Wall clock time and date at job start Mon Mar 30 2020 00:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21528 * 120.00267 * 0.02562 * 13 12 2 15 15 C 1.48010 * 119.99786 * 180.02562 * 13 12 2 16 16 C 1.39856 * 120.93457 * 359.71914 * 15 13 12 17 17 C 1.38204 * 119.02173 * 179.80289 * 16 15 13 18 18 Cl 1.73600 * 119.53064 * 180.21033 * 17 16 15 19 19 N 1.31942 * 120.94350 * 0.48483 * 17 16 15 20 20 C 1.31753 * 122.07953 * 359.74170 * 19 17 16 21 21 C 1.38489 * 120.86397 * 0.02562 * 20 19 17 22 22 F 1.35098 * 120.52117 * 179.97438 * 21 20 19 23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 28 28 H 1.08003 * 120.48798 * 0.02562 * 16 15 13 29 29 H 1.07997 * 119.56647 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8584 1.1612 -2.4115 15 6 2.6398 -0.7158 -3.5658 16 6 2.9831 -2.0709 -3.5239 17 6 3.4351 -2.6841 -4.6770 18 17 3.8597 -4.3670 -4.6413 19 7 3.5537 -2.0074 -5.8034 20 6 3.2464 -0.7289 -5.8874 21 6 2.7811 -0.0360 -4.7822 22 9 2.4685 1.2749 -4.8760 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7089 1.1611 3.4845 27 1 2.2490 -1.6317 -1.1527 28 1 2.8928 -2.6309 -2.6048 29 1 3.3594 -0.2145 -6.8302 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931155051.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:37 Heat of formation + Delta-G solvation = -72.718502 kcal Electronic energy + Delta-G solvation = -18118.678236 eV Core-core repulsion = 14788.521954 eV Total energy + Delta-G solvation = -3330.156283 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.047 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.16914 -41.70277 -40.29724 -37.79561 -36.85781 -34.77747 -33.84452 -31.92353 -30.82688 -27.37682 -26.42667 -24.83330 -23.19349 -21.58337 -20.00397 -18.87177 -18.58558 -18.03734 -17.24480 -17.09334 -16.93922 -15.99229 -15.83297 -15.74150 -15.25102 -15.12987 -14.76253 -14.43839 -13.76631 -13.68742 -13.04282 -12.92345 -12.76574 -12.71821 -12.44190 -12.29778 -12.17817 -11.54386 -11.33430 -11.15866 -10.85997 -10.61612 -10.08586 -9.91913 -8.19173 -6.37186 -0.81825 -0.51586 0.53707 1.46645 1.48288 1.55999 1.62402 2.05450 2.33142 2.43757 2.65318 3.10923 3.12341 3.32018 3.43688 3.73681 4.05836 4.27750 4.48334 4.71855 4.88148 5.03650 5.07219 5.34254 5.49758 5.62169 5.81865 6.04511 6.21106 6.65349 6.72108 7.18065 7.37293 8.87102 Molecular weight = 272.05amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.005120 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.993390 B = 5467.436118 C = 6573.773107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.270 3.730 3 H 0.004 0.996 4 C -0.549 4.549 5 H 0.078 0.922 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.973 3.027 9 H -0.288 1.288 10 H -0.262 1.262 11 H -0.270 1.270 12 N -0.687 5.687 13 C 0.540 3.460 14 O -0.573 6.573 15 C -0.117 4.117 16 C -0.086 4.086 17 C 0.155 3.845 18 Cl 0.000 7.000 19 N -0.443 5.443 20 C 0.111 3.889 21 C 0.093 3.907 22 F -0.114 7.114 23 H 0.012 0.988 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.266 0.734 27 H 0.407 0.593 28 H 0.179 0.821 29 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.195 -9.774 -14.375 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.168 3.832 3 H 0.022 0.978 4 C -0.587 4.587 5 H 0.096 0.904 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.797 3.203 9 H -0.214 1.214 10 H -0.187 1.187 11 H -0.196 1.196 12 N -0.336 5.336 13 C 0.326 3.674 14 O -0.453 6.453 15 C -0.129 4.129 16 C -0.107 4.107 17 C -0.008 4.008 18 Cl 0.028 6.972 19 N -0.154 5.154 20 C -0.048 4.048 21 C 0.070 3.930 22 F -0.092 7.092 23 H 0.031 0.969 24 H 0.063 0.937 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.244 0.756 28 H 0.196 0.804 29 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 5.221 -9.380 -14.942 18.398 hybrid contribution -0.186 0.226 1.719 1.744 sum 5.036 -9.154 -13.222 16.852 Atomic orbital electron populations 1.21925 0.97888 0.99837 0.99829 1.18477 0.91398 0.92146 0.81227 0.97812 1.21488 1.32958 1.13835 0.90468 0.90374 1.25789 0.94767 0.95521 1.02320 1.70041 1.36786 1.23831 1.24804 0.85384 0.78656 0.78768 0.77473 1.21378 1.18677 1.19557 1.46208 1.63856 1.14345 1.09197 1.18316 0.78881 0.86440 0.83775 1.90796 1.52175 1.17008 1.85351 1.20621 1.03087 0.95219 0.93955 1.22129 0.96084 0.92086 1.00396 1.21629 0.99387 0.89718 0.90033 1.98437 1.91212 1.09278 1.98232 1.67061 1.13793 1.07991 1.26558 1.23326 0.94665 0.88373 0.98471 1.19204 0.99246 0.79814 0.94733 1.91607 1.89626 1.31583 1.96430 0.96852 0.93675 0.91166 0.92456 0.75581 0.80387 0.76140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.69 9.26 71.98 0.67 -6.03 15 2 C 0.27 13.56 2.56 44.24 0.11 13.67 15 3 H 0.00 0.24 7.58 -2.39 -0.02 0.22 15 4 C -0.55 -27.88 8.73 25.60 0.22 -27.66 15 5 H 0.08 3.62 7.74 -2.91 -0.02 3.60 15 6 C 0.02 0.86 5.30 84.66 0.45 1.31 15 7 N -0.92 -51.34 11.32 21.45 0.24 -51.10 15 8 Si 0.97 40.60 29.54 68.60 2.03 42.63 15 9 H -0.29 -12.07 7.11 99.48 0.71 -11.36 15 10 H -0.26 -10.34 7.11 99.48 0.71 -9.63 15 11 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 12 N -0.69 -27.31 5.03 -448.84 -2.26 -29.56 15 13 C 0.54 21.48 7.76 86.83 0.67 22.16 15 14 O -0.57 -28.05 15.14 -3.80 -0.06 -28.11 15 15 C -0.12 -3.45 5.91 -19.85 -0.12 -3.56 15 16 C -0.09 -1.94 9.37 22.65 0.21 -1.72 15 17 C 0.16 3.28 7.26 84.67 0.62 3.89 15 18 Cl 0.00 0.00 29.10 -2.72 -0.08 -0.08 15 19 N -0.44 -9.34 10.31 -186.68 -1.92 -11.26 15 20 C 0.11 2.15 11.17 84.76 0.95 3.09 15 21 C 0.09 2.49 7.33 22.77 0.17 2.66 15 22 F -0.11 -3.62 15.71 44.97 0.71 -2.92 15 23 H 0.01 0.61 8.14 -2.38 -0.02 0.59 15 24 H 0.04 2.01 8.14 -2.39 -0.02 1.99 15 25 H 0.07 3.79 6.07 -2.39 -0.01 3.78 15 26 H 0.27 14.17 8.31 -92.71 -0.77 13.40 15 27 H 0.41 13.01 6.68 -92.70 -0.62 12.39 15 28 H 0.18 3.26 6.53 -2.91 -0.02 3.24 15 29 H 0.22 2.44 8.06 -2.91 -0.02 2.42 15 Total: -1.00 -65.44 279.38 3.20 -62.24 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.59 Total: 10.35 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 3.95 Total: 7.82 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -3.94 Total: -91.92 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.06 Total: -28.11 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.71 Total: -2.92 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -0.08 Total: -0.08 kcal Total: -65.44 3.20 -62.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931155051.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.480 kcal (2) G-P(sol) polarization free energy of solvation -65.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds