Wall clock time and date at job start Mon Mar 30 2020 01:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00253 * 2 1 4 4 H 1.48497 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47170 * 300.00269 * 3 2 1 6 6 H 1.48504 * 109.47272 * 59.99909 * 3 2 1 7 7 C 1.37884 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99627 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99729 * 359.97438 * 7 2 1 10 10 S 1.81400 * 109.47004 * 180.02562 * 9 7 2 11 11 O 1.42096 * 108.58183 * 65.50876 * 10 9 7 12 12 O 1.42106 * 108.57761 * 294.48630 * 10 9 7 13 13 C 1.81396 * 101.92508 * 180.02562 * 10 9 7 14 14 C 1.50698 * 109.47288 * 179.97438 * 13 10 9 15 15 C 1.38232 * 119.99645 * 90.00157 * 14 13 10 16 16 C 1.38236 * 119.99758 * 179.97438 * 15 14 13 17 17 C 1.38237 * 120.00086 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99984 * 179.97438 * 17 16 15 19 19 F 1.39901 * 109.47086 * 270.00325 * 18 17 16 20 20 C 1.38235 * 119.99857 * 0.25419 * 17 16 15 21 21 C 1.38234 * 119.99987 * 359.49161 * 20 17 16 22 22 H 0.97006 * 119.99790 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47097 * 60.00422 * 9 7 2 24 24 H 1.09000 * 109.47286 * 300.00180 * 9 7 2 25 25 H 1.09005 * 109.47212 * 59.99871 * 13 10 9 26 26 H 1.08999 * 109.47195 * 299.99943 * 13 10 9 27 27 H 1.07998 * 120.00407 * 359.97438 * 15 14 13 28 28 H 1.07998 * 119.99934 * 179.97438 * 16 15 14 29 29 H 1.09002 * 109.47152 * 149.99993 * 18 17 16 30 30 H 1.09001 * 109.46980 * 30.00093 * 18 17 16 31 31 H 1.07998 * 119.99835 * 179.72747 * 20 17 16 32 32 H 1.08001 * 120.00182 * 180.24888 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 16 2.4296 -3.8780 -0.0005 11 8 3.1483 -3.8594 1.2252 12 8 3.1482 -3.8593 -1.2264 13 6 1.3241 -5.3161 -0.0013 14 6 2.1444 -6.5803 -0.0021 15 6 2.5205 -7.1608 1.1948 16 6 3.2725 -8.3207 1.1941 17 6 3.6487 -8.8998 -0.0033 18 6 4.4690 -10.1641 -0.0040 19 9 5.8293 -9.8373 -0.0037 20 6 3.2775 -8.3162 -1.2001 21 6 2.5210 -7.1592 -1.1995 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5566 -0.8903 24 1 0.6246 -2.5570 0.8897 25 1 0.6955 -5.2908 -0.8915 26 1 0.6950 -5.2913 0.8884 27 1 2.2269 -6.7081 2.1303 28 1 3.5667 -8.7740 2.1292 29 1 4.2358 -10.7481 -0.8943 30 1 4.2357 -10.7490 0.8857 31 1 3.5751 -8.7662 -2.1357 32 1 2.2275 -6.7053 -2.1346 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905266548.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:43 Heat of formation + Delta-G solvation = -110.396088 kcal Electronic energy + Delta-G solvation = -18117.663767 eV Core-core repulsion = 14891.457711 eV Total energy + Delta-G solvation = -3226.206056 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.77699 -39.43640 -36.03955 -35.09393 -33.71403 -33.36763 -31.05474 -29.31100 -28.88342 -25.10530 -23.42892 -22.89417 -21.06491 -18.08661 -17.08990 -16.67736 -16.39024 -16.05524 -15.90728 -15.58453 -15.29824 -14.90561 -14.60273 -14.26298 -13.98114 -13.51659 -12.79335 -12.52166 -12.50034 -12.34269 -12.16505 -11.43249 -11.40629 -11.17546 -11.10650 -11.07437 -10.99131 -10.93566 -10.67731 -10.49150 -9.80339 -9.24701 -9.01059 -8.73614 -8.60243 -6.35557 -4.44919 0.66103 1.30487 1.32087 3.19866 3.27013 3.34973 3.60235 3.76035 4.18227 4.27772 4.41070 4.46862 4.60565 4.68542 4.86614 4.93902 4.95576 5.05475 5.36133 5.40394 5.43024 5.55828 5.58149 5.87375 5.95576 6.24486 6.35728 6.46809 6.60383 6.65622 6.84522 7.46492 7.72423 8.57456 9.22451 10.76369 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.044936 B = 0.004008 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.955311 B = 6984.107190 C = 7132.293242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.074 3.926 3 Si 0.906 3.094 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.529 4.529 8 H 0.073 0.927 9 C -0.403 4.403 10 S 2.391 3.609 11 O -0.951 6.951 12 O -0.951 6.951 13 C -0.593 4.593 14 C -0.063 4.063 15 C -0.109 4.109 16 C -0.096 4.096 17 C -0.143 4.143 18 C 0.109 3.891 19 F -0.212 7.212 20 C -0.096 4.096 21 C -0.109 4.109 22 H 0.268 0.732 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.134 0.866 28 H 0.128 0.872 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.128 0.872 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.142 -17.644 -0.004 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.568 4.568 8 H 0.091 0.909 9 C -0.537 4.537 10 S 2.576 3.424 11 O -0.948 6.948 12 O -0.948 6.948 13 C -0.716 4.716 14 C -0.064 4.064 15 C -0.127 4.127 16 C -0.114 4.114 17 C -0.143 4.143 18 C 0.054 3.946 19 F -0.193 7.193 20 C -0.114 4.114 21 C -0.127 4.127 22 H 0.078 0.922 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.156 0.844 26 H 0.156 0.844 27 H 0.152 0.848 28 H 0.146 0.854 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.146 0.854 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.937 -17.589 -0.004 17.696 hybrid contribution -0.657 0.843 0.001 1.069 sum 1.280 -16.746 -0.003 16.795 Atomic orbital electron populations 1.69954 1.06259 1.27647 1.47976 1.24941 0.95043 0.99632 0.93532 0.86286 0.80469 0.81989 0.78047 1.18919 1.20327 1.20324 1.20413 0.93035 0.88399 1.54973 0.90894 1.27533 1.09757 1.09757 1.06695 1.09158 0.79804 0.78171 0.75256 1.93475 1.69778 1.85852 1.45719 1.93476 1.69796 1.85854 1.45703 1.29681 1.15102 1.14983 1.11830 1.19182 0.98062 0.95066 0.94107 1.21189 0.98134 0.95457 0.97961 1.21007 0.97329 0.95644 0.97439 1.20251 1.01331 0.98527 0.94232 1.20771 0.75630 0.94126 1.04028 1.92822 1.33920 1.94349 1.98164 1.21006 0.97302 0.95652 0.97453 1.21190 0.98092 0.95500 0.97954 0.92240 0.89640 0.89654 0.84440 0.84444 0.84796 0.85389 0.89949 0.89950 0.85389 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.64 13.29 55.43 0.74 -23.90 16 2 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -14.59 9.13 -34.44 -0.31 -14.91 16 8 H 0.07 2.01 7.71 -52.49 -0.40 1.61 16 9 C -0.40 -9.39 5.56 36.00 0.20 -9.19 16 10 S 2.39 49.15 4.62 -107.50 -0.50 48.65 16 11 O -0.95 -22.13 18.10 -57.83 -1.05 -23.18 16 12 O -0.95 -22.13 18.10 -57.83 -1.05 -23.18 16 13 C -0.59 -8.80 5.93 36.00 0.21 -8.59 16 14 C -0.06 -0.95 5.14 -104.63 -0.54 -1.49 16 15 C -0.11 -1.52 9.70 -39.58 -0.38 -1.91 16 16 C -0.10 -1.18 9.70 -39.58 -0.38 -1.56 16 17 C -0.14 -1.68 5.60 -104.62 -0.59 -2.26 16 18 C 0.11 0.97 7.67 36.01 0.28 1.25 16 19 F -0.21 -2.59 17.34 2.25 0.04 -2.55 16 20 C -0.10 -1.18 9.70 -39.58 -0.38 -1.56 16 21 C -0.11 -1.52 9.70 -39.58 -0.38 -1.91 16 22 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 23 H 0.09 1.93 8.14 -51.92 -0.42 1.50 16 24 H 0.09 1.92 8.14 -51.92 -0.42 1.50 16 25 H 0.14 1.69 8.09 -51.92 -0.42 1.27 16 26 H 0.14 1.69 8.09 -51.92 -0.42 1.27 16 27 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 29 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 302.48 15.07 4.56 4.56 Total: -1.00 -34.66 302.48 -8.41 -43.08 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -3.76 Total: 0.74 kcal Atomic # 6 Polarization: -37.81 SS G_CDS: -2.38 Total: -40.19 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.74 Total: -23.90 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -2.09 Total: -46.36 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 49.15 SS G_CDS: -0.50 Total: 48.65 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.66 -8.41 -43.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266548.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.320 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds