Wall clock time and date at job start Mon Mar 30 2020 01:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00253 * 2 1 4 4 H 1.48497 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47170 * 300.00269 * 3 2 1 6 6 H 1.48504 * 109.47272 * 59.99909 * 3 2 1 7 7 C 1.37884 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99627 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99729 * 359.97438 * 7 2 1 10 10 S 1.81400 * 109.47004 * 180.02562 * 9 7 2 11 11 O 1.42096 * 108.58183 * 65.50876 * 10 9 7 12 12 O 1.42106 * 108.57761 * 294.48630 * 10 9 7 13 13 C 1.81396 * 101.92508 * 180.02562 * 10 9 7 14 14 C 1.50698 * 109.47288 * 179.97438 * 13 10 9 15 15 C 1.38232 * 119.99645 * 90.00157 * 14 13 10 16 16 C 1.38236 * 119.99758 * 179.97438 * 15 14 13 17 17 C 1.38237 * 120.00086 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99984 * 179.97438 * 17 16 15 19 19 F 1.39901 * 109.47086 * 270.00325 * 18 17 16 20 20 C 1.38235 * 119.99857 * 0.25419 * 17 16 15 21 21 C 1.38234 * 119.99987 * 359.49161 * 20 17 16 22 22 H 0.97006 * 119.99790 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47097 * 60.00422 * 9 7 2 24 24 H 1.09000 * 109.47286 * 300.00180 * 9 7 2 25 25 H 1.09005 * 109.47212 * 59.99871 * 13 10 9 26 26 H 1.08999 * 109.47195 * 299.99943 * 13 10 9 27 27 H 1.07998 * 120.00407 * 359.97438 * 15 14 13 28 28 H 1.07998 * 119.99934 * 179.97438 * 16 15 14 29 29 H 1.09002 * 109.47152 * 149.99993 * 18 17 16 30 30 H 1.09001 * 109.46980 * 30.00093 * 18 17 16 31 31 H 1.07998 * 119.99835 * 179.72747 * 20 17 16 32 32 H 1.08001 * 120.00182 * 180.24888 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 16 2.4296 -3.8780 -0.0005 11 8 3.1483 -3.8594 1.2252 12 8 3.1482 -3.8593 -1.2264 13 6 1.3241 -5.3161 -0.0013 14 6 2.1444 -6.5803 -0.0021 15 6 2.5205 -7.1608 1.1948 16 6 3.2725 -8.3207 1.1941 17 6 3.6487 -8.8998 -0.0033 18 6 4.4690 -10.1641 -0.0040 19 9 5.8293 -9.8373 -0.0037 20 6 3.2775 -8.3162 -1.2001 21 6 2.5210 -7.1592 -1.1995 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5566 -0.8903 24 1 0.6246 -2.5570 0.8897 25 1 0.6955 -5.2908 -0.8915 26 1 0.6950 -5.2913 0.8884 27 1 2.2269 -6.7081 2.1303 28 1 3.5667 -8.7740 2.1292 29 1 4.2358 -10.7481 -0.8943 30 1 4.2357 -10.7490 0.8857 31 1 3.5751 -8.7662 -2.1357 32 1 2.2275 -6.7053 -2.1346 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905266548.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:43 Heat of formation + Delta-G solvation = -133.953692 kcal Electronic energy + Delta-G solvation = -18118.685301 eV Core-core repulsion = 14891.457711 eV Total energy + Delta-G solvation = -3227.227590 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.58895 -40.40355 -37.78684 -36.83473 -35.40194 -34.72856 -32.00977 -31.09151 -30.05753 -26.21378 -25.24349 -23.85503 -22.05025 -19.73184 -18.96711 -17.75490 -17.56627 -17.33086 -17.03299 -16.75475 -16.72664 -16.39489 -15.83240 -15.66938 -15.03919 -14.49012 -14.44679 -14.03234 -13.83868 -13.62483 -13.42024 -13.31388 -12.95857 -12.87789 -12.73942 -12.55899 -12.22721 -12.06576 -11.88824 -11.80624 -11.72302 -11.00431 -10.78307 -9.98021 -9.72501 -8.42088 -6.57995 -0.86273 0.22150 0.35024 1.36223 1.37087 1.51426 2.16127 2.30393 2.60015 2.90516 2.91499 3.24599 3.41649 3.63955 3.71017 3.96675 3.98066 4.14472 4.29879 4.41338 4.50774 4.62611 4.74781 4.77296 4.78032 4.90530 5.02428 5.26345 5.36235 5.42060 5.45039 5.74573 5.89454 6.51858 7.12579 8.70534 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.044936 B = 0.004008 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.955311 B = 6984.107190 C = 7132.293242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.564 4.564 8 H 0.058 0.942 9 C -0.424 4.424 10 S 2.404 3.596 11 O -0.987 6.987 12 O -0.987 6.987 13 C -0.556 4.556 14 C -0.096 4.096 15 C -0.124 4.124 16 C -0.103 4.103 17 C -0.142 4.142 18 C 0.104 3.896 19 F -0.231 7.231 20 C -0.103 4.103 21 C -0.124 4.124 22 H 0.274 0.726 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.167 0.833 26 H 0.167 0.833 27 H 0.141 0.859 28 H 0.154 0.846 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.154 0.846 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.036 -19.600 -0.002 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.177 4.177 3 Si 0.784 3.216 4 H -0.192 1.192 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.602 4.602 8 H 0.076 0.924 9 C -0.557 4.557 10 S 2.595 3.405 11 O -0.984 6.984 12 O -0.984 6.984 13 C -0.685 4.685 14 C -0.098 4.098 15 C -0.143 4.143 16 C -0.121 4.121 17 C -0.143 4.143 18 C 0.050 3.950 19 F -0.212 7.212 20 C -0.121 4.121 21 C -0.143 4.143 22 H 0.083 0.917 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.185 0.815 26 H 0.185 0.815 27 H 0.159 0.841 28 H 0.172 0.828 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.172 0.828 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.849 -19.455 -0.002 19.543 hybrid contribution -0.640 1.230 0.000 1.386 sum 1.209 -18.225 -0.002 18.265 Atomic orbital electron populations 1.70007 1.07264 1.28775 1.48455 1.25779 0.96001 1.02906 0.93059 0.85456 0.78978 0.78281 0.78930 1.19241 1.18996 1.18985 1.20794 0.92909 0.91005 1.55498 0.92418 1.27622 1.10652 1.10702 1.06686 1.08330 0.79572 0.78839 0.73795 1.93419 1.71279 1.86953 1.46760 1.93421 1.71297 1.86954 1.46744 1.29266 1.13555 1.10675 1.15021 1.19321 0.99827 0.95467 0.95153 1.21473 0.98544 0.96330 0.97999 1.21399 0.96582 0.95101 0.99004 1.20687 1.00513 0.99240 0.93834 1.21088 0.73823 0.93091 1.06978 1.92785 1.35584 1.94511 1.98367 1.21398 0.96565 0.95113 0.99021 1.21473 0.98505 0.96369 0.97990 0.91685 0.89456 0.89471 0.81470 0.81470 0.84091 0.82797 0.87124 0.87122 0.82808 0.84095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.29 13.29 21.45 0.28 -51.01 16 2 C 0.03 1.42 5.46 84.66 0.46 1.88 16 3 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.56 -32.08 9.13 25.60 0.23 -31.85 16 8 H 0.06 3.34 7.71 -2.91 -0.02 3.32 16 9 C -0.42 -20.31 5.56 71.23 0.40 -19.91 16 10 S 2.40 100.03 4.62 -56.49 -0.26 99.77 16 11 O -0.99 -46.92 18.10 -127.37 -2.31 -49.22 16 12 O -0.99 -46.92 18.10 -127.37 -2.30 -49.22 16 13 C -0.56 -15.54 5.93 71.24 0.42 -15.12 16 14 C -0.10 -2.74 5.14 -19.87 -0.10 -2.84 16 15 C -0.12 -3.26 9.70 22.27 0.22 -3.05 16 16 C -0.10 -2.26 9.70 22.27 0.22 -2.04 16 17 C -0.14 -2.91 5.60 -19.86 -0.11 -3.03 16 18 C 0.10 1.49 7.67 71.24 0.55 2.03 16 19 F -0.23 -5.07 17.34 44.97 0.78 -4.29 16 20 C -0.10 -2.26 9.70 22.27 0.22 -2.05 16 21 C -0.12 -3.26 9.70 22.27 0.22 -3.05 16 22 H 0.27 14.32 8.31 -92.70 -0.77 13.54 16 23 H 0.09 4.04 8.14 -2.39 -0.02 4.02 16 24 H 0.09 4.03 8.14 -2.39 -0.02 4.01 16 25 H 0.17 3.70 8.09 -2.39 -0.02 3.68 16 26 H 0.17 3.70 8.09 -2.39 -0.02 3.68 16 27 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 28 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.11 0.97 8.09 -2.39 -0.02 0.95 16 30 H 0.11 0.97 8.09 -2.39 -0.02 0.95 16 31 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 32 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -76.66 302.48 2.05 -74.61 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 1.12 Total: 12.98 kcal Atomic # 6 Polarization: -81.74 SS G_CDS: 2.71 Total: -79.02 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.28 Total: -51.01 kcal Atomic # 8 Polarization: -93.83 SS G_CDS: -4.61 Total: -98.44 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.78 Total: -4.29 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 100.03 SS G_CDS: -0.26 Total: 99.77 kcal Total: -76.66 2.05 -74.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266548.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.343 kcal (2) G-P(sol) polarization free energy of solvation -76.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds