Wall clock time and date at job start Mon Mar 30 2020 01:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35672 * 116.99991 * 2 1 4 4 N 1.32270 * 119.68605 * 0.02562 * 3 2 1 5 5 C 1.31933 * 121.65003 * 179.97438 * 4 3 2 6 6 C 1.38090 * 120.83206 * 359.97438 * 5 4 3 7 7 C 1.38786 * 119.28756 * 0.02562 * 6 5 4 8 8 C 1.38415 * 118.48347 * 0.27260 * 7 6 5 9 9 S 1.76210 * 120.44178 * 179.72624 * 8 7 6 10 10 O 1.42105 * 106.39936 * 228.54375 * 9 8 7 11 11 O 1.42102 * 106.39999 * 1.46303 * 9 8 7 12 12 N 1.65598 * 107.21832 * 115.00399 * 9 8 7 13 13 C 1.46501 * 120.00105 * 270.00263 * 12 9 8 14 14 C 1.36943 * 120.00140 * 89.99600 * 12 9 8 15 15 H 1.08003 * 119.99527 * 22.40714 * 14 12 9 16 16 C 1.38807 * 119.99976 * 202.40744 * 14 12 9 17 17 N 1.31615 * 120.00379 * 11.10526 * 16 14 12 18 18 Si 1.86805 * 119.99776 * 191.11206 * 16 14 12 19 19 H 1.48503 * 109.46859 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47224 * 119.99684 * 18 16 14 21 21 H 1.48504 * 109.46806 * 240.00142 * 18 16 14 22 22 H 1.08995 * 109.47440 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46730 * 299.99337 * 1 2 3 24 24 H 1.08998 * 109.47302 * 59.99035 * 1 2 3 25 25 H 1.08000 * 119.58813 * 179.97438 * 5 4 3 26 26 H 1.08007 * 120.35916 * 180.02562 * 6 5 4 27 27 H 1.07999 * 120.75576 * 180.02562 * 7 6 5 28 28 H 1.09002 * 109.47041 * 94.21263 * 13 12 9 29 29 H 1.09000 * 109.46839 * 214.21773 * 13 12 9 30 30 H 1.09004 * 109.46764 * 334.21592 * 13 12 9 31 31 H 0.97004 * 120.00187 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3185 2.3142 0.0005 5 6 1.8768 3.5096 0.0010 6 6 3.2507 3.6490 0.0016 7 6 4.0484 2.5133 0.0011 8 6 3.4323 1.2739 -0.0058 9 16 4.3952 -0.2018 -0.0141 10 8 3.8586 -1.0253 -1.0403 11 8 5.7557 0.2067 0.0229 12 7 4.1032 -0.9857 1.4151 13 6 4.9370 -0.7070 2.5871 14 6 3.0823 -1.8943 1.5016 15 1 2.7071 -2.3715 0.6083 16 6 2.5299 -2.2019 2.7373 17 7 2.8275 -1.4721 3.7914 18 14 1.3640 -3.6519 2.9042 19 1 1.1936 -4.3048 1.5813 20 1 1.9253 -4.6297 3.8707 21 1 0.0458 -3.1734 3.3930 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5140 -0.8899 25 1 1.2516 4.3902 0.0010 26 1 3.6997 4.6313 0.0024 27 1 5.1253 2.5948 0.0019 28 1 4.4612 0.0608 3.1972 29 1 5.0537 -1.6176 3.1747 30 1 5.9165 -0.3568 2.2611 31 1 2.4411 -1.6869 4.6548 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903616098.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:58 Heat of formation + Delta-G solvation = -79.395310 kcal Electronic energy + Delta-G solvation = -20028.007690 eV Core-core repulsion = 16823.065891 eV Total energy + Delta-G solvation = -3204.941799 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.50635 -38.89827 -37.68389 -37.44140 -36.38067 -33.57076 -33.26325 -31.71827 -28.27809 -28.17104 -25.37180 -24.85122 -23.96140 -20.34424 -19.61211 -19.03757 -18.60670 -17.84739 -17.83330 -16.95196 -16.36067 -16.13268 -15.89835 -15.16275 -15.04212 -14.73446 -14.45564 -14.41322 -13.66364 -13.63597 -13.15340 -12.97458 -12.74103 -12.70260 -12.67008 -12.31269 -12.16016 -12.08295 -11.99807 -11.81642 -11.17753 -11.07249 -10.64938 -9.90942 -9.63657 -8.29936 -5.84462 -0.25498 0.00999 0.27327 1.49150 1.52340 1.64971 2.15116 2.29471 2.55289 2.74612 3.00082 3.22621 3.36869 3.72421 3.92047 4.26627 4.35518 4.41033 4.43239 4.46263 4.61236 4.71099 4.90428 5.04299 5.06069 5.26795 5.46333 5.47688 5.64262 6.22412 6.49802 6.72838 6.87020 7.33331 8.68247 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.019549 B = 0.009911 C = 0.008105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.975419 B = 2824.396679 C = 3453.771504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.301 6.301 3 C 0.387 3.613 4 N -0.569 5.569 5 C 0.169 3.831 6 C -0.227 4.227 7 C 0.024 3.976 8 C -0.766 4.766 9 S 2.568 3.432 10 O -1.005 7.005 11 O -1.018 7.018 12 N -0.821 5.821 13 C 0.133 3.867 14 C -0.250 4.250 15 H 0.103 0.897 16 C -0.001 4.001 17 N -0.867 5.867 18 Si 0.979 3.021 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.272 1.272 22 H 0.114 0.886 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.207 0.793 26 H 0.185 0.815 27 H 0.158 0.842 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.828 7.509 -1.585 8.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.205 6.205 3 C 0.208 3.792 4 N -0.295 5.295 5 C 0.012 3.988 6 C -0.247 4.247 7 C -0.002 4.002 8 C -0.850 4.850 9 S 2.667 3.333 10 O -0.995 6.995 11 O -1.007 7.007 12 N -0.646 5.646 13 C -0.013 4.013 14 C -0.396 4.396 15 H 0.121 0.879 16 C -0.209 4.209 17 N -0.508 5.508 18 Si 0.802 3.198 19 H -0.184 1.184 20 H -0.197 1.197 21 H -0.197 1.197 22 H 0.132 0.868 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.224 0.776 26 H 0.202 0.798 27 H 0.176 0.824 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.001 7.073 -2.229 8.426 hybrid contribution -0.342 0.149 0.463 0.594 sum -4.342 7.222 -1.766 8.610 Atomic orbital electron populations 1.23071 0.76002 1.04483 1.02261 1.86504 1.24472 1.23807 1.85758 1.19337 0.88195 0.85625 0.86084 1.67460 1.40914 0.99431 1.21646 1.23453 0.94063 0.93984 0.87272 1.22472 0.94933 1.00593 1.06703 1.21531 1.01678 0.90207 0.86815 1.31810 1.06318 1.23871 1.23016 1.09527 0.74108 0.73102 0.76610 1.93326 1.80419 1.67100 1.58640 1.93289 1.35740 1.83673 1.88028 1.53907 1.39919 1.42114 1.28689 1.21207 0.91037 1.01885 0.87159 1.19968 1.13026 1.10827 0.95733 0.87916 1.26331 0.98124 1.01241 0.95229 1.70177 1.41822 1.38009 1.00811 0.85068 0.77864 0.77783 0.79116 1.18397 1.19713 1.19690 0.86823 0.92366 0.91497 0.77640 0.79794 0.82443 0.93950 0.91211 0.92750 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.24 10.38 113.37 1.18 2.42 16 2 O -0.30 -13.50 7.84 -81.56 -0.64 -14.14 16 3 C 0.39 16.87 7.45 84.78 0.63 17.50 16 4 N -0.57 -20.78 9.22 -308.95 -2.85 -23.62 16 5 C 0.17 4.64 11.18 84.64 0.95 5.59 16 6 C -0.23 -6.08 10.11 22.37 0.23 -5.85 16 7 C 0.02 0.86 9.66 22.44 0.22 1.07 16 8 C -0.77 -33.83 5.94 22.47 0.13 -33.70 16 9 S 2.57 127.67 5.26 -56.49 -0.30 127.37 16 10 O -1.00 -55.23 16.14 -123.18 -1.99 -57.22 16 11 O -1.02 -50.96 15.61 -128.00 -2.00 -52.95 16 12 N -0.82 -41.55 3.31 -364.89 -1.21 -42.76 16 13 C 0.13 6.22 8.92 127.77 1.14 7.36 16 14 C -0.25 -12.89 8.00 84.03 0.67 -12.22 16 15 H 0.10 5.47 7.16 -2.91 -0.02 5.45 16 16 C 0.00 -0.04 5.13 84.86 0.44 0.39 16 17 N -0.87 -42.93 10.58 21.65 0.23 -42.70 16 18 Si 0.98 38.40 29.57 68.60 2.03 40.43 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 20 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 21 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 22 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 23 H 0.06 1.92 8.10 -2.39 -0.02 1.90 16 24 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16 25 H 0.21 3.43 8.06 -2.91 -0.02 3.41 16 26 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 27 H 0.16 5.13 7.43 -2.91 -0.02 5.11 16 28 H 0.04 2.01 7.42 -2.39 -0.02 1.99 16 29 H 0.07 3.27 7.18 -2.39 -0.02 3.26 16 30 H 0.05 2.35 6.93 -2.39 -0.02 2.33 16 31 H 0.28 12.72 8.31 -92.71 -0.77 11.95 16 Total: -1.00 -67.83 280.49 0.01 -67.82 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 1.15 Total: 15.22 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 5.58 Total: -17.44 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -3.83 Total: -109.09 kcal Atomic # 8 Polarization: -119.69 SS G_CDS: -4.63 Total: -124.32 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Atomic # 16 Polarization: 127.67 SS G_CDS: -0.30 Total: 127.37 kcal Total: -67.83 0.01 -67.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903616098.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.572 kcal (2) G-P(sol) polarization free energy of solvation -67.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds