Wall clock time and date at job start Mon Mar 30 2020 01:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46494 * 120.00265 * 2 1 4 4 C 1.50709 * 109.47166 * 269.99688 * 3 2 1 5 5 H 1.07999 * 119.99435 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99853 * 179.97438 * 4 3 2 7 7 N 1.31503 * 120.00440 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99561 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47284 * 59.99741 * 8 6 4 10 10 H 1.48494 * 109.47309 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47131 * 300.00065 * 8 6 4 12 12 C 1.34781 * 120.00012 * 179.97438 * 2 1 3 13 13 O 1.21275 * 120.00274 * 180.02562 * 12 2 1 14 14 C 1.50705 * 119.99811 * 0.02562 * 12 2 1 15 15 S 1.81398 * 109.47136 * 179.97438 * 14 12 2 16 16 C 1.76199 * 103.00071 * 179.97438 * 15 14 12 17 17 N 1.31156 * 125.55966 * 359.69433 * 16 15 14 18 18 N 1.40415 * 106.90705 * 179.85611 * 17 16 15 19 19 H 0.96997 * 126.76541 * 180.13437 * 18 17 16 20 20 C 1.34766 * 106.47665 * 0.40292 * 18 17 16 21 21 O 1.35423 * 125.97117 * 179.77813 * 20 18 17 22 22 N 1.31412 * 108.06075 * 359.75186 * 20 18 17 23 23 H 1.08997 * 109.47738 * 270.00274 * 1 2 3 24 24 H 1.09001 * 109.46767 * 30.00466 * 1 2 3 25 25 H 1.09010 * 109.47002 * 150.00019 * 1 2 3 26 26 H 1.09001 * 109.47382 * 29.99441 * 3 2 1 27 27 H 1.08998 * 109.47652 * 150.00047 * 3 2 1 28 28 H 0.96999 * 120.00258 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.46894 * 59.99918 * 14 12 2 30 30 H 1.09000 * 109.47022 * 299.99473 * 14 12 2 31 31 H 0.96709 * 113.99982 * 269.99548 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7037 -1.4209 5 1 2.0982 1.0956 -2.2417 6 6 3.1262 2.8778 -1.6728 7 7 3.5526 3.6184 -0.6733 8 14 3.4369 3.4173 -3.4340 9 1 2.1392 3.5945 -4.1338 10 1 4.1796 4.7032 -3.4341 11 1 4.2396 2.3826 -4.1343 12 6 2.1389 -1.1672 0.0005 13 8 3.3516 -1.1673 0.0010 14 6 1.3853 -2.4724 0.0005 15 16 2.5641 -3.8512 0.0005 16 6 1.5167 -5.2681 0.0013 17 7 0.2053 -5.2472 0.0074 18 7 -0.2244 -6.5839 0.0022 19 1 -1.1419 -6.8989 0.0029 20 6 0.8889 -7.3433 0.0021 21 8 0.9284 -8.6970 0.0020 22 7 1.9295 -6.5408 0.0014 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8901 -0.5139 26 1 1.6084 2.0284 0.5137 27 1 3.1499 1.1384 0.5138 28 1 4.0294 4.4443 -0.8505 29 1 0.7590 -2.5302 -0.8897 30 1 0.7584 -2.5299 0.8903 31 1 0.9401 -9.0902 0.8855 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116684319.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:13 Heat of formation + Delta-G solvation = -5.516916 kcal Electronic energy + Delta-G solvation = -17803.253065 eV Core-core repulsion = 14633.807624 eV Total energy + Delta-G solvation = -3169.445441 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.073 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.23088 -40.64113 -38.68337 -36.66839 -34.76162 -33.79596 -32.09295 -31.32284 -29.16944 -27.27526 -24.83868 -24.50004 -23.41150 -20.59253 -20.28570 -18.76879 -18.69367 -17.98755 -17.80249 -17.30760 -16.93224 -16.68879 -16.08293 -15.49224 -14.89800 -14.67588 -14.46169 -14.31076 -13.86589 -13.56898 -13.44444 -13.12567 -12.79430 -12.58369 -12.51818 -12.18168 -11.86719 -11.81078 -11.71242 -11.24049 -11.01262 -10.84780 -10.62229 -9.48840 -8.84920 -8.21131 -6.35624 -0.13314 0.19072 0.84375 1.27995 1.38987 1.43538 1.46429 1.50259 1.66132 2.27300 2.43902 2.94241 3.09172 3.48285 3.64907 3.97015 4.19417 4.45394 4.51199 4.73037 4.79760 4.96505 5.00889 5.23963 5.54347 5.70319 5.80448 6.06124 6.45713 6.60893 6.64680 6.73877 7.22111 7.38223 8.85982 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.039676 B = 0.003538 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.555734 B = 7912.553723 C = 8056.287198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.600 5.600 3 C 0.259 3.741 4 C -0.546 4.546 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.966 3.034 9 H -0.260 1.260 10 H -0.279 1.279 11 H -0.278 1.278 12 C 0.516 3.484 13 O -0.578 6.578 14 C -0.130 4.130 15 S 0.068 5.932 16 C 0.204 3.796 17 N -0.309 5.309 18 N -0.462 5.462 19 H 0.460 0.540 20 C 0.477 3.523 21 O -0.435 6.435 22 N -0.549 5.549 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.030 0.970 27 H 0.002 0.998 28 H 0.268 0.732 29 H 0.138 0.862 30 H 0.145 0.855 31 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.486 -21.460 3.521 25.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.331 5.331 3 C 0.138 3.862 4 C -0.584 4.584 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.790 3.210 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.204 1.204 12 C 0.302 3.698 13 O -0.459 6.459 14 C -0.281 4.281 15 S 0.294 5.706 16 C -0.186 4.186 17 N -0.148 5.148 18 N -0.196 5.196 19 H 0.310 0.690 20 C 0.160 3.840 21 O -0.240 6.240 22 N -0.290 5.290 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.112 0.888 26 H 0.048 0.952 27 H 0.020 0.980 28 H 0.076 0.924 29 H 0.156 0.844 30 H 0.163 0.837 31 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges -11.700 -20.828 3.004 24.077 hybrid contribution -1.500 -0.094 -0.231 1.520 sum -13.199 -20.922 2.773 24.893 Atomic orbital electron populations 1.22038 0.77414 1.04320 1.03073 1.48057 1.08639 1.05841 1.70576 1.18836 0.91327 0.79844 0.96174 1.21693 1.37059 1.06605 0.93083 0.92658 1.25828 0.94872 0.96424 1.01876 1.70030 1.38833 1.14806 1.33065 0.85492 0.78853 0.77335 0.79297 1.18428 1.20417 1.20367 1.20038 0.87377 0.85333 0.77057 1.90703 1.15765 1.87426 1.52019 1.23704 1.01784 0.92227 1.10423 1.86887 1.03274 0.88359 1.92070 1.26099 0.93254 0.97731 1.01511 1.78420 1.10521 0.96085 1.29740 1.48111 1.10823 1.03513 1.57153 0.68973 1.21171 0.82494 0.85921 0.94430 1.84864 1.94366 1.07523 1.37271 1.70746 1.29864 0.99806 1.28620 0.90546 0.91031 0.88832 0.95197 0.97953 0.92358 0.84384 0.83691 0.69388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.05 10.24 127.77 1.31 3.36 16 2 N -0.60 -24.73 2.86 -851.12 -2.43 -27.16 16 3 C 0.26 13.78 5.16 85.64 0.44 14.22 16 4 C -0.55 -31.21 9.39 25.60 0.24 -30.97 16 5 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.53 5.46 84.66 0.46 0.99 16 7 N -0.93 -55.93 13.29 21.44 0.28 -55.64 16 8 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 9 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 C 0.52 21.10 7.69 87.66 0.67 21.77 16 13 O -0.58 -29.69 15.44 -3.01 -0.05 -29.74 16 14 C -0.13 -3.72 4.59 71.24 0.33 -3.39 16 15 S 0.07 2.16 21.30 -56.49 -1.20 0.96 16 16 C 0.20 5.64 8.28 180.46 1.49 7.13 16 17 N -0.31 -7.10 12.34 -58.57 -0.72 -7.82 16 18 N -0.46 -7.03 7.45 -172.64 -1.29 -8.32 16 19 H 0.46 3.03 8.96 -213.12 -1.91 1.12 16 20 C 0.48 8.46 9.54 180.08 1.72 10.18 16 21 O -0.44 -4.26 13.63 -87.18 -1.19 -5.45 16 22 N -0.55 -14.60 11.25 -314.72 -3.54 -18.14 16 23 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 25 H 0.09 1.96 6.44 -2.38 -0.02 1.95 16 26 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 27 H 0.00 0.14 7.42 -2.39 -0.02 0.13 16 28 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.14 3.37 7.40 -2.39 -0.02 3.35 16 30 H 0.15 3.28 8.11 -2.39 -0.02 3.26 16 31 H 0.44 -0.97 9.06 -74.05 -0.67 -1.64 16 Total: -1.00 -81.97 296.57 -2.82 -84.79 By element: Atomic # 1 Polarization: -2.26 SS G_CDS: -1.38 Total: -3.64 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 6.67 Total: 23.30 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -7.69 Total: -117.09 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -1.24 Total: -35.18 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.20 Total: 0.96 kcal Total: -81.97 -2.82 -84.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116684319.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.275 kcal (2) G-P(sol) polarization free energy of solvation -81.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds