Wall clock time and date at job start Mon Mar 30 2020 01:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.29957 * 126.28604 * 2 1 4 4 O 1.21295 * 110.24679 * 179.68403 * 3 2 1 5 5 C 1.33642 * 109.81660 * 0.46756 * 4 3 2 6 6 C 1.50699 * 126.55161 * 179.80150 * 5 4 3 7 7 H 1.09002 * 109.46959 * 194.68733 * 6 5 4 8 8 C 1.53000 * 109.47083 * 74.68518 * 6 5 4 9 9 O 1.45198 * 109.47028 * 314.68891 * 6 5 4 10 10 C 1.34232 * 116.99973 * 210.00209 * 9 6 5 11 11 O 1.20828 * 120.00187 * 359.97438 * 10 9 6 12 12 C 1.50697 * 120.00321 * 180.02562 * 10 9 6 13 13 S 1.81004 * 109.47482 * 179.97438 * 12 10 9 14 14 C 1.76194 * 100.00118 * 179.97438 * 13 12 10 15 15 H 1.08005 * 120.00423 * 0.02562 * 14 13 12 16 16 C 1.38801 * 120.00063 * 179.97438 * 14 13 12 17 17 N 1.31632 * 119.99851 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 119.99851 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47663 * 89.99488 * 18 16 14 20 20 H 1.48504 * 109.47105 * 209.99976 * 18 16 14 21 21 H 1.48504 * 109.47208 * 329.99254 * 18 16 14 22 22 N 1.31130 * 106.89392 * 359.54156 * 5 4 3 23 23 H 1.09006 * 109.47165 * 270.02254 * 1 2 3 24 24 H 1.09000 * 109.47590 * 30.02514 * 1 2 3 25 25 H 1.09004 * 109.46880 * 150.02792 * 1 2 3 26 26 H 1.09001 * 109.47194 * 179.97438 * 8 6 5 27 27 H 1.08992 * 109.47399 * 299.99938 * 8 6 5 28 28 H 1.09004 * 109.46724 * 60.00424 * 8 6 5 29 29 H 1.09006 * 109.47040 * 299.99732 * 12 10 9 30 30 H 1.09005 * 109.47258 * 59.99528 * 12 10 9 31 31 H 0.97002 * 119.99573 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4417 0.7124 0.0063 5 6 3.5298 -0.6211 0.0008 6 6 4.7969 -1.4368 0.0013 7 1 4.5652 -2.4682 -0.2645 8 6 5.4275 -1.3986 1.3948 9 8 5.7281 -0.8851 -0.9665 10 6 6.5791 -1.7430 -1.5511 11 8 6.5472 -2.9161 -1.2633 12 6 7.5750 -1.2430 -2.5655 13 16 8.5722 -2.6290 -3.1661 14 6 9.6186 -1.7830 -4.3035 15 1 9.5142 -0.7171 -4.4433 16 6 10.5777 -2.4861 -5.0193 17 7 11.3590 -1.8540 -5.8694 18 14 10.7587 -4.3294 -4.7772 19 1 9.8778 -5.0435 -5.7359 20 1 12.1707 -4.7235 -5.0142 21 1 10.3716 -4.6866 -3.3887 22 7 2.3030 -1.0840 0.0005 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8903 -0.5134 26 1 6.3437 -1.9890 1.3954 27 1 5.6592 -0.3673 1.6606 28 1 4.7284 -1.8128 2.1214 29 1 7.0443 -0.7876 -3.4018 30 1 8.2257 -0.5019 -2.1012 31 1 12.0295 -2.3453 -6.3694 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915387901.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:58 Heat of formation + Delta-G solvation = -17.665074 kcal Electronic energy + Delta-G solvation = -17903.754503 eV Core-core repulsion = 14701.489527 eV Total energy + Delta-G solvation = -3202.264975 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.89803 -40.55474 -36.93601 -36.37689 -34.06242 -32.53152 -31.50606 -29.71912 -29.40631 -25.75170 -25.36749 -23.74292 -22.20944 -20.68928 -18.45755 -18.16900 -18.00385 -17.25065 -16.54655 -16.25004 -15.10997 -14.84407 -14.47061 -14.18296 -13.97636 -13.88302 -13.44099 -13.22453 -12.87393 -12.66166 -12.57841 -12.41029 -11.79811 -11.72668 -11.38857 -11.32642 -11.08713 -11.04135 -10.81029 -10.42723 -10.21809 -9.92330 -9.09421 -8.68494 -7.08228 -6.37177 -4.12473 0.72609 1.77876 2.13773 2.28478 2.47247 2.87993 3.26311 3.36450 3.41837 3.49267 3.75241 4.24031 4.38592 4.46278 4.57884 4.71863 4.93126 5.00579 5.01593 5.04775 5.17044 5.34274 5.38273 5.52753 5.56255 5.63984 5.74806 5.87315 6.25479 7.76632 7.83822 7.85754 8.34580 9.07518 10.71837 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.042197 B = 0.003507 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.390494 B = 7983.057640 C = 8154.857718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.167 3.833 3 N -0.382 5.382 4 O 0.096 5.904 5 C 0.190 3.810 6 C 0.182 3.818 7 H 0.133 0.867 8 C -0.168 4.168 9 O -0.348 6.348 10 C 0.484 3.516 11 O -0.481 6.481 12 C -0.100 4.100 13 S -0.136 6.136 14 C -0.524 4.524 15 H 0.092 0.908 16 C 0.098 3.902 17 N -0.876 5.876 18 Si 0.856 3.144 19 H -0.266 1.266 20 H -0.272 1.272 21 H -0.235 1.235 22 N -0.469 5.469 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.081 2.782 13.690 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 N -0.088 5.088 4 O 0.037 5.963 5 C -0.031 4.031 6 C 0.124 3.876 7 H 0.151 0.849 8 C -0.226 4.226 9 O -0.266 6.266 10 C 0.325 3.675 11 O -0.365 6.365 12 C -0.247 4.247 13 S 0.090 5.910 14 C -0.671 4.671 15 H 0.110 0.890 16 C -0.112 4.112 17 N -0.512 5.512 18 Si 0.681 3.319 19 H -0.191 1.191 20 H -0.198 1.198 21 H -0.159 1.159 22 N -0.205 5.205 23 H 0.108 0.892 24 H 0.107 0.893 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.635 1.833 13.926 22.545 hybrid contribution 0.404 0.528 -0.473 0.816 sum -17.231 2.361 13.453 21.988 Atomic orbital electron populations 1.20161 0.82592 1.04902 1.04384 1.25955 1.00700 0.83225 1.00679 1.74673 0.89433 1.23930 1.20810 1.85350 1.22113 1.24296 1.64591 1.28263 0.95986 0.82308 0.96539 1.20762 0.80621 0.95514 0.90678 0.84930 1.22260 1.02784 1.04742 0.92806 1.86640 1.45034 1.42092 1.52820 1.23417 0.79620 0.84572 0.79861 1.90689 1.67786 1.17670 1.60358 1.23052 0.97985 1.05299 0.98397 1.84813 1.41388 1.10730 1.54088 1.22251 1.20804 0.98059 1.26023 0.88957 1.24698 0.93970 0.99009 0.93496 1.69931 1.20088 1.36736 1.24430 0.86751 0.78607 0.84910 0.81656 1.19102 1.19754 1.15918 1.71878 0.99152 1.29621 1.19840 0.89202 0.89319 0.88855 0.89178 0.90352 0.89827 0.86906 0.86671 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 36.00 0.38 -0.05 16 2 C 0.17 1.91 8.22 -156.37 -1.28 0.62 16 3 N -0.38 -4.93 12.16 30.90 0.38 -4.55 16 4 O 0.10 1.26 11.31 18.10 0.20 1.46 16 5 C 0.19 2.35 7.41 -13.06 -0.10 2.25 16 6 C 0.18 2.14 3.12 -27.88 -0.09 2.06 16 7 H 0.13 1.60 7.16 -51.93 -0.37 1.23 16 8 C -0.17 -1.53 9.53 37.16 0.35 -1.18 16 9 O -0.35 -4.89 9.86 -40.11 -0.40 -5.28 16 10 C 0.48 8.05 7.95 36.00 0.29 8.34 16 11 O -0.48 -8.97 15.08 -18.75 -0.28 -9.25 16 12 C -0.10 -1.82 6.27 36.00 0.23 -1.60 16 13 S -0.14 -3.24 18.55 -107.50 -1.99 -5.23 16 14 C -0.52 -14.48 10.04 30.94 0.31 -14.17 16 15 H 0.09 2.67 8.03 -52.48 -0.42 2.24 16 16 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 17 N -0.88 -25.73 13.97 55.49 0.78 -24.96 16 18 Si 0.86 20.88 27.74 -169.99 -4.71 16.16 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.24 -5.65 6.74 56.52 0.38 -5.27 16 22 N -0.47 -5.91 11.55 -9.87 -0.11 -6.02 16 23 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.11 1.95 8.14 -51.91 -0.42 1.52 16 30 H 0.12 1.94 8.14 -51.91 -0.42 1.52 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 298.34 15.07 4.50 4.50 Total: -1.00 -31.85 298.34 -4.99 -36.84 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -3.33 Total: -2.61 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -0.01 Total: -1.06 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 1.04 Total: -35.53 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.47 Total: -13.08 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.71 Total: 16.16 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -1.99 Total: -5.23 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.85 -4.99 -36.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915387901.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.179 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds