Wall clock time and date at job start Mon Mar 30 2020 01:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47281 * 270.00022 * 3 2 1 5 5 H 1.48503 * 109.47219 * 30.00472 * 3 2 1 6 6 H 1.48506 * 109.47052 * 150.00201 * 3 2 1 7 7 C 1.37876 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99596 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00326 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.46934 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00447 * 0.02562 * 10 9 7 12 12 N 1.34785 * 119.99653 * 180.02562 * 10 9 7 13 13 C 1.40157 * 119.99717 * 175.92937 * 12 10 9 14 14 C 1.38579 * 120.51549 * 34.41703 * 13 12 10 15 15 N 1.31945 * 120.72207 * 179.97438 * 14 13 12 16 16 C 1.31933 * 121.91368 * 0.02562 * 15 14 13 17 17 C 1.38066 * 120.96332 * 0.02562 * 16 15 14 18 18 C 1.39093 * 119.16178 * 359.74381 * 17 16 15 19 19 O 1.35814 * 120.86389 * 180.27470 * 18 17 16 20 20 C 1.42898 * 117.00310 * 0.22244 * 19 18 17 21 21 F 1.39893 * 109.47194 * 300.00381 * 20 19 18 22 22 F 1.39907 * 109.46912 * 60.00595 * 20 19 18 23 23 H 0.97007 * 120.00017 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46925 * 60.00482 * 9 7 2 25 25 H 1.08995 * 109.47426 * 300.00201 * 9 7 2 26 26 H 0.96995 * 119.99738 * 355.64770 * 12 10 9 27 27 H 1.07995 * 119.63927 * 0.02562 * 14 13 12 28 28 H 1.08004 * 119.51712 * 179.97438 * 16 15 14 29 29 H 1.07997 * 120.42157 * 180.02562 * 17 16 15 30 30 H 1.09004 * 109.47114 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 8 3.4227 -3.4230 -0.0001 12 7 1.7809 -4.9153 -0.0011 13 6 2.6889 -5.9796 -0.0872 14 6 3.9370 -5.8896 0.5081 15 7 4.7947 -6.8892 0.4299 16 6 4.5076 -8.0061 -0.2108 17 6 3.2860 -8.1749 -0.8318 18 6 2.3479 -7.1497 -0.7718 19 8 1.1334 -7.2810 -1.3656 20 6 0.8715 -8.5124 -2.0416 21 9 1.8106 -8.6928 -3.0627 22 9 0.9618 -9.5719 -1.1324 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 0.8296 -5.0933 0.0623 27 1 4.2104 -4.9919 1.0425 28 1 5.2390 -8.7998 -0.2509 29 1 3.0600 -9.0930 -1.3536 30 1 -0.1307 -8.4859 -2.4696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143194428.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:57 Heat of formation + Delta-G solvation = -168.911227 kcal Electronic energy + Delta-G solvation = -20427.481441 eV Core-core repulsion = 16664.817553 eV Total energy + Delta-G solvation = -3762.663887 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.35544 -48.35630 -42.10740 -40.37279 -39.22303 -36.05840 -35.13496 -32.55271 -31.93125 -30.23696 -27.43829 -26.13255 -24.51688 -24.00424 -21.61232 -20.38470 -19.74234 -18.96253 -18.71200 -18.17359 -17.92587 -17.29476 -16.81684 -16.52220 -15.95379 -15.79487 -15.71795 -15.22450 -15.07251 -14.74276 -14.70389 -14.40614 -14.20874 -14.17422 -13.42721 -13.34819 -12.93711 -12.80228 -12.62601 -12.05985 -11.89953 -11.47444 -10.76585 -10.68120 -10.62779 -10.33925 -9.35665 -8.26231 -6.33402 -0.09858 0.00428 1.34725 1.42098 1.42220 1.54715 1.68653 2.02223 2.44002 2.45308 2.64823 3.10012 3.36342 3.50002 3.59157 3.63788 3.73735 3.83788 4.25667 4.42416 4.53951 4.74738 5.03029 5.17020 5.21605 5.29891 5.69793 5.77629 5.98255 6.45827 6.79099 6.85374 7.21469 7.37211 8.85725 Molecular weight = 272.08amu Principal moments of inertia in cm(-1) A = 0.028844 B = 0.004374 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.496613 B = 6400.334958 C = 7063.319915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.058 0.942 9 C 0.013 3.987 10 C 0.523 3.477 11 O -0.556 6.556 12 N -0.660 5.660 13 C 0.074 3.926 14 C 0.108 3.892 15 N -0.500 5.500 16 C 0.112 3.888 17 C -0.221 4.221 18 C 0.118 3.882 19 O -0.322 6.322 20 C 0.408 3.592 21 F -0.206 7.206 22 F -0.203 7.203 23 H 0.268 0.732 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.425 0.575 27 H 0.157 0.843 28 H 0.199 0.801 29 H 0.168 0.832 30 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.345 -20.843 -3.949 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.076 0.924 9 C -0.026 4.026 10 C 0.314 3.686 11 O -0.433 6.433 12 N -0.307 5.307 13 C -0.023 4.023 14 C -0.050 4.050 15 N -0.212 5.212 16 C -0.046 4.046 17 C -0.242 4.242 18 C 0.064 3.936 19 O -0.238 6.238 20 C 0.319 3.681 21 F -0.188 7.188 22 F -0.184 7.184 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.263 0.737 27 H 0.174 0.826 28 H 0.216 0.784 29 H 0.185 0.815 30 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -0.044 -20.307 -3.583 20.621 hybrid contribution -0.822 0.580 -0.395 1.080 sum -0.866 -19.728 -3.978 20.143 Atomic orbital electron populations 1.70019 1.07062 1.28165 1.50964 1.25734 0.95813 1.02607 0.94407 0.85474 0.78524 0.78713 0.78506 1.19822 1.19928 1.19886 1.21347 0.93789 0.90997 1.51497 0.92411 1.19088 0.93996 0.89913 0.99602 1.21843 0.90453 0.83708 0.72611 1.90531 1.18829 1.84747 1.49179 1.43525 1.10453 1.03489 1.73264 1.18468 0.94274 0.88306 1.01294 1.22873 0.88681 0.97578 0.95831 1.67810 1.33687 1.01198 1.18495 1.23217 0.95227 0.94867 0.91256 1.22599 0.95507 1.00047 1.06006 1.19035 0.86196 0.94724 0.93605 1.86626 1.31481 1.39090 1.66597 1.24371 0.95108 0.72830 0.75761 1.93091 1.70418 1.94706 1.60551 1.93096 1.97207 1.58936 1.69201 0.92327 0.93278 0.93027 0.73669 0.82585 0.78394 0.81484 0.74494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.69 13.29 21.45 0.28 -52.41 16 2 C 0.01 0.75 5.46 84.65 0.46 1.22 16 3 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.54 -30.87 8.92 25.60 0.23 -30.64 16 8 H 0.06 3.48 6.75 -2.91 -0.02 3.46 16 9 C 0.01 0.66 5.46 29.10 0.16 0.82 16 10 C 0.52 23.40 7.67 87.66 0.67 24.07 16 11 O -0.56 -28.38 12.91 -3.05 -0.04 -28.42 16 12 N -0.66 -23.07 5.23 -302.83 -1.58 -24.66 16 13 C 0.07 2.50 6.35 38.27 0.24 2.74 16 14 C 0.11 3.91 9.88 84.76 0.84 4.74 16 15 N -0.50 -16.01 10.35 -195.56 -2.02 -18.03 16 16 C 0.11 2.69 11.17 84.64 0.95 3.63 16 17 C -0.22 -5.06 8.34 22.43 0.19 -4.88 16 18 C 0.12 3.20 6.54 22.85 0.15 3.35 16 19 O -0.32 -6.91 10.10 -91.47 -0.92 -7.83 16 20 C 0.41 5.24 5.98 113.37 0.68 5.92 16 21 F -0.21 -3.40 15.62 44.97 0.70 -2.70 16 22 F -0.20 -3.01 15.65 44.97 0.70 -2.31 16 23 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 24 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.42 12.26 8.64 -92.71 -0.80 11.46 16 27 H 0.16 6.38 6.20 -2.91 -0.02 6.36 16 28 H 0.20 3.05 8.06 -2.91 -0.02 3.02 16 29 H 0.17 2.99 5.28 -2.91 -0.02 2.97 16 30 H 0.24 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -71.59 277.44 4.12 -67.47 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.41 Total: 11.27 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 4.56 Total: 10.97 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -3.32 Total: -95.10 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.96 Total: -36.25 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 1.41 Total: -5.01 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -71.59 4.12 -67.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194428.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.445 kcal (2) G-P(sol) polarization free energy of solvation -71.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds