.81526 * 0.02562 * 4 3 2 7 7 N 1.39574 * 126.26356 * 179.97438 * 6 4 3 8 8 C 1.34783 * 120.00247 * 307.90676 * 7 6 4 9 9 O 1.21591 * 119.99635 * 6.11222 * 8 7 6 10 10 N 1.34772 * 119.99962 * 186.11629 * 8 7 6 11 11 C 1.46498 * 120.00116 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47513 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99906 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00208 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99907 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00158 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47470 * 59.99913 * 16 14 12 18 18 H 1.48506 * 109.47434 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47339 * 299.99674 * 16 14 12 20 20 C 1.36144 * 107.47171 * 0.02562 * 6 4 3 21 21 Cl 1.73605 * 126.06918 * 179.73791 * 20 6 4 22 22 H 1.08996 * 109.46659 * 269.96844 * 1 2 3 23 23 H 1.08994 * 109.47258 * 29.97317 * 1 2 3 24 24 H 1.09000 * 109.47070 * 149.97285 * 1 2 3 25 25 H 1.09007 * 109.47040 * 275.92450 * 5 4 3 26 26 H 1.08999 * 109.47334 * 35.92537 * 5 4 3 27 27 H 1.08997 * 109.47004 * 155.93192 * 5 4 3 28 28 H 0.97005 * 120.00044 * 127.90344 * 7 6 4 29 29 H 0.97004 * 120.00426 * 359.97438 * 10 8 7 30 30 H 1.09001 * 109.47215 * 299.99868 * 11 10 8 31 31 H 1.09000 * 109.47254 * 59.99340 * 11 10 8 32 32 H 0.96999 * 120.00118 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2721 1.0616 0.0000 4 7 3.6090 0.6435 -0.0006 5 6 4.7860 1.5158 -0.0003 6 6 3.6197 -0.7150 -0.0015 7 7 4.7515 -1.5317 -0.0029 8 6 5.7171 -1.3439 -0.9243 9 8 5.6570 -0.3958 -1.6832 10 7 6.7490 -2.2070 -1.0046 11 6 7.7982 -2.0032 -2.0065 12 6 8.8271 -3.0978 -1.8864 13 1 8.7113 -3.8680 -1.1382 14 6 9.9162 -3.1160 -2.7316 15 7 10.0570 -2.1784 -3.6430 16 14 11.1918 -4.4723 -2.5822 17 1 10.5428 -5.7891 -2.8052 18 1 12.2547 -4.2665 -3.5988 19 1 11.7922 -4.4399 -1.2243 20 6 2.3243 -1.1339 -0.0021 21 17 1.7836 -2.7836 -0.0098 22 1 -0.3632 -0.0006 1.0277 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3633 -0.8897 -0.5143 25 1 5.0145 1.8181 -1.0223 26 1 4.5825 2.4003 0.6033 27 1 5.6366 0.9780 0.4183 28 1 4.8433 -2.2345 0.6595 29 1 6.7971 -2.9632 -0.3990 30 1 7.3579 -2.0258 -3.0034 31 1 8.2751 -1.0370 -1.8419 32 1 10.8230 -2.1913 -4.2379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888640327.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:34 Heat of formation + Delta-G solvation = 15.545398 kcal Electronic energy + Delta-G solvation = -18414.049974 eV Core-core repulsion = 15243.474157 eV Total energy + Delta-G solvation = -3170.575816 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.71435 -40.87051 -37.46025 -36.52809 -35.96918 -34.74430 -34.20714 -30.90457 -30.14874 -28.92413 -26.42298 -25.05422 -22.87264 -22.00588 -21.00916 -19.97705 -18.83995 -18.10561 -17.17169 -16.94129 -16.60603 -16.44642 -15.85766 -15.45850 -14.98715 -14.53811 -14.35725 -14.09904 -14.04518 -13.64709 -13.33857 -13.22061 -12.93573 -12.69564 -12.58890 -12.43327 -12.24616 -11.88067 -11.56561 -11.51005 -11.20336 -10.80860 -10.18709 -9.82868 -9.32686 -8.29027 -6.45141 0.41083 0.82249 1.30849 1.38601 1.45938 1.48271 1.56608 1.74266 2.08379 2.38720 3.06804 3.21920 3.44168 3.86729 4.10048 4.27774 4.29632 4.61344 4.72394 4.83663 4.88257 4.99004 5.03231 5.24425 5.40409 5.44751 5.50813 5.78871 5.81632 5.95070 6.45703 6.64597 7.00919 7.23638 7.44061 8.82626 Molecular weight = 272.08amu Principal moments of inertia in cm(-1) A = 0.032200 B = 0.004112 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.368483 B = 6808.147681 C = 7435.575768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.098 3.902 3 N -0.297 5.297 4 N -0.365 5.365 5 C 0.118 3.882 6 C 0.338 3.662 7 N -0.655 5.655 8 C 0.698 3.302 9 O -0.619 6.619 10 N -0.707 5.707 11 C 0.286 3.714 12 C -0.556 4.556 13 H 0.085 0.915 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.982 3.018 17 H -0.264 1.264 18 H -0.287 1.287 19 H -0.262 1.262 20 C -0.208 4.208 21 Cl -0.023 7.023 22 H 0.102 0.898 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.067 0.933 26 H 0.110 0.890 27 H 0.079 0.921 28 H 0.433 0.567 29 H 0.409 0.591 30 H -0.011 1.011 31 H -0.005 1.005 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.717 0.171 11.878 19.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.069 4.069 3 N -0.122 5.122 4 N -0.149 5.149 5 C -0.023 4.023 6 C 0.114 3.886 7 N -0.313 5.313 8 C 0.398 3.602 9 O -0.498 6.498 10 N -0.360 5.360 11 C 0.164 3.836 12 C -0.594 4.594 13 H 0.103 0.897 14 C -0.192 4.192 15 N -0.567 5.567 16 Si 0.806 3.194 17 H -0.188 1.188 18 H -0.213 1.213 19 H -0.186 1.186 20 C -0.249 4.249 21 Cl 0.005 6.995 22 H 0.120 0.880 23 H 0.105 0.895 24 H 0.110 0.890 25 H 0.086 0.914 26 H 0.129 0.871 27 H 0.098 0.902 28 H 0.274 0.726 29 H 0.245 0.755 30 H 0.007 0.993 31 H 0.013 0.987 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.422 2.268 11.010 19.084 hybrid contribution 1.156 -1.933 0.104 2.255 sum -14.266 0.335 11.113 18.087 Atomic orbital electron populations 1.20406 0.82948 1.04712 1.04947 1.22643 0.98941 0.87655 0.97621 1.77438 0.85298 1.22136 1.27323 1.48751 1.06533 1.03448 1.56203 1.21894 0.82554 0.94069 1.03758 1.17304 0.87035 0.82909 1.01303 1.41765 1.18029 1.36616 1.34882 1.16161 0.80055 0.83149 0.80840 1.90914 1.79015 1.33436 1.46444 1.45298 1.23058 1.28659 1.39004 1.18509 0.83759 0.96096 0.85277 1.21555 1.07158 1.11333 1.19372 0.89689 1.25986 1.00349 0.98754 0.94155 1.70118 1.30909 1.35264 1.20450 0.85240 0.77424 0.78462 0.78305 1.18831 1.21276 1.18619 1.20182 0.90618 0.88573 1.25531 1.98305 1.89286 1.14090 1.97835 0.87997 0.89527 0.89027 0.91417 0.87116 0.90199 0.72569 0.75485 0.99299 0.98665 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 10.30 71.24 0.73 -0.44 16 2 C 0.10 2.52 7.20 43.08 0.31 2.83 16 3 N -0.30 -8.93 12.56 -47.43 -0.60 -9.53 16 4 N -0.37 -11.53 3.96 -365.84 -1.45 -12.98 16 5 C 0.12 3.38 9.63 127.77 1.23 4.61 16 6 C 0.34 10.43 6.88 131.10 0.90 11.33 16 7 N -0.66 -19.23 5.31 -321.77 -1.71 -20.94 16 8 C 0.70 26.97 7.79 179.05 1.39 28.36 16 9 O -0.62 -29.09 13.68 -4.00 -0.05 -29.14 16 10 N -0.71 -28.02 5.55 -482.29 -2.68 -30.70 16 11 C 0.29 14.90 5.43 85.63 0.46 15.36 16 12 C -0.56 -28.88 9.28 25.60 0.24 -28.65 16 13 H 0.09 3.95 7.60 -2.91 -0.02 3.93 16 14 C 0.01 0.41 5.46 84.65 0.46 0.87 16 15 N -0.93 -54.39 13.29 21.45 0.28 -54.10 16 16 Si 0.98 41.00 29.54 68.60 2.03 43.02 16 17 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 18 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 20 C -0.21 -5.70 6.66 22.15 0.15 -5.56 16 21 Cl -0.02 -0.53 28.98 -2.72 -0.08 -0.61 16 22 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 24 H 0.09 1.31 7.99 -2.39 -0.02 1.29 16 25 H 0.07 2.24 7.53 -2.38 -0.02 2.22 16 26 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.08 2.32 7.28 -2.39 -0.02 2.30 16 28 H 0.43 9.47 8.84 -92.70 -0.82 8.65 16 29 H 0.41 13.11 8.34 -92.71 -0.77 12.34 16 30 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 31 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -69.42 299.43 1.21 -68.21 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -0.42 Total: 18.03 kcal Atomic # 6 Polarization: 22.85 SS G_CDS: 5.88 Total: 28.74 kcal Atomic # 7 Polarization: -122.10 SS G_CDS: -6.15 Total: -128.25 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.05 Total: -29.14 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.02 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.61 kcal Total: -69.42 1.21 -68.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888640327.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.759 kcal (2) G-P(sol) polarization free energy of solvation -69.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds