Wall clock time and date at job start Mon Mar 30 2020 01:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47281 * 270.00022 * 3 2 1 5 5 H 1.48503 * 109.47219 * 30.00472 * 3 2 1 6 6 H 1.48506 * 109.47052 * 150.00201 * 3 2 1 7 7 C 1.37876 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99596 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00326 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.46934 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00447 * 0.02562 * 10 9 7 12 12 N 1.34785 * 119.99653 * 180.02562 * 10 9 7 13 13 C 1.40157 * 119.99717 * 175.92937 * 12 10 9 14 14 C 1.38579 * 120.51549 * 34.41703 * 13 12 10 15 15 N 1.31945 * 120.72207 * 179.97438 * 14 13 12 16 16 C 1.31933 * 121.91368 * 0.02562 * 15 14 13 17 17 C 1.38066 * 120.96332 * 0.02562 * 16 15 14 18 18 C 1.39093 * 119.16178 * 359.74381 * 17 16 15 19 19 O 1.35814 * 120.86389 * 180.27470 * 18 17 16 20 20 C 1.42898 * 117.00310 * 0.22244 * 19 18 17 21 21 F 1.39893 * 109.47194 * 300.00381 * 20 19 18 22 22 F 1.39907 * 109.46912 * 60.00595 * 20 19 18 23 23 H 0.97007 * 120.00017 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46925 * 60.00482 * 9 7 2 25 25 H 1.08995 * 109.47426 * 300.00201 * 9 7 2 26 26 H 0.96995 * 119.99738 * 355.64770 * 12 10 9 27 27 H 1.07995 * 119.63927 * 0.02562 * 14 13 12 28 28 H 1.08004 * 119.51712 * 179.97438 * 16 15 14 29 29 H 1.07997 * 120.42157 * 180.02562 * 17 16 15 30 30 H 1.09004 * 109.47114 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 8 3.4227 -3.4230 -0.0001 12 7 1.7809 -4.9153 -0.0011 13 6 2.6889 -5.9796 -0.0872 14 6 3.9370 -5.8896 0.5081 15 7 4.7947 -6.8892 0.4299 16 6 4.5076 -8.0061 -0.2108 17 6 3.2860 -8.1749 -0.8318 18 6 2.3479 -7.1497 -0.7718 19 8 1.1334 -7.2810 -1.3656 20 6 0.8715 -8.5124 -2.0416 21 9 1.8106 -8.6928 -3.0627 22 9 0.9618 -9.5719 -1.1324 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 0.8296 -5.0933 0.0623 27 1 4.2104 -4.9919 1.0425 28 1 5.2390 -8.7998 -0.2509 29 1 3.0600 -9.0930 -1.3536 30 1 -0.1307 -8.4859 -2.4696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143194428.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:58 Heat of formation + Delta-G solvation = -145.167015 kcal Electronic energy + Delta-G solvation = -20426.451814 eV Core-core repulsion = 16664.817553 eV Total energy + Delta-G solvation = -3761.634261 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.65613 -47.65505 -40.87458 -38.89305 -38.13139 -34.55584 -33.04675 -31.43733 -30.35127 -28.53590 -26.63669 -24.35936 -23.27983 -22.69370 -20.01367 -19.44006 -18.80883 -18.23723 -17.11731 -16.89971 -16.24718 -16.02471 -15.53831 -14.93585 -14.73801 -14.52640 -14.30437 -14.15785 -14.05079 -13.96351 -13.42810 -13.06100 -12.99063 -12.66400 -12.20685 -11.90828 -11.45472 -10.85121 -10.76996 -10.41377 -10.04478 -9.55147 -9.38000 -9.30257 -8.90143 -8.50894 -8.01773 -6.13442 -4.13994 1.09852 1.16392 2.18412 3.12166 3.31669 3.33920 3.37266 3.41090 3.49591 3.85560 3.96502 4.31222 4.42611 4.61275 4.63130 4.71180 5.09266 5.25358 5.51797 5.55986 5.83458 6.07037 6.41539 6.42262 6.96542 7.06410 7.17747 7.74048 7.89506 8.03585 8.20945 8.87141 8.96865 9.51597 10.98723 Molecular weight = 272.08amu Principal moments of inertia in cm(-1) A = 0.028844 B = 0.004374 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.496613 B = 6400.334958 C = 7063.319915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.903 3.097 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.512 4.512 8 H 0.077 0.923 9 C 0.009 3.991 10 C 0.516 3.484 11 O -0.522 6.522 12 N -0.679 5.679 13 C 0.104 3.896 14 C 0.124 3.876 15 N -0.479 5.479 16 C 0.103 3.897 17 C -0.226 4.226 18 C 0.107 3.893 19 O -0.313 6.313 20 C 0.413 3.587 21 F -0.197 7.197 22 F -0.199 7.199 23 H 0.263 0.737 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.412 0.588 27 H 0.183 0.817 28 H 0.159 0.841 29 H 0.142 0.858 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.921 -19.157 -3.061 19.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.731 3.269 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.095 0.905 9 C -0.030 4.030 10 C 0.308 3.692 11 O -0.396 6.396 12 N -0.326 5.326 13 C 0.006 3.994 14 C -0.035 4.035 15 N -0.190 5.190 16 C -0.055 4.055 17 C -0.247 4.247 18 C 0.053 3.947 19 O -0.229 6.229 20 C 0.323 3.677 21 F -0.179 7.179 22 F -0.181 7.181 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.248 0.752 27 H 0.200 0.800 28 H 0.176 0.824 29 H 0.160 0.840 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 0.417 -18.575 -2.692 18.774 hybrid contribution -0.934 0.261 -0.623 1.153 sum -0.518 -18.314 -3.316 18.619 Atomic orbital electron populations 1.69954 1.06074 1.27117 1.50727 1.24999 0.94927 0.99571 0.94962 0.86395 0.79860 0.82427 0.78234 1.20565 1.21215 1.19558 1.21130 0.94306 0.88863 1.50790 0.90493 1.19278 0.93924 0.89826 0.99983 1.22455 0.91601 0.82682 0.72483 1.90543 1.17835 1.83925 1.47269 1.44047 1.09620 1.04588 1.74315 1.18478 0.94390 0.87519 0.99052 1.23208 0.87739 0.97580 0.94998 1.67807 1.33601 1.00426 1.17150 1.22513 0.94333 0.95284 0.93371 1.22293 0.96134 0.99734 1.06556 1.19007 0.85075 0.95723 0.94902 1.86605 1.32880 1.36681 1.66771 1.23423 0.93386 0.74409 0.76515 1.93106 1.69705 1.94787 1.60289 1.93103 1.97153 1.58883 1.68924 0.92770 0.92900 0.92853 0.75195 0.80001 0.82350 0.83994 0.79905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.62 13.29 55.43 0.74 -24.89 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -14.33 8.92 -34.44 -0.31 -14.64 16 8 H 0.08 2.24 6.75 -52.48 -0.35 1.88 16 9 C 0.01 0.22 5.46 -29.04 -0.16 0.06 16 10 C 0.52 11.18 7.67 -10.98 -0.08 11.10 16 11 O -0.52 -12.75 12.91 5.55 0.07 -12.67 16 12 N -0.68 -11.73 5.23 -9.65 -0.05 -11.78 16 13 C 0.10 1.75 6.35 -83.34 -0.53 1.23 16 14 C 0.12 2.18 9.88 -17.38 -0.17 2.01 16 15 N -0.48 -7.78 10.35 -13.16 -0.14 -7.92 16 16 C 0.10 1.36 11.17 -17.57 -0.20 1.16 16 17 C -0.23 -2.90 8.34 -39.33 -0.33 -3.23 16 18 C 0.11 1.53 6.54 -38.68 -0.25 1.28 16 19 O -0.31 -3.76 10.10 -19.16 -0.19 -3.96 16 20 C 0.41 3.40 5.98 101.05 0.60 4.01 16 21 F -0.20 -1.96 15.62 2.25 0.04 -1.92 16 22 F -0.20 -1.82 15.65 2.25 0.04 -1.79 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.41 5.99 8.64 -40.82 -0.35 5.64 16 27 H 0.18 3.48 6.20 -52.49 -0.33 3.15 16 28 H 0.16 1.53 8.06 -52.48 -0.42 1.11 16 29 H 0.14 1.54 5.28 -52.49 -0.28 1.27 16 30 H 0.18 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 277.44 15.07 4.18 4.18 Total: -1.00 -32.59 277.44 -4.00 -36.59 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -2.14 Total: 3.07 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -1.52 Total: 4.45 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.55 Total: -44.59 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.12 Total: -16.63 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.07 Total: -3.71 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.59 -4.00 -36.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194428.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.575 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds