Wall clock time and date at job start Mon Mar 30 2020 01:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47240 * 2 1 4 4 C 1.50702 * 109.46863 * 119.99952 * 2 1 3 5 5 C 1.38248 * 119.97222 * 59.72644 * 4 2 1 6 6 C 1.38196 * 120.02095 * 179.72451 * 5 4 2 7 7 C 1.38463 * 119.97753 * 0.52966 * 6 5 4 8 8 F 1.35095 * 120.02826 * 179.72702 * 7 6 5 9 9 C 1.38458 * 119.94584 * 359.74421 * 7 6 5 10 10 C 1.38197 * 119.97361 * 0.02562 * 9 7 6 11 11 S 1.81398 * 109.47055 * 240.00001 * 2 1 3 12 12 O 1.42105 * 108.57879 * 305.51255 * 11 2 1 13 13 O 1.42097 * 108.57629 * 174.49016 * 11 2 1 14 14 C 1.81391 * 101.92304 * 60.00174 * 11 2 1 15 15 C 1.50695 * 109.47313 * 180.02562 * 14 11 2 16 16 H 1.08001 * 120.00083 * 359.97438 * 15 14 11 17 17 C 1.37879 * 120.00122 * 180.02562 * 15 14 11 18 18 N 1.31521 * 120.00090 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00041 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47146 * 90.00243 * 19 17 15 21 21 H 1.48501 * 109.46853 * 210.00282 * 19 17 15 22 22 H 1.48497 * 109.47001 * 330.00013 * 19 17 15 23 23 H 1.09004 * 109.47067 * 300.00382 * 1 2 3 24 24 H 1.09004 * 109.47046 * 59.99809 * 1 2 3 25 25 H 1.08998 * 109.47240 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.98646 * 359.97438 * 5 4 2 27 27 H 1.07999 * 120.01313 * 180.29627 * 6 5 4 28 28 H 1.07998 * 120.01131 * 179.97438 * 9 7 6 29 29 H 1.08003 * 119.98575 * 179.97438 * 10 9 7 30 30 H 1.09003 * 109.47583 * 300.00163 * 14 11 2 31 31 H 1.09003 * 109.47643 * 59.99714 * 14 11 2 32 32 H 0.96993 * 120.00295 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6933 -2.0323 1.4516 6 6 2.1580 -2.6864 2.5767 7 6 2.9544 -2.0142 3.4884 8 9 3.4047 -2.6511 4.5914 9 6 3.2886 -0.6886 3.2687 10 6 2.8266 -0.0380 2.1404 11 16 2.1347 -0.8551 -1.4811 12 8 1.5479 -2.1485 -1.5284 13 8 3.5496 -0.7331 -1.5284 14 6 1.4230 0.1514 -2.8118 15 6 1.8271 -0.4211 -4.1458 16 1 2.4502 -1.3023 -4.1889 17 6 1.4023 0.1804 -5.3115 18 7 1.7546 -0.3196 -6.4758 19 14 0.3252 1.7048 -5.2370 20 1 1.1833 2.9167 -5.2171 21 1 -0.5597 1.7443 -6.4289 22 1 -0.5041 1.6652 -4.0059 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.0684 -2.5551 0.7426 27 1 1.8970 -3.7205 2.7469 28 1 3.9094 -0.1632 3.9793 29 1 3.0869 0.9961 1.9691 30 1 0.3361 0.1471 -2.7291 31 1 1.7894 1.1747 -2.7291 32 1 1.4554 0.1033 -7.2958 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265687.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:55 Heat of formation + Delta-G solvation = -122.971040 kcal Electronic energy + Delta-G solvation = -18660.797284 eV Core-core repulsion = 15434.045937 eV Total energy + Delta-G solvation = -3226.751346 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.96717 -40.37349 -37.86083 -36.85682 -35.39163 -35.20152 -32.21480 -31.85450 -30.03273 -25.37693 -25.05274 -24.11099 -22.49966 -19.64821 -19.38703 -18.73365 -17.87418 -17.52748 -17.13504 -16.75884 -16.64562 -16.32135 -15.85003 -15.33881 -14.75932 -14.62260 -14.51504 -14.26440 -13.92923 -13.77691 -13.62687 -13.39811 -12.99202 -12.91448 -12.82717 -12.59268 -12.38456 -12.17148 -12.02534 -11.80988 -11.52729 -10.97635 -10.89003 -10.17132 -9.63312 -8.40349 -6.57078 -0.90148 0.06889 0.17214 1.37111 1.41552 1.52466 2.10471 2.32237 2.46504 2.83383 2.90425 3.16283 3.22586 3.38194 3.63758 3.88447 3.92563 4.13072 4.27860 4.36710 4.42756 4.59847 4.71012 4.81063 4.90639 4.91843 5.05889 5.14574 5.19068 5.31732 5.36104 5.80183 5.86513 6.48502 7.10303 8.75666 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.041902 B = 0.004880 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.063396 B = 5735.914983 C = 5925.308552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.509 4.509 3 H 0.182 0.818 4 C -0.102 4.102 5 C -0.110 4.110 6 C -0.155 4.155 7 C 0.088 3.912 8 F -0.142 7.142 9 C -0.150 4.150 10 C -0.071 4.071 11 S 2.400 3.600 12 O -0.979 6.979 13 O -0.993 6.993 14 C -0.472 4.472 15 C -0.554 4.554 16 H 0.029 0.971 17 C 0.017 3.983 18 N -0.940 5.940 19 Si 0.954 3.046 20 H -0.256 1.256 21 H -0.282 1.282 22 H -0.217 1.217 23 H 0.107 0.893 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.143 0.857 27 H 0.153 0.847 28 H 0.167 0.833 29 H 0.170 0.830 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.266 5.771 20.634 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.619 4.619 3 H 0.200 0.800 4 C -0.104 4.104 5 C -0.129 4.129 6 C -0.174 4.174 7 C 0.068 3.932 8 F -0.121 7.121 9 C -0.168 4.168 10 C -0.090 4.090 11 S 2.591 3.409 12 O -0.976 6.976 13 O -0.990 6.990 14 C -0.604 4.604 15 C -0.592 4.592 16 H 0.047 0.953 17 C -0.183 4.183 18 N -0.578 5.578 19 Si 0.773 3.227 20 H -0.180 1.180 21 H -0.207 1.207 22 H -0.139 1.139 23 H 0.126 0.874 24 H 0.110 0.890 25 H 0.090 0.910 26 H 0.161 0.839 27 H 0.171 0.829 28 H 0.184 0.816 29 H 0.188 0.812 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.702 4.964 20.415 21.334 hybrid contribution -0.294 0.368 -0.544 0.720 sum -3.996 5.332 19.871 20.958 Atomic orbital electron populations 1.21907 0.87244 1.04892 1.06461 1.29015 1.08379 1.13863 1.10688 0.80033 1.19297 1.00629 0.94377 0.96050 1.21439 0.99442 0.94457 0.97583 1.21316 0.99564 1.02042 0.94464 1.17982 0.98255 0.92159 0.84770 1.91490 1.87508 1.82151 1.50947 1.21475 1.02455 0.92883 1.00028 1.21336 0.94137 1.01723 0.91781 1.08499 0.75479 0.78000 0.78958 1.93416 1.79419 1.38088 1.86701 1.93431 1.30805 1.87827 1.86954 1.28080 1.10191 1.11282 1.10816 1.20392 1.34740 1.13936 0.90143 0.95280 1.26168 0.96807 1.01484 0.93848 1.70048 1.46162 1.42720 0.98834 0.85621 0.79104 0.77670 0.80302 1.18049 1.20713 1.13912 0.87434 0.89016 0.91004 0.83896 0.82917 0.81554 0.81246 0.86367 0.86873 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.75 71.98 0.63 -2.16 16 2 C -0.51 -12.06 2.94 29.85 0.09 -11.97 16 3 H 0.18 2.84 7.87 -2.39 -0.02 2.82 16 4 C -0.10 -2.51 4.78 -19.86 -0.09 -2.60 16 5 C -0.11 -2.93 8.56 22.26 0.19 -2.74 16 6 C -0.16 -3.70 10.03 22.31 0.22 -3.47 16 7 C 0.09 1.99 7.30 22.38 0.16 2.15 16 8 F -0.14 -3.25 17.27 44.97 0.78 -2.47 16 9 C -0.15 -2.86 10.03 22.31 0.22 -2.63 16 10 C -0.07 -1.40 9.67 22.26 0.22 -1.18 16 11 S 2.40 93.69 4.00 -56.49 -0.23 93.46 16 12 O -0.98 -43.82 16.22 -127.37 -2.07 -45.89 16 13 O -0.99 -46.71 18.10 -127.37 -2.30 -49.02 16 14 C -0.47 -19.45 4.18 71.23 0.30 -19.15 16 15 C -0.55 -31.67 9.68 25.60 0.25 -31.42 16 16 H 0.03 1.92 7.96 -2.91 -0.02 1.89 16 17 C 0.02 0.97 5.47 84.65 0.46 1.43 16 18 N -0.94 -57.97 13.96 21.45 0.30 -57.67 16 19 Si 0.95 39.23 27.47 68.60 1.88 41.11 16 20 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 21 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 22 H -0.22 -7.30 6.54 99.48 0.65 -6.65 16 23 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.09 1.52 6.56 -2.39 -0.02 1.50 16 25 H 0.07 1.48 7.29 -2.39 -0.02 1.47 16 26 H 0.14 3.99 6.27 -2.91 -0.02 3.98 16 27 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 28 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 29 H 0.17 2.16 7.94 -2.91 -0.02 2.14 16 30 H 0.12 4.10 5.93 -2.39 -0.01 4.09 16 31 H 0.11 3.90 7.57 -2.39 -0.02 3.88 16 32 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -79.93 289.11 2.09 -77.84 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 1.08 Total: 16.37 kcal Atomic # 6 Polarization: -76.39 SS G_CDS: 2.65 Total: -73.74 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.30 Total: -57.67 kcal Atomic # 8 Polarization: -90.54 SS G_CDS: -4.37 Total: -94.91 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.78 Total: -2.47 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.88 Total: 41.11 kcal Atomic # 16 Polarization: 93.69 SS G_CDS: -0.23 Total: 93.46 kcal Total: -79.93 2.09 -77.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265687.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.128 kcal (2) G-P(sol) polarization free energy of solvation -79.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds