Wall clock time and date at job start Mon Mar 30 2020 01:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46494 * 120.00265 * 2 1 4 4 C 1.50709 * 109.47166 * 269.99688 * 3 2 1 5 5 H 1.07999 * 119.99435 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99853 * 179.97438 * 4 3 2 7 7 N 1.31503 * 120.00440 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99561 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47284 * 59.99741 * 8 6 4 10 10 H 1.48494 * 109.47309 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47131 * 300.00065 * 8 6 4 12 12 C 1.34781 * 120.00012 * 179.97438 * 2 1 3 13 13 O 1.21275 * 120.00274 * 180.02562 * 12 2 1 14 14 C 1.50705 * 119.99811 * 0.02562 * 12 2 1 15 15 S 1.81398 * 109.47136 * 179.97438 * 14 12 2 16 16 C 1.76199 * 103.00071 * 179.97438 * 15 14 12 17 17 N 1.31156 * 125.55966 * 359.69433 * 16 15 14 18 18 N 1.40415 * 106.90705 * 179.85611 * 17 16 15 19 19 H 0.96997 * 126.76541 * 180.13437 * 18 17 16 20 20 C 1.34766 * 106.47665 * 0.40292 * 18 17 16 21 21 O 1.35423 * 125.97117 * 179.77813 * 20 18 17 22 22 N 1.31412 * 108.06075 * 359.75186 * 20 18 17 23 23 H 1.08997 * 109.47738 * 270.00274 * 1 2 3 24 24 H 1.09001 * 109.46767 * 30.00466 * 1 2 3 25 25 H 1.09010 * 109.47002 * 150.00019 * 1 2 3 26 26 H 1.09001 * 109.47382 * 29.99441 * 3 2 1 27 27 H 1.08998 * 109.47652 * 150.00047 * 3 2 1 28 28 H 0.96999 * 120.00258 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.46894 * 59.99918 * 14 12 2 30 30 H 1.09000 * 109.47022 * 299.99473 * 14 12 2 31 31 H 0.96709 * 113.99982 * 269.99548 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7037 -1.4209 5 1 2.0982 1.0956 -2.2417 6 6 3.1262 2.8778 -1.6728 7 7 3.5526 3.6184 -0.6733 8 14 3.4369 3.4173 -3.4340 9 1 2.1392 3.5945 -4.1338 10 1 4.1796 4.7032 -3.4341 11 1 4.2396 2.3826 -4.1343 12 6 2.1389 -1.1672 0.0005 13 8 3.3516 -1.1673 0.0010 14 6 1.3853 -2.4724 0.0005 15 16 2.5641 -3.8512 0.0005 16 6 1.5167 -5.2681 0.0013 17 7 0.2053 -5.2472 0.0074 18 7 -0.2244 -6.5839 0.0022 19 1 -1.1419 -6.8989 0.0029 20 6 0.8889 -7.3433 0.0021 21 8 0.9284 -8.6970 0.0020 22 7 1.9295 -6.5408 0.0014 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8901 -0.5139 26 1 1.6084 2.0284 0.5137 27 1 3.1499 1.1384 0.5138 28 1 4.0294 4.4443 -0.8505 29 1 0.7590 -2.5302 -0.8897 30 1 0.7584 -2.5299 0.8903 31 1 0.9401 -9.0902 0.8855 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116684319.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:13 Heat of formation + Delta-G solvation = 26.065398 kcal Electronic energy + Delta-G solvation = -17801.883553 eV Core-core repulsion = 14633.807624 eV Total energy + Delta-G solvation = -3168.075929 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.073 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.35448 -38.99605 -38.08778 -34.93706 -32.91850 -32.69467 -31.02866 -29.93767 -27.43581 -25.71819 -23.62402 -22.95843 -22.42758 -19.81362 -18.81526 -17.87883 -16.70666 -16.62219 -16.46530 -16.41753 -15.28042 -15.18048 -14.69210 -14.24667 -13.74427 -13.56583 -13.21751 -12.68493 -12.23628 -12.01062 -11.91920 -11.83307 -11.22984 -10.98807 -10.91246 -10.77465 -10.57571 -10.19637 -10.17771 -10.11111 -9.67966 -9.17022 -8.44362 -7.79358 -7.66079 -6.05676 -4.10859 0.98218 1.03384 1.73562 2.24597 2.39085 3.21082 3.32857 3.37394 3.41406 3.56938 3.85209 4.43973 4.48213 4.92434 5.11694 5.29019 5.30364 5.35819 5.62871 5.71300 5.87131 6.12678 6.16169 6.94885 6.97971 7.38064 7.44536 7.49341 7.89606 8.19538 8.25513 8.79517 8.96384 9.54305 11.02502 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.039676 B = 0.003538 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.555734 B = 7912.553723 C = 8056.287198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.593 5.593 3 C 0.246 3.754 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.524 3.476 13 O -0.524 6.524 14 C -0.155 4.155 15 S 0.114 5.886 16 C 0.210 3.790 17 N -0.304 5.304 18 N -0.482 5.482 19 H 0.441 0.559 20 C 0.461 3.539 21 O -0.441 6.441 22 N -0.508 5.508 23 H 0.048 0.952 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.036 0.964 27 H 0.047 0.953 28 H 0.265 0.735 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.116 -19.750 4.265 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.326 5.326 3 C 0.127 3.873 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.307 3.693 13 O -0.401 6.401 14 C -0.307 4.307 15 S 0.340 5.660 16 C -0.180 4.180 17 N -0.142 5.142 18 N -0.213 5.213 19 H 0.287 0.713 20 C 0.144 3.856 21 O -0.242 6.242 22 N -0.249 5.249 23 H 0.066 0.934 24 H 0.096 0.904 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -9.238 -19.064 3.722 21.509 hybrid contribution -2.161 -0.455 -0.523 2.270 sum -11.400 -19.519 3.198 22.829 Atomic orbital electron populations 1.21718 0.81087 1.02886 1.00740 1.48076 1.06391 1.07302 1.70790 1.19370 0.92651 0.77536 0.97736 1.21386 1.36915 1.06413 0.92180 0.92388 1.24925 0.95232 0.96319 0.97520 1.69912 1.38193 1.14352 1.30856 0.86542 0.78383 0.77867 0.84558 1.20255 1.21159 1.20049 1.19245 0.87682 0.83853 0.78506 1.90732 1.13136 1.86402 1.49869 1.23956 1.02778 0.95929 1.08053 1.86714 1.01510 0.86656 1.91137 1.26594 0.93062 0.98212 1.00092 1.78537 1.11404 0.94143 1.30159 1.48256 1.09897 1.04769 1.58390 0.71321 1.21288 0.83097 0.84933 0.96312 1.84866 1.94640 1.09776 1.34900 1.70852 1.27711 0.99505 1.26823 0.93382 0.90375 0.92337 0.94648 0.93532 0.92581 0.86536 0.86681 0.72546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.24 59.85 0.61 1.82 16 2 N -0.59 -12.27 2.86 -182.95 -0.52 -12.79 16 3 C 0.25 6.32 5.16 -5.19 -0.03 6.30 16 4 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 8 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.52 10.67 7.69 -10.98 -0.08 10.59 16 13 O -0.52 -12.93 15.44 5.56 0.09 -12.85 16 14 C -0.15 -2.34 4.59 36.01 0.17 -2.18 16 15 S 0.11 1.81 21.30 -107.50 -2.29 -0.48 16 16 C 0.21 3.04 8.28 -90.95 -0.75 2.29 16 17 N -0.30 -3.90 12.34 30.14 0.37 -3.52 16 18 N -0.48 -4.42 7.45 29.39 0.22 -4.21 16 19 H 0.44 2.26 8.96 -182.36 -1.63 0.63 16 20 C 0.46 4.71 9.54 -89.86 -0.86 3.85 16 21 O -0.44 -2.87 13.63 -17.96 -0.24 -3.12 16 22 N -0.51 -7.14 11.25 -14.97 -0.17 -7.31 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 25 H 0.06 0.72 6.44 -51.92 -0.33 0.39 16 26 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 27 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.12 1.59 7.40 -51.92 -0.38 1.21 16 30 H 0.11 1.47 8.11 -51.92 -0.42 1.05 16 31 H 0.42 0.29 9.06 45.56 0.41 0.70 16 LS Contribution 296.57 15.07 4.47 4.47 Total: -1.00 -36.45 296.57 -7.28 -43.73 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: -3.55 Total: -4.16 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -1.36 Total: 9.12 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.64 Total: -53.49 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.16 Total: -15.96 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.29 Total: -0.48 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -36.45 -7.28 -43.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116684319.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.793 kcal (2) G-P(sol) polarization free energy of solvation -36.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds