Wall clock time and date at job start Mon Mar 30 2020 01:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35672 * 116.99991 * 2 1 4 4 N 1.32270 * 119.68605 * 0.02562 * 3 2 1 5 5 C 1.31933 * 121.65003 * 179.97438 * 4 3 2 6 6 C 1.38090 * 120.83206 * 359.97438 * 5 4 3 7 7 C 1.38786 * 119.28756 * 0.02562 * 6 5 4 8 8 C 1.38415 * 118.48347 * 0.27260 * 7 6 5 9 9 S 1.76210 * 120.44178 * 179.72624 * 8 7 6 10 10 O 1.42105 * 106.39936 * 228.54375 * 9 8 7 11 11 O 1.42102 * 106.39999 * 1.46303 * 9 8 7 12 12 N 1.65598 * 107.21832 * 115.00399 * 9 8 7 13 13 C 1.46501 * 120.00105 * 270.00263 * 12 9 8 14 14 C 1.36943 * 120.00140 * 89.99600 * 12 9 8 15 15 H 1.08003 * 119.99527 * 22.40714 * 14 12 9 16 16 C 1.38807 * 119.99976 * 202.40744 * 14 12 9 17 17 N 1.31615 * 120.00379 * 11.10526 * 16 14 12 18 18 Si 1.86805 * 119.99776 * 191.11206 * 16 14 12 19 19 H 1.48503 * 109.46859 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47224 * 119.99684 * 18 16 14 21 21 H 1.48504 * 109.46806 * 240.00142 * 18 16 14 22 22 H 1.08995 * 109.47440 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46730 * 299.99337 * 1 2 3 24 24 H 1.08998 * 109.47302 * 59.99035 * 1 2 3 25 25 H 1.08000 * 119.58813 * 179.97438 * 5 4 3 26 26 H 1.08007 * 120.35916 * 180.02562 * 6 5 4 27 27 H 1.07999 * 120.75576 * 180.02562 * 7 6 5 28 28 H 1.09002 * 109.47041 * 94.21263 * 13 12 9 29 29 H 1.09000 * 109.46839 * 214.21773 * 13 12 9 30 30 H 1.09004 * 109.46764 * 334.21592 * 13 12 9 31 31 H 0.97004 * 120.00187 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3185 2.3142 0.0005 5 6 1.8768 3.5096 0.0010 6 6 3.2507 3.6490 0.0016 7 6 4.0484 2.5133 0.0011 8 6 3.4323 1.2739 -0.0058 9 16 4.3952 -0.2018 -0.0141 10 8 3.8586 -1.0253 -1.0403 11 8 5.7557 0.2067 0.0229 12 7 4.1032 -0.9857 1.4151 13 6 4.9370 -0.7070 2.5871 14 6 3.0823 -1.8943 1.5016 15 1 2.7071 -2.3715 0.6083 16 6 2.5299 -2.2019 2.7373 17 7 2.8275 -1.4721 3.7914 18 14 1.3640 -3.6519 2.9042 19 1 1.1936 -4.3048 1.5813 20 1 1.9253 -4.6297 3.8707 21 1 0.0458 -3.1734 3.3930 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5140 -0.8899 25 1 1.2516 4.3902 0.0010 26 1 3.6997 4.6313 0.0024 27 1 5.1253 2.5948 0.0019 28 1 4.4612 0.0608 3.1972 29 1 5.0537 -1.6176 3.1747 30 1 5.9165 -0.3568 2.2611 31 1 2.4411 -1.6869 4.6548 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903616098.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:59 Heat of formation + Delta-G solvation = -55.633588 kcal Electronic energy + Delta-G solvation = -20026.977304 eV Core-core repulsion = 16823.065891 eV Total energy + Delta-G solvation = -3203.911414 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.04226 -37.40147 -35.69016 -35.61594 -34.35030 -32.09888 -31.43810 -30.29902 -26.81832 -26.40907 -23.60104 -23.30021 -22.49905 -18.50452 -18.05697 -17.30165 -16.84782 -16.28686 -16.02796 -15.43157 -14.63444 -14.55952 -14.24125 -13.70443 -13.28952 -13.15926 -12.97846 -12.73644 -12.23593 -11.80648 -11.37768 -11.34680 -11.03165 -11.00803 -10.76347 -10.67634 -10.56535 -10.29863 -10.17470 -10.05674 -9.65495 -9.28790 -9.11788 -8.22101 -8.04565 -6.52178 -3.95649 1.24446 1.70381 1.83643 3.09745 3.16177 3.23200 3.59629 3.95920 4.07289 4.48496 4.71627 4.82452 5.05024 5.15449 5.34369 5.63669 5.70337 5.74726 5.80250 5.96541 6.03923 6.33429 6.39971 6.49037 6.79793 6.88933 7.12980 7.31127 7.46482 7.68588 8.15518 8.34398 8.69487 9.17043 10.44352 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.019549 B = 0.009911 C = 0.008105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.975419 B = 2824.396679 C = 3453.771504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.270 6.270 3 C 0.408 3.592 4 N -0.561 5.561 5 C 0.163 3.837 6 C -0.244 4.244 7 C 0.036 3.964 8 C -0.729 4.729 9 S 2.539 3.461 10 O -0.975 6.975 11 O -1.007 7.007 12 N -0.802 5.802 13 C 0.123 3.877 14 C -0.219 4.219 15 H 0.118 0.882 16 C 0.028 3.972 17 N -0.839 5.839 18 Si 0.923 3.077 19 H -0.260 1.260 20 H -0.277 1.277 21 H -0.278 1.278 22 H 0.097 0.903 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.154 0.846 26 H 0.134 0.866 27 H 0.148 0.852 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.950 5.441 -1.490 6.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.174 6.174 3 C 0.228 3.772 4 N -0.286 5.286 5 C 0.006 3.994 6 C -0.266 4.266 7 C 0.010 3.990 8 C -0.807 4.807 9 S 2.634 3.366 10 O -0.964 6.964 11 O -0.996 6.996 12 N -0.627 5.627 13 C -0.023 4.023 14 C -0.368 4.368 15 H 0.136 0.864 16 C -0.183 4.183 17 N -0.481 5.481 18 Si 0.748 3.252 19 H -0.184 1.184 20 H -0.203 1.203 21 H -0.204 1.204 22 H 0.115 0.885 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.171 0.829 26 H 0.152 0.848 27 H 0.165 0.835 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.131 5.065 -2.162 6.335 hybrid contribution -0.628 0.503 0.560 0.980 sum -3.759 5.568 -1.602 6.906 Atomic orbital electron populations 1.22828 0.77899 1.03040 1.01556 1.86551 1.22300 1.22922 1.85602 1.19157 0.88042 0.84831 0.85202 1.67346 1.40972 0.98987 1.21295 1.22432 0.92882 0.93701 0.90348 1.21943 0.95265 0.99612 1.09734 1.21184 1.00612 0.90208 0.87035 1.32269 1.06018 1.23866 1.18580 1.11472 0.74681 0.72869 0.77558 1.93366 1.79871 1.65477 1.57708 1.93308 1.35154 1.83244 1.87921 1.54152 1.39126 1.40519 1.28856 1.21312 0.90950 1.02453 0.87621 1.20089 1.12033 1.09015 0.95624 0.86407 1.25736 0.97226 0.99386 0.95950 1.70117 1.40694 1.36768 1.00484 0.85890 0.79496 0.80500 0.79273 1.18406 1.20260 1.20428 0.88496 0.92509 0.92908 0.82859 0.84834 0.83483 0.93119 0.90651 0.93790 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.38 101.05 1.05 1.78 16 2 O -0.27 -5.99 7.84 -27.44 -0.22 -6.21 16 3 C 0.41 8.99 7.45 -17.13 -0.13 8.86 16 4 N -0.56 -10.90 9.22 -13.33 -0.12 -11.02 16 5 C 0.16 2.61 11.18 -17.56 -0.20 2.41 16 6 C -0.24 -3.83 10.11 -39.43 -0.40 -4.23 16 7 C 0.04 0.68 9.66 -39.31 -0.38 0.30 16 8 C -0.73 -16.22 5.94 -39.28 -0.23 -16.46 16 9 S 2.54 62.01 5.26 -107.50 -0.57 61.44 16 10 O -0.97 -26.02 16.14 -62.21 -1.00 -27.02 16 11 O -1.01 -25.08 15.61 -57.17 -0.89 -25.97 16 12 N -0.80 -19.77 3.31 -66.68 -0.22 -19.99 16 13 C 0.12 2.80 8.92 59.85 0.53 3.34 16 14 C -0.22 -5.49 8.00 -15.06 -0.12 -5.61 16 15 H 0.12 2.99 7.16 -52.48 -0.38 2.62 16 16 C 0.03 0.68 5.13 -17.43 -0.09 0.59 16 17 N -0.84 -20.46 10.58 55.49 0.59 -19.87 16 18 Si 0.92 18.60 29.57 -169.99 -5.03 13.57 16 19 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 20 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 22 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 23 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 24 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 25 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 26 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 27 H 0.15 2.54 7.43 -52.49 -0.39 2.15 16 28 H 0.05 1.17 7.42 -51.93 -0.39 0.79 16 29 H 0.07 1.72 7.18 -51.93 -0.37 1.34 16 30 H 0.04 0.93 6.93 -51.93 -0.36 0.57 16 31 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 LS Contribution 280.49 15.07 4.23 4.23 Total: -1.00 -30.78 280.49 -6.32 -37.11 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -3.13 Total: 2.75 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 0.04 Total: -9.01 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.24 Total: -50.88 kcal Atomic # 8 Polarization: -57.09 SS G_CDS: -2.11 Total: -59.20 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Atomic # 16 Polarization: 62.01 SS G_CDS: -0.57 Total: 61.44 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.78 -6.32 -37.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903616098.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.528 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds