Wall clock time and date at job start Mon Mar 30 2020 01:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.29957 * 126.28604 * 2 1 4 4 O 1.21295 * 110.24679 * 179.68403 * 3 2 1 5 5 C 1.33642 * 109.81660 * 0.46756 * 4 3 2 6 6 C 1.50699 * 126.55161 * 179.80150 * 5 4 3 7 7 H 1.09002 * 109.46959 * 194.68733 * 6 5 4 8 8 C 1.53000 * 109.47083 * 74.68518 * 6 5 4 9 9 O 1.45198 * 109.47028 * 314.68891 * 6 5 4 10 10 C 1.34232 * 116.99973 * 210.00209 * 9 6 5 11 11 O 1.20828 * 120.00187 * 359.97438 * 10 9 6 12 12 C 1.50697 * 120.00321 * 180.02562 * 10 9 6 13 13 S 1.81004 * 109.47482 * 179.97438 * 12 10 9 14 14 C 1.76194 * 100.00118 * 179.97438 * 13 12 10 15 15 H 1.08005 * 120.00423 * 0.02562 * 14 13 12 16 16 C 1.38801 * 120.00063 * 179.97438 * 14 13 12 17 17 N 1.31632 * 119.99851 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 119.99851 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47663 * 89.99488 * 18 16 14 20 20 H 1.48504 * 109.47105 * 209.99976 * 18 16 14 21 21 H 1.48504 * 109.47208 * 329.99254 * 18 16 14 22 22 N 1.31130 * 106.89392 * 359.54156 * 5 4 3 23 23 H 1.09006 * 109.47165 * 270.02254 * 1 2 3 24 24 H 1.09000 * 109.47590 * 30.02514 * 1 2 3 25 25 H 1.09004 * 109.46880 * 150.02792 * 1 2 3 26 26 H 1.09001 * 109.47194 * 179.97438 * 8 6 5 27 27 H 1.08992 * 109.47399 * 299.99938 * 8 6 5 28 28 H 1.09004 * 109.46724 * 60.00424 * 8 6 5 29 29 H 1.09006 * 109.47040 * 299.99732 * 12 10 9 30 30 H 1.09005 * 109.47258 * 59.99528 * 12 10 9 31 31 H 0.97002 * 119.99573 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4417 0.7124 0.0063 5 6 3.5298 -0.6211 0.0008 6 6 4.7969 -1.4368 0.0013 7 1 4.5652 -2.4682 -0.2645 8 6 5.4275 -1.3986 1.3948 9 8 5.7281 -0.8851 -0.9665 10 6 6.5791 -1.7430 -1.5511 11 8 6.5472 -2.9161 -1.2633 12 6 7.5750 -1.2430 -2.5655 13 16 8.5722 -2.6290 -3.1661 14 6 9.6186 -1.7830 -4.3035 15 1 9.5142 -0.7171 -4.4433 16 6 10.5777 -2.4861 -5.0193 17 7 11.3590 -1.8540 -5.8694 18 14 10.7587 -4.3294 -4.7772 19 1 9.8778 -5.0435 -5.7359 20 1 12.1707 -4.7235 -5.0142 21 1 10.3716 -4.6866 -3.3887 22 7 2.3030 -1.0840 0.0005 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8903 -0.5134 26 1 6.3437 -1.9890 1.3954 27 1 5.6592 -0.3673 1.6606 28 1 4.7284 -1.8128 2.1214 29 1 7.0443 -0.7876 -3.4018 30 1 8.2257 -0.5019 -2.1012 31 1 12.0295 -2.3453 -6.3694 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915387901.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:58 Heat of formation + Delta-G solvation = -39.231297 kcal Electronic energy + Delta-G solvation = -17904.689684 eV Core-core repulsion = 14701.489527 eV Total energy + Delta-G solvation = -3203.200157 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.82278 -41.82151 -38.16432 -37.29341 -35.03249 -34.67964 -32.45437 -31.06850 -30.11762 -27.89066 -26.29666 -24.64238 -23.34675 -21.76413 -20.01576 -19.41509 -19.06520 -18.60245 -17.67971 -17.49571 -17.09734 -16.06284 -16.01003 -15.27607 -14.94887 -14.92368 -14.53040 -14.49129 -14.00222 -13.82400 -13.37423 -13.35031 -13.31425 -13.01603 -12.77460 -12.68363 -12.63855 -12.26365 -12.11827 -11.90992 -11.73953 -11.17267 -11.13414 -10.62656 -9.05189 -8.51479 -6.25068 -0.24228 0.64781 0.94556 0.99790 1.28560 1.33945 1.47661 1.51515 1.72088 2.24455 2.47998 2.67594 2.87007 2.92512 3.45673 3.61206 3.65725 3.87676 4.10913 4.33491 4.41186 4.50174 4.55750 4.57780 4.60457 4.73361 4.98925 5.03841 5.07521 5.70650 6.13156 6.46144 6.90991 6.92443 8.60890 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.042197 B = 0.003507 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.390494 B = 7983.057640 C = 8154.857718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.169 3.831 3 N -0.401 5.401 4 O 0.083 5.917 5 C 0.190 3.810 6 C 0.181 3.819 7 H 0.132 0.868 8 C -0.163 4.163 9 O -0.343 6.343 10 C 0.499 3.501 11 O -0.502 6.502 12 C -0.092 4.092 13 S -0.154 6.154 14 C -0.533 4.533 15 H 0.065 0.935 16 C 0.046 3.954 17 N -0.916 5.916 18 Si 0.914 3.086 19 H -0.262 1.262 20 H -0.261 1.261 21 H -0.230 1.230 22 N -0.483 5.483 23 H 0.110 0.890 24 H 0.100 0.900 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.531 2.176 15.013 23.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 N -0.111 5.111 4 O 0.027 5.973 5 C -0.031 4.031 6 C 0.124 3.876 7 H 0.150 0.850 8 C -0.221 4.221 9 O -0.260 6.260 10 C 0.340 3.660 11 O -0.388 6.388 12 C -0.240 4.240 13 S 0.072 5.928 14 C -0.680 4.680 15 H 0.083 0.917 16 C -0.160 4.160 17 N -0.554 5.554 18 Si 0.736 3.264 19 H -0.187 1.187 20 H -0.185 1.185 21 H -0.154 1.154 22 N -0.219 5.219 23 H 0.128 0.872 24 H 0.119 0.881 25 H 0.123 0.877 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.122 0.878 29 H 0.143 0.857 30 H 0.150 0.850 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.079 1.246 15.260 24.463 hybrid contribution 0.697 0.844 -0.822 1.369 sum -18.382 2.090 14.438 23.468 Atomic orbital electron populations 1.20428 0.79629 1.06033 1.06030 1.26767 1.02336 0.82426 0.98857 1.74675 0.89527 1.24674 1.22237 1.85327 1.22461 1.24467 1.65091 1.28340 0.96164 0.82275 0.96334 1.21041 0.80143 0.95112 0.91351 0.85044 1.22285 1.02936 1.05489 0.91387 1.86584 1.44857 1.41388 1.53180 1.22847 0.79528 0.84176 0.79401 1.90689 1.68519 1.18493 1.61107 1.22974 0.98215 1.03253 0.99573 1.84598 1.41697 1.13297 1.53163 1.22428 1.21518 0.97270 1.26813 0.91672 1.25579 0.93748 1.03392 0.93258 1.70019 1.21061 1.38671 1.25631 0.85876 0.79159 0.79589 0.81818 1.18674 1.18488 1.15364 1.71913 0.99375 1.30238 1.20344 0.87166 0.88111 0.87747 0.89396 0.89497 0.87811 0.85702 0.84984 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.71 10.51 71.23 0.75 0.04 16 2 C 0.17 3.56 8.22 138.46 1.14 4.70 16 3 N -0.40 -9.88 12.16 -60.32 -0.73 -10.62 16 4 O 0.08 2.07 11.31 74.86 0.85 2.92 16 5 C 0.19 4.43 7.41 88.38 0.65 5.09 16 6 C 0.18 3.97 3.12 29.85 0.09 4.06 16 7 H 0.13 2.98 7.16 -2.39 -0.02 2.96 16 8 C -0.16 -2.64 9.53 71.98 0.69 -1.96 16 9 O -0.34 -9.07 9.86 -50.62 -0.50 -9.57 16 10 C 0.50 15.82 7.95 71.23 0.57 16.39 16 11 O -0.50 -18.01 15.08 21.96 0.33 -17.68 16 12 C -0.09 -3.26 6.27 71.23 0.45 -2.81 16 13 S -0.15 -7.20 18.55 -56.49 -1.05 -8.25 16 14 C -0.53 -29.69 10.04 67.95 0.68 -29.01 16 15 H 0.07 3.86 8.03 -2.91 -0.02 3.84 16 16 C 0.05 2.60 5.50 84.86 0.47 3.07 16 17 N -0.92 -54.50 13.97 21.65 0.30 -54.20 16 18 Si 0.91 42.81 27.74 68.60 1.90 44.71 16 19 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.23 -10.50 6.74 99.48 0.67 -9.83 16 22 N -0.48 -11.40 11.55 -303.21 -3.50 -14.90 16 23 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 30 H 0.13 4.26 8.14 -2.39 -0.02 4.24 16 31 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -67.89 298.34 4.20 -63.70 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: 1.12 Total: 4.32 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 5.48 Total: -0.43 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -3.93 Total: -79.72 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: 0.68 Total: -24.33 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.90 Total: 44.71 kcal Atomic # 16 Polarization: -7.20 SS G_CDS: -1.05 Total: -8.25 kcal Total: -67.89 4.20 -63.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915387901.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.464 kcal (2) G-P(sol) polarization free energy of solvation -67.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds